The InterPro protein families database: the classification resource after 15 years
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journal
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November 2014 |
Energy metabolism in Desulfovibrio vulgaris Hildenborough: insights from transcriptome analysis
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December 2007 |
Direct Interspecies Electron Transfer between Geobacter metallireducens and Methanosarcina barkeri
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May 2014 |
Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry
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February 2007 |
Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry
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July 2009 |
Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction
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February 2016 |
KAAS: an automatic genome annotation and pathway reconstruction server
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May 2007 |
Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane : The partner bacterium in thermophilic methanotrophy
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journal
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April 2016 |
Dethiobacter alkaliphilus gen. nov. sp. nov., and Desulfurivibrio alkaliphilus gen. nov. sp. nov.: two novel representatives of reductive sulfur cycle from soda lakes
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March 2008 |
Syntrophic growth with direct interspecies electron transfer as the primary mechanism for energy exchange: Growth with electrons supplied solely by DIET
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September 2013 |
A protein trisulfide couples dissimilatory sulfate reduction to energy conservation
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December 2015 |
Nitrate-based niche differentiation by distinct sulfate-reducing bacteria involved in the anaerobic oxidation of methane
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September 2013 |
The “bacterial heterodisulfide” DsrC is a key protein in dissimilatory sulfur metabolism
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July 2014 |
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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January 2015 |
Transcriptomic and Genetic Analysis of Direct Interspecies Electron Transfer
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February 2013 |
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
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January 2015 |
Single cell activity reveals direct electron transfer in methanotrophic consortia
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September 2015 |
Changes in Protein Expression Across Laboratory and Field Experiments in Geobacter bemidjiensis
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February 2015 |
Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics
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September 2004 |
Microbial electron transport and energy conservation – the foundation for optimizing bioelectrochemical systems
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June 2015 |
Coupling a Detergent Lysis/Cleanup Methodology with Intact Protein Fractionation for Enhanced Proteome Characterization
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journal
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October 2012 |
Development of an Enhanced Metaproteomic Approach for Deepening the Microbiome Characterization of the Human Infant Gut
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journal
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October 2014 |
Gene expression and deletion analysis of mechanisms for electron transfer from electrodes to Geobacter sulfurreducens
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journal
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February 2011 |
Marine sediments microbes capable of electrode oxidation as a surrogate for lithotrophic insoluble substrate metabolism
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January 2015 |
Direct Cellular Lysis/Protein Extraction Protocol for Soil Metaproteomics
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journal
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December 2010 |
Methyl sulfides as intermediates in the anaerobic oxidation of methane
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journal
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September 2007 |
Distribution and in situ abundance of sulfate-reducing bacteria in diverse marine hydrocarbon seep sediments : Sulfate-reducing bacteria at marine hydrocarbon seeps
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journal
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August 2012 |
Direct Exchange of Electrons Within Aggregates of an Evolved Syntrophic Coculture of Anaerobic Bacteria
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journal
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December 2010 |
Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities
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journal
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April 2016 |
Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane
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journal
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February 2016 |
Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum
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journal
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July 2016 |
The FlxABCD-HdrABC proteins correspond to a novel NADH dehydrogenase/heterodisulfide reductase widespread in anaerobic bacteria and involved in ethanol metabolism in D esulfovibrio vulgaris Hildenborough : Role of FlxABCD-HdrABC in
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journal
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January 2015 |
A Comparative Genomic Analysis of Energy Metabolism in Sulfate Reducing Bacteria and Archaea
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journal
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January 2011 |
Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors
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journal
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November 2006 |
Spatial distribution of nitrogen fixation in methane seep sediment and the role of the ANME archaea: Nitrogen fixation in methane seep sediment
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journal
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September 2013 |
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
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journal
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February 2016 |
Dosage-Dependent Proteome Response of Shewanella oneidensis MR-1 to Acute Chromate Challenge
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journal
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May 2007 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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journal
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January 2014 |
Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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journal
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October 2013 |
Environmental proteomics reveals early microbial community responses to biostimulation at a uranium- and nitrate-contaminated site
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journal
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August 2013 |
A new model for electron flow during anaerobic digestion: direct interspecies electron transfer to Methanosaeta for the reduction of carbon dioxide to methane
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journal
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January 2014 |
Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock
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journal
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October 2016 |
Comparative Analysis of Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in Anoxic Marine Sediments
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journal
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April 2001 |
Towards a Genome-Based Taxonomy for Prokaryotes
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journal
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September 2005 |
Roles of HynAB and Ech, the Only Two Hydrogenases Found in the Model Sulfate Reducer Desulfovibrio gigas
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journal
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August 2013 |
