skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Plant cell wall glycosyltransferases: High-throughput recombinant expression screening and general requirements for these challenging enzymes

Journal Article · · PLoS ONE

Molecular characterization of plant cell wall glycosyltransferases is a critical step towards understanding the biosynthesis of the complex plant cell wall, and ultimately for efficient engineering of biofuel and agricultural crops. The majority of these enzymes have proven very difficult to obtain in the needed amount and purity for such molecular studies, and recombinant cell wall glycosyltransferase production efforts have largely failed. A daunting number of strategies can be employed to overcome this challenge, including optimization of DNA and protein sequences, choice of expression organism, expression conditions, coexpression partners, purification methods, and optimization of protein solubility and stability. Hence researchers are presented with thousands of potential conditions to test. Ultimately, the subset of conditions that will be sampled depends on practical considerations and prior knowledge of the enzyme(s) being studied. We have developed a rational approach to this process. We devise a pipeline comprising in silico selection of targets and construct design, and high-throughput expression screening, target enrichment, and hit identification. We have applied this pipeline to a test set of Arabidopsis thaliana cell wall glycosyltransferases known to be challenging to obtain in soluble form, as well as to a library of cell wall glycosyltransferases from other plants including agricultural and biofuel crops. The screening results suggest that recombinant cell wall glycosyltransferases in general have a very low soluble: Insoluble ratio in lysates from heterologous expression cultures, and that co-expression of chaperones as well as lysis buffer optimization can increase this ratio. We have applied the identified preferred conditions to Reversibly Glycosylated Polypeptide 1 from Arabidopsis thaliana, and processed this enzyme to near-purity in unprecedented milligram amounts. The obtained preparation of Reversibly Glycosylated Polypeptide 1 has the expected arabinopyranose mutase and autoglycosylation activities.This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1372595
Alternate ID(s):
OSTI ID: 1379873
Journal Information:
PLoS ONE, Journal Name: PLoS ONE Vol. 12 Journal Issue: 6; ISSN 1932-6203
Publisher:
Public Library of Science (PLoS)Copyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 13 works
Citation information provided by
Web of Science

References (36)

Improved performance in protein secondary structure prediction by inhomogeneous score combination journal May 1999
Folding at the rhythm of the rare codon beat journal August 2008
Production of tranilast [N-(3′,4′-dimethoxycinnamoyl)-anthranilic acid] and its analogs in yeast Saccharomyces cerevisiae journal October 2010
Oxidized redox state of glutathione in the endoplasmic reticulum journal September 1992
Xylan biosynthesis journal April 2014
The Pairwise Energy Content Estimated from Amino Acid Composition Discriminates between Folded and Intrinsically Unstructured Proteins journal April 2005
Pathways of disulfide bond formation in Escherichia coli journal January 2006
A plant mutase that interconverts UDP-arabinofuranose and UDP-arabinopyranose journal December 2006
Complex formation regulates the glycosylation of the reversibly glycosylated polypeptide journal March 2007
Exploring the limits of nearest neighbour secondary structure prediction journal July 1997
The carbohydrate-active enzymes database (CAZy) in 2013 journal November 2013
A sparse matrix approach to the solubilization of overexpressed proteins journal January 2000
Photosynthetic biomanufacturing in green algae; production of recombinant proteins for industrial, nutritional, and medical uses journal March 2014
Heterologous Protein Expression Is Enhanced by Harmonizing the Codon Usage Frequencies of the Target Gene with those of the Expression Host journal May 2008
GlobPlot: exploring protein sequences for globularity and disorder journal July 2003
NPS@: Network Protein Sequence Analysis journal March 2000
Plant Glycosyltransferases Beyond CAZy: A Perspective on DUF Families journal January 2012
Golgi-localized enzyme complexes for plant cell wall biosynthesis journal January 2013
Fast, scalable generation of high‐quality protein multiple sequence alignments using Clustal Omega journal January 2011
Domain enhanced lookup time accelerated BLAST journal January 2012
Glycosyltransferases: Structures, Functions, and Mechanisms journal June 2008
Purification and Biochemical Characterization of Recombinant Rice UDP-Arabinopyranose Mutase Generated in Insect Cells journal January 2010
A Thioredoxin Gene Fusion Expression System That Circumvents Inclusion Body Formation in the E. coli Cytoplasm journal February 1993
Universal phosphatase-coupled glycosyltransferase assay journal November 2010
Analysis of the Arabidopsis Cytosolic Proteome Highlights Subcellular Partitioning of Central Plant Metabolism journal April 2011
Isolation and Proteomic Characterization of the Arabidopsis Golgi Defines Functional and Novel Components Involved in Plant Cell Wall Biosynthesis journal March 2012
Cloning and Characterization of AtRGP1 : A Reversibly Autoglycosylated Arabidopsis Protein Implicated in Cell Wall Biosynthesis journal April 1998
Recombinant protein expression in Escherichia coli: advances and challenges journal April 2014
Pfam: the protein families database journal November 2013
The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome: Tair: Making and Mining the “Gold Standard” Plant Genome journal August 2015
The Interconversion of UDP-Arabinopyranose and UDP-Arabinofuranose Is Indispensable for Plant Development in Arabidopsis journal April 2011
Identification and application of the concepts important for accurate and reliable protein secondary structure prediction journal November 1996
Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence journal January 1996
Arabidopsis Reversibly Glycosylated Polypeptides 1 and 2 Are Essential for Pollen Development journal October 2006
Glucosylation Activity and Complex Formation of Two Classes of Reversibly Glycosylated Polypeptides journal April 2002
A Combined Transmembrane Topology and Signal Peptide Prediction Method journal May 2004

Cited By (5)

Decoupling of recombinant protein production from Escherichia coli cell growth enhances functional expression of plant Leloir glycosyltransferases journal February 2019
Molecular characteristics of plant UDP-arabinopyranose mutases journal May 2019
Transcriptomic and proteomic analysis reveals wall-associated and glucan-degrading proteins with potential roles in Phytophthora infestans sexual spore development journal June 2018
Critical Review of Plant Cell Wall Matrix Polysaccharide Glycosyltransferase Activities Verified by Heterologous Protein Expression journal July 2019
The Suitability of Orthogonal Hosts to Study Plant Cell Wall Biosynthesis journal November 2019