Bacterial Biogeography across the Amazon River-Ocean Continuum

Doherty, Mary; Yager, Patricia L.; Moran, Mary Ann; Coles, Victoria J.; Fortunato, Caroline S.; Krusche, Alex V.; Medeiros, Patricia M.; Payet, Jerome P.; Richey, Jeffrey E.; Satinsky, Brandon M.; Sawakuchi, Henrique O.; Ward, Nicholas D.; Crump, Byron C.

doi:10.3389/fmicb.2017.00882

Title: Bacterial Biogeography across the Amazon River-Ocean Continuum

Journal Article · Tue May 23 00:00:00 EDT 2017 · Frontiers in Microbiology

DOI:https://doi.org/10.3389/fmicb.2017.00882· OSTI ID:1371969

Doherty, Mary ^[1]; Yager, Patricia L. ^[2]; Moran, Mary Ann ^[2]; Coles, Victoria J. ^[1]; Fortunato, Caroline S. ^[3]; Krusche, Alex V. ^[4]; Medeiros, Patricia M. ^[2]; Payet, Jerome P. ^[5]; Richey, Jeffrey E. ^[6]; Satinsky, Brandon M. ^[7]; Sawakuchi, Henrique O. ^[4]; Ward, Nicholas D. ^[8]; Crump, Byron C. ^[5]

University of Maryland Center for Environmental Science, Cambridge, MD (United States). Horn Point Laboratory
Univ. of Georgia, Athens, GA (United States). Department of Marine Sciences
Marine Biological Laboratory, Woods Hole, MA (United States). Josephine Bay Paul Center
University of São Paulo, Piracicaba (Brazil). Center of Nuclear Energy in Agriculture
Oregon State Univ., Corvallis, OR (United States). College of Earth, Ocean, and Atmospheric Sciences
Univ. of Washington, Seattle, WA (United States). School of Oceanography
Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States)
Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Marine Sciences Laboratory

Spatial and temporal patterns in microbial biodiversity across the Amazon river-ocean continuum were investigated along ~675 km of the lower Amazon River mainstem, in the Tapajos River tributary, and in the plume and coastal ocean during low and high river discharge using amplicon sequencing of 16S rRNA genes in whole water and size-fractionated samples (0.2-2.0 μm and >2.0 μm). River communities varied among tributaries, but mainstem communities were spatially homogeneous and tracked seasonal changes in river discharge and co-varying factors. Co-occurrence network analysis identified strongly interconnected river assemblages during high (May) and low (December) discharge periods, and weakly interconnected transitional assemblages in September, suggesting that this system supports two seasonal microbial communities linked to river discharge. In contrast, plume communities showed little seasonal differences and instead varied spatially tracking salinity. However, salinity explained only a small fraction of community variability, and plume communities in blooms of diatom-diazotroph assemblages were strikingly different than those in other high salinity plume samples. This suggests that while salinity physically structures plumes through buoyancy and mixing, the composition of plume-specific communities is controlled by other factors including nutrients, phytoplankton community composition, and dissolved organic matter chemistry. Co-occurrence networks identified interconnected assemblages associated with the highly productive low salinity nearshore region, diatom-diazotroph blooms, and the plume edge region, and weakly interconnected assemblages in high salinity regions. This suggests that the plume supports a transitional community influenced by immigration of ocean bacteria from the plume edge, and by species sorting as these communities adapt to local environmental conditions. Few studies have explored patterns of microbial diversity in tropical rivers and coastal oceans. Comparison of Amazon continuum microbial communities to those from temperate and arctic systems suggest that river discharge and salinity are master variables structuring a range of environmental conditions that control bacterial communities across the river-ocean continuum.

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Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 1371969

Report Number(s):: PNNL-SA-125962

Journal Information:: Frontiers in Microbiology, Vol. 8; ISSN 1664-302X

Publisher:: Frontiers Research FoundationCopyright Statement

Country of Publication:: United States

Language:: English

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Cited by: 56 works

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58 GEOSCIENCES
59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
Amazon
aquatic
marine
continuum
terrestrial
interface
ecosystem
microbial
bacteria
genomic
metagenome
river
coastal
estuarine
carbon
sequence
biology

Title: Bacterial Biogeography across the Amazon River-Ocean Continuum

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