A Tale of Two Spills: Novel Science and Policy Implications of an Emerging New Oil Spill Model
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May 2012 |
Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill
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June 2012 |
Sustained deposition of contaminants from the Deepwater Horizon spill
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May 2016 |
The soluble methane mono-oxygenase of Methylococcus capsulatus (Bath). Its ability to oxygenate n-alkanes, n-alkenes, ethers, and alicyclic, aromatic and heterocyclic compounds
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August 1977 |
Mats of psychrophilic thiotrophic bacteria associated with cold seeps of the Barents Sea
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January 2012 |
Cutadapt removes adapter sequences from high-throughput sequencing reads
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May 2011 |
Phylogenomic analysis of bacterial and archaeal sequences with AMPHORA2
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February 2012 |
Oil Biodegradation and Bioremediation: A Tale of the Two Worst Spills in U.S. History
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August 2011 |
Oil spill bioremediation: experiences, lessons and results from the Exxon Valdez oil spill in Alaska
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January 1992 |
IMG/M: the integrated metagenome data management and comparative analysis system
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November 2011 |
Natural and unnatural oil slicks in the G ulf of M exico
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December 2015 |
Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
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August 2012 |
Substrate specificity of the alkane hydroxylase system of Pseudomonas oleovorans GPo1
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October 1994 |
Tracking Hydrocarbon Plume Transport and Biodegradation at Deepwater Horizon
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August 2010 |
Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill
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January 2014 |
Metatranscriptomic Analysis of Diminutive Thiomargarita-Like Bacteria (“Candidatus Thiopilula” spp.) from Abyssal Cold Seeps of the Barbados Accretionary Prism
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February 2015 |
Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses
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July 2013 |
Trimmomatic: a flexible trimmer for Illumina sequence data
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April 2014 |
Community-wide analysis of microbial genome sequence signatures
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January 2009 |
Mapping and quantifying mammalian transcriptomes by RNA-Seq
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May 2008 |
Characterization of a Naphthalene Dioxygenase Endowed with an Exceptionally Broad Substrate Specificity toward Polycyclic Aromatic Hydrocarbons †
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October 2006 |
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
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June 2007 |
EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
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May 2011 |
Hydrocarbon-degrading bacteria: the oil-spill clean-up crew
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November 2009 |
Phylogenetic Clustering and Overdispersion in Bacterial Communities
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July 2006 |
Oxidation of Ammonia by Methane-oxidizing Bacteria and the Effects of Ammonia on Methane Oxidation
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June 1977 |
Microbial community successional patterns in beach sands impacted by the Deepwater Horizon oil spill
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February 2015 |
Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill
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October 2011 |
Aquifer environment selects for microbial species cohorts in sediment and groundwater
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February 2015 |
Single-cell Sequencing of Thiomargarita Reveals Genomic Flexibility for Adaptation to Dynamic Redox Conditions
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June 2016 |
Complete Genome Sequence of the Pyrene-Degrading Bacterium Cycloclasticus sp. Strain P1
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November 2012 |
Microbial communities acclimate to recurring changes in soil redox potential status: Fluctuating redox microbial communities
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December 2010 |
Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill
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May 2016 |
Search and clustering orders of magnitude faster than BLAST
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August 2010 |
The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments
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March 2014 |
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
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February 2008 |
Ecological Impacts of the Deepwater Horizon Oil Spill: Implications for Immunotoxicity
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November 2011 |
The RAST Server: Rapid Annotations using Subsystems Technology
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January 2008 |
Porticoccus hydrocarbonoclasticus sp. nov., an Aromatic Hydrocarbon-Degrading Bacterium Identified in Laboratory Cultures of Marine Phytoplankton
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December 2011 |
CDD: NCBI's conserved domain database
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November 2014 |
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth
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April 2012 |
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
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November 2012 |
Copper-dependent reciprocal transcriptional regulation of methane monooxygenase genes in Methylococcus capsulatus and Methylosinus trichosporium
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July 1997 |
Microbial Dynamics Following the Macondo Oil Well Blowout across Gulf of Mexico Environments
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August 2014 |
Cytochrome P450 Alkane Hydroxylases of the CYP153 Family Are Common in Alkane-Degrading Eubacteria Lacking Integral Membrane Alkane Hydroxylases
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January 2006 |
Characterization of five genes in the upper-pathway operon of TOL plasmid pWW0 from Pseudomonas putida and identification of the gene products.