Diverse syntrophic partnerships from deep-sea methane vents revealed by direct cell capture and metagenomics
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journal
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May 2008 |
Genomic analyses of bacterial porin-cytochrome gene clusters
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journal
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November 2014 |
BLAST+: architecture and applications
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journal
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January 2009 |
A marine microbial consortium apparently mediating anaerobic oxidation of methane
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journal
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October 2000 |
Metagenome and mRNA expression analyses of anaerobic methanotrophic archaea of the ANME-1 group
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journal
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February 2010 |
Thermophilic anaerobic oxidation of methane by marine microbial consortia
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journal
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June 2011 |
The ‘porin-cytochrome’ model for microbe-to-mineral electron transfer: Microbe-to-mineral electron transfer
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journal
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May 2012 |
Identification of the dominant sulfate-reducing bacterial partner of anaerobic methanotrophs of the ANME-2 clade: SEEP-SRB1 associated with ANME-2
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journal
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July 2010 |
Diversity and Abundance of Aerobic and Anaerobic Methane Oxidizers at the Haakon Mosby Mud Volcano, Barents Sea
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journal
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March 2007 |
Deep-Sea Archaea Fix and Share Nitrogen in Methane-Consuming Microbial Consortia
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journal
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October 2009 |
Comparative genomics of freshwater Fe-oxidizing bacteria: implications for physiology, ecology, and systematics
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journal
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January 2013 |
Molecular Dynamics of the Shewanella oneidensis Response to Chromate Stress
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journal
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March 2006 |
Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments: Proteogenomics of ANME-1 in cold seep sediments
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journal
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March 2012 |
Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria
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journal
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October 2015 |
Energy-Converting [NiFe] Hydrogenases from Archaea and Extremophiles: Ancestors of Complex I
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journal
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February 2004 |
Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
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journal
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January 2013 |
GroopM: an automated tool for the recovery of population genomes from related metagenomes
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journal
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January 2014 |
MUSCLE: multiple sequence alignment with high accuracy and high throughput
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journal
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March 2004 |
MyriMatch: Highly Accurate Tandem Mass Spectral Peptide Identification by Multivariate Hypergeometric Analysis
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journal
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February 2007 |
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
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journal
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April 2011 |
Exploration of the ‘cytochromome’ of Desulfuromonas acetoxidans, a marine bacterium capable of powering microbial fuel cells
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journal
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January 2011 |
The Qrc Membrane Complex, Related to the Alternative Complex III, Is a Menaquinone Reductase Involved in Sulfate Respiration
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journal
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May 2010 |
Extracellular electron transfer mechanisms between microorganisms and minerals
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journal
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August 2016 |
Metaproteomics : Harnessing the Power of High Performance Mass Spectrometry to Identify the Suite of Proteins That Control Metabolic Activities in Microbial Communities
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journal
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March 2013 |
UniProt: a hub for protein information
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journal
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October 2014 |
Seafloor oxygen consumption fuelled by methane from cold seeps
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journal
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August 2013 |
Methane-Consuming Archaea Revealed by Directly Coupled Isotopic and Phylogenetic Analysis
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journal
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July 2001 |
Cytochromes c in Archaea: distribution, maturation, cell architecture, and the special case of Ignicoccus hospitalis
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journal
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May 2015 |
Electron transfer between the QmoABC membrane complex and adenosine 5′-phosphosulfate reductase
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journal
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April 2016 |
The Tmc Complex from Desulfovibrio vulgaris Hildenborough Is Involved in Transmembrane Electron Transfer from Periplasmic Hydrogen Oxidation †
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journal
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August 2006 |
Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane
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journal
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September 2008 |
Methanotrophic archaea possessing diverging methane-oxidizing and electron-transporting pathways
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journal
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December 2013 |
Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I and ANME-II communities
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journal
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January 2005 |
Phylogenomic analysis of Candidatus ‘Izimaplasma’ species: free-living representatives from a Tenericutes clade found in methane seeps
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journal
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April 2016 |
Coriander Genomics Database: a genomic, transcriptomic, and metabolic database for coriander
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journal
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April 2020 |
Thermophilic anaerobic oxidation of methane by marine microbial consortia
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text
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January 2011 |
Assimilation of methane and inorganic carbon by microbial communities mediating the anaerobic oxidation of methane
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text
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January 2008 |
Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry
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text
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January 2009 |
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
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text
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January 2014 |
Diversity and Abundance of Aerobic and Anaerobic Methane Oxidizers at the Haakon Mosby Mud Volcano, Barents Sea
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text
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January 2007 |
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
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preprint
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January 2014 |