New technologies accelerate the exploration of non-coding RNAs in horticultural plants

Liu, Degao; Mewalal, Ritesh; Hu, Rongbin; Tuskan, Gerald A.; Yang, Xiaohan

doi:10.1038/hortres.2017.31

New technologies accelerate the exploration of non-coding RNAs in horticultural plants

Journal Article · Wed Jul 05 00:00:00 EDT 2017 · Horticulture Research

DOI:https://doi.org/10.1038/hortres.2017.31· OSTI ID:1393820

Liu, Degao; Mewalal, Ritesh; Hu, Rongbin; Tuskan, Gerald A.; Yang, Xiaohan

Non-coding RNAs (ncRNAs), that is, RNAs not translated into proteins, are crucial regulators of a variety of biological processes in plants. While protein-encoding genes have been relatively well-annotated in sequenced genomes, accounting for a small portion of the genome space in plants, the universe of plant ncRNAs is rapidly expanding. Recent advances in experimental and computational technologies have generated a great momentum for discovery and functional characterization of ncRNAs. Here we summarize the classification and known biological functions of plant ncRNAs, review the application of next-generation sequencing (NGS) technology and ribosome profiling technology to ncRNA discovery in horticultural plants and discuss the application of new technologies, especially the new genome-editing tool clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated protein 9 (Cas9) systems, to functional characterization of plant ncRNAs.

Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC05-00OR22725

OSTI ID:: 1393820

Journal Information:: Horticulture Research, Journal Name: Horticulture Research Journal Issue: 17031 Vol. 4; ISSN 2052-7276

Country of Publication:: United States

Language:: English

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