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September 1989 |
Fallout plume of submerged oil from Deepwater Horizon
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October 2014 |
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
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November 2009 |
Analysis of Composition and Structure of Coastal to Mesopelagic Bacterioplankton Communities in the Northern Gulf of Mexico
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January 2013 |
Distribution of hydrocarbons released during the 2010 MC252 oil spill in deep offshore waters
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February 2013 |
HTSeq--a Python framework to work with high-throughput sequencing data
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September 2014 |
Accelerated Profile HMM Searches
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October 2011 |
Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3−/NO2− reduction pathways in Shewanella loihica strain PV-4
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October 2014 |
Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities
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April 2014 |
Towards a Genome-Based Taxonomy for Prokaryotes
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September 2005 |
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
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May 2013 |
Purification and Characterization of an Arene cis-Dihydrodiol Dehydrogenase Endowed with Broad Substrate Specificity toward Polycyclic Aromatic Hydrocarbon Dihydrodiols
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July 2006 |
SmoXYB1C1Z of Mycobacterium sp. Strain NBB4: a Soluble Methane Monooxygenase (sMMO)-Like Enzyme, Active on C 2 to C 4 Alkanes and Alkenes
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July 2014 |
Stable isotope evidence for alternative bacterial carbon sources in the Gulf of Mexico
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December 1998 |
Single-cell genomics reveals features of a Colwellia species that was dominant during the Deepwater Horizon oil spill
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July 2014 |
Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill
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January 2013 |
The environmental controls that govern the end product of bacterial nitrate respiration
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August 2014 |
Fast gapped-read alignment with Bowtie 2
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March 2012 |
Transcriptional response of bathypelagic marine bacterioplankton to the Deepwater Horizon oil spill
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August 2013 |
Succession of Hydrocarbon-Degrading Bacteria in the Aftermath of the Deepwater Horizon Oil Spill in the Gulf of Mexico
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September 2013 |
Regiospecificity of Two Multicomponent Monooxygenases from Pseudomonas stutzeri OX1: Molecular Basis for Catabolic Adaptation of This Microorganism to Methylated Aromatic Compounds
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August 2005 |
Why Orange Guaymas Basin Beggiatoa spp. Are Orange: Single-Filament-Genome-Enabled Identification of an Abundant Octaheme Cytochrome with Hydroxylamine Oxidase, Hydrazine Oxidase, and Nitrite Reductase Activities
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December 2012 |
Biostimulation induces syntrophic interactions that impact C, S and N cycling in a sediment microbial community
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November 2012 |
Exxon Valdez Vs. Deepwater Horizon: ES&T’s Top Feature Article 2011
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March 2012 |
Big Bacteria
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October 2001 |
Deep-sea bacteria enriched by oil and dispersant from the Deepwater Horizon spill: Enrichment of oil degraders from Gulf of Mexico
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May 2012 |
A Persistent Oxygen Anomaly Reveals the Fate of Spilled Methane in the Deep Gulf of Mexico
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January 2011 |
The Sequence Alignment/Map format and SAMtools
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June 2009 |
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
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October 2013 |
Alkane degradation under anoxic conditions by a nitrate-reducing bacterium with possible involvement of the electron acceptor in substrate activation: Alkane degradation with nitrate
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February 2011 |
Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
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December 2011 |
Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria
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August 2010 |
Analysis of the Novel Benzylsuccinate Synthase Reaction for Anaerobic Toluene Activation Based on Structural Studies of the Product
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January 1998 |
Genome Sequence of the Pyrene- and Fluoranthene-Degrading Bacterium Cycloclasticus sp. Strain PY97M
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June 2013 |
Isolation of Marine Polycyclic Aromatic Hydrocarbon (PAH)-Degrading Cycloclasticus Strains from the Gulf of Mexico and Comparison of Their PAH Degradation Ability with That of Puget Sound Cycloclasticus Strains
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December 1998 |
Nitrate ammonification by Nautilia profundicola AmH: experimental evidence consistent with a free hydroxylamine intermediate
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January 2013 |