REAPR: a universal tool for genome assembly evaluation
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January 2013 |
The genome of the ammonia-oxidizing Candidatus Nitrososphaera gargensis: insights into metabolic versatility and environmental adaptations : The genome of
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October 2012 |
An acid-tolerant ammonia-oxidizing γ-proteobacterium from soil
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January 2017 |
Versatile and open software for comparing large genomes
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January 2004 |
Modified Pathway To Synthesize Ribulose 1,5-Bisphosphate in Methanogenic Archaea
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September 2004 |
Global extent, development and economic impact of acid soils
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April 1995 |
Shifting the genomic gold standard for the prokaryotic species definition
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October 2009 |
Archaea produce lower yields of N 2 O than bacteria during aerobic ammonia oxidation in soil : N
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April 2016 |
A Monocarboxylate Permease of Rhizobium leguminosarum Is the First Member of a New Subfamily of Transporters
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October 2002 |
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating
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June 2009 |
Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota
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July 2015 |
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
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June 2004 |
ATP synthases from archaea: The beauty of a molecular motor
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June 2014 |
Archaeal Type III RuBisCOs Function in a Pathway for AMP Metabolism
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February 2007 |
GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
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October 2013 |
Controls on Nitrogen Cycling in Terrestrial Ecosystems: a Synthetic Analysis of Literature data
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May 2005 |
MicroScope: a platform for microbial genome annotation and comparative genomics
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January 2009 |
A Mesophilic, Autotrophic, Ammonia-Oxidizing Archaeon of Thaumarchaeal Group I.1a Cultivated from a Deep Oligotrophic Soil Horizon
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April 2014 |
Natural products containing a diazo group
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January 2011 |
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
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August 2014 |
Cultivation of an obligate acidophilic ammonia oxidizer from a nitrifying acid soil
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September 2011 |
Reaction mechanism of azoreductases suggests convergent evolution with quinone oxidoreductases
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August 2010 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
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March 2010 |
Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: Implications for the microbial "pan-genome"
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September 2005 |
MyTaxa: an advanced taxonomic classifier for genomic and metagenomic sequences
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March 2014 |
Nitrogen in Agriculture: Balancing the Cost of an Essential Resource
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November 2009 |
Microbial species delineation using whole genome sequences
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July 2015 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
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May 2015 |
Alkaline pH homeostasis in bacteria: New insights
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November 2005 |
Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park
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November 2013 |
The Divergent AmoC3 Subunit of Ammonia Monooxygenase Functions as Part of a Stress Response System in Nitrosomonas europaea
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April 2012 |
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
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September 2003 |
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
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January 2013 |
Search and clustering orders of magnitude faster than BLAST
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August 2010 |
Phylogenetic congruence and ecological coherence in terrestrial Thaumarchaeota
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July 2015 |
Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers
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November 2016 |
Conserved active site cysteine residue of archaeal THI4 homolog is essential for thiamine biosynthesis in Haloferax volcanii
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October 2014 |
Characterization of probiotic Escherichia coli isolates with a novel pan-genome microarray
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January 2007 |
Variability of the transporter gene complement in ammonia-oxidizing archaea
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December 2014 |
Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage
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November 2015 |
Characterisation of terrestrial acidophilic archaeal ammonia oxidisers and their inhibition and stimulation by organic compounds
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July 2014 |
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
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May 2012 |
Emergent Macrophytes Act Selectively on Ammonia-Oxidizing Bacteria and Archaea
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June 2012 |
Towards a Genome-Based Taxonomy for Prokaryotes
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September 2005 |
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
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May 2013 |
Mobility and Bioavailability of Heavy Metals and Metalloids in soil Environments
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January 2010 |
Keeping It Simple, Transport Mechanism and pH Regulation in Na + /H + Exchangers
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March 2014 |
Molecular adaptation of ammonia monooxygenase during independent pH specialization in Thaumarchaeota
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March 2016 |
Consortia of low-abundance bacteria drive sulfate reduction-dependent degradation of fermentation products in peat soil microcosms
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March 2016 |
Biochemical Characterization of the C4-Dicarboxylate Transporter DctA from Bacillus subtilis
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April 2010 |
Contributions of ammonia-oxidizing archaea and bacteria to nitrification in Oregon forest soils
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June 2015 |
Life in acid: pH homeostasis in acidophiles
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April 2007 |
The sodium/substrate symporter family: structural and functional features
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August 2002 |
SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
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December 2012 |
Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen: Ammonia oxidizers in an acidic fen
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September 2012 |
Identifying Potential Mechanisms Enabling Acidophily in the Ammonia-Oxidizing Archaeon “Candidatus Nitrosotalea devanaterra”
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February 2016 |
Thermoplasmatales
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book
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January 2006 |
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
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April 2009 |
Insights into the phylogeny and coding potential of microbial dark matter
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July 2013 |
Putative ACP Phosphodiesterase Gene ( acpD ) Encodes an Azoreductase
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October 2001 |
Using RAxML to Infer Phylogenies
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September 2015 |
NhaA Na+/H+ Antiporter Mutants That Hardly React to the Membrane Potential
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April 2014 |
Niche specialization of terrestrial archaeal ammonia oxidizers
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December 2011 |
Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation
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November 2015 |
DNA–DNA hybridization values and their relationship to whole-genome sequence similarities
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January 2007 |
amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions: Archaeal amoA phylogeny and diversity in soils
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December 2011 |