Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, Nicolas; Moline, Martin; David-Palma, Marcia; Coelho, Marco A.; Hittinger, Chris Todd; Sampaio, Jose P.; Goncalves, Paula; Libkind, Diego

doi:10.1186/s12864-016-3244-7

Title: Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Journal Article · Wed Nov 09 00:00:00 EST 2016 · BMC Genomics

DOI:https://doi.org/10.1186/s12864-016-3244-7· OSTI ID:1363950

Bellora, Nicolas ^[1]; Moline, Martin ^[1]; David-Palma, Marcia ^[2]; Coelho, Marco A. ^[2]; Hittinger, Chris Todd ^[3]; Sampaio, Jose P. ^[2]; Goncalves, Paula ^[2];

^[1]

Instituto Andino-Patagonico de Tecnologias Biologicas y Geoambientales (IPATEC), Bariloche (Argentina)
Univ. Nova de Lisboa, Caparica (Portugal)
Univ. of Wisconsin, Madison, WI (United States)

The class Tremellomycete (Agaricomycotina) encompasses more than 380 fungi. Although there are a few edible Tremella spp., the only species with current biotechnological use is the astaxanthin-producing yeast Phaffia rhodozyma (Cystofilobasidiales). Besides astaxanthin, a carotenoid pigment with potent antioxidant activity and great value for aquaculture and pharmaceutical industries, P. rhodozyma possesses multiple exceptional traits of fundamental and applied interest. The aim of this study was to obtain, and analyze two new genome sequences of representative strains from the northern (CBS 7918^T, the type strain) and southern hemispheres (CRUB 1149) and compre them to a previously published genome sequence (strain CBS 6938). Furthermore, photoprotection and antioxidant related genes, as well as genes involved in sexual reproduction were analyzed.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Univ. of Wisconsin, Madison, WI (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: FC02-07ER64494

OSTI ID:: 1363950

Journal Information:: BMC Genomics, Vol. 17, Issue 1; ISSN 1471-2164

Publisher:: SpringerCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 28 works

Citation information provided by
Web of Science

References (80)

Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species Gostinčar, Cene; Ohm, Robin A.; Kogej, Tina BMC Genomics, Vol. 15, Issue 1 https://doi.org/10.1186/1471-2164-15-549	journal	January 2014
UV Sunscreens of Microbial Origin: Mycosporines and Mycosporine- like Aminoacids Colabella, Fernando; Moline, Martin; Libkind, Diego Recent Patents on Biotechnology, Vol. 8, Issue 3 https://doi.org/10.2174/1872208309666150102104520	journal	June 2015
Production of the UVB-absorbing compound mycosporine-glutaminol-glucoside by Xanthophyllomyces dendrorhous (Phaffia rhodozyma): Mycosporines in Xanthophyllomyces Libkind, Diego; Moline, Martín; van Broock, María FEMS Yeast Research, Vol. 11, Issue 1 https://doi.org/10.1111/j.1567-1364.2010.00688.x	journal	October 2010
Redundant Pathways of Sunscreen Biosynthesis in a Cyanobacterium Spence, Edward; Dunlap, Walter C.; Shick, J. Malcolm ChemBioChem, Vol. 13, Issue 4 https://doi.org/10.1002/cbic.201100737	journal	January 2012
Singlet Oxygen and Peroxyl Radicals Regulate Carotenoid Biosynthesis in Phaffia rhodozyma Schroeder, William A.; Johnson, Eric A. Journal of Biological Chemistry, Vol. 270, Issue 31 https://doi.org/10.1074/jbc.270.31.18374	journal	August 1995
Identification and analysis of metabolite production with biotechnological potential in Xanthophyllomyces dendrorhous isolates Contreras, Gabriela; Barahona, Salvador; Sepúlveda, Dionisia World Journal of Microbiology and Biotechnology, Vol. 31, Issue 3 https://doi.org/10.1007/s11274-015-1808-3	journal	February 2015
Evolution of Catalases from Bacteria to Humans Zamocky, Marcel; Furtmüller, Paul G.; Obinger, Christian Antioxidants & Redox Signaling, Vol. 10, Issue 9 https://doi.org/10.1089/ars.2008.2046	journal	September 2008
Mycosporines in carotenogenic yeasts Libkind, Diego; Sommaruga, Ruben; Zagarese, Horacio Systematic and Applied Microbiology, Vol. 28, Issue 8 https://doi.org/10.1016/j.syapm.2005.05.005	journal	October 2005
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Altschul, Stephen F.; Madden, Thomas L.; Schäffer, Alejandro A. Nucleic Acids Research, Vol. 25, Issue 17, p. 3389-3402 https://doi.org/10.1093/nar/25.17.3389	journal	September 1997
Ustilago maydis accumulates β-carotene at levels determined by a retinal-forming carotenoid oxygenase Estrada, Alejandro F.; Brefort, Thomas; Mengel, Carina Fungal Genetics and Biology, Vol. 46, Issue 10 https://doi.org/10.1016/j.fgb.2009.06.011	journal	October 2009
A Probabilistic Model of Local Sequence Alignment That Simplifies Statistical Significance Estimation Eddy, Sean R. PLoS Computational Biology, Vol. 4, Issue 5 https://doi.org/10.1371/journal.pcbi.1000069	journal	May 2008
GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations Gremme, Gordon; Steinbiss, Sascha; Kurtz, Stefan IEEE/ACM Transactions on Computational Biology and Bioinformatics, Vol. 10, Issue 3 https://doi.org/10.1109/TCBB.2013.68	journal	May 2013
Antioxidant role of carotenoids in Phaffia rhodozyma Schroeder, W. A.; Johnson, E. A. Journal of General Microbiology, Vol. 139, Issue 5 https://doi.org/10.1099/00221287-139-5-907	journal	May 1993
Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research Conesa, A.; Gotz, S.; Garcia-Gomez, J. M. Bioinformatics, Vol. 21, Issue 18 https://doi.org/10.1093/bioinformatics/bti610	journal	August 2005
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.0955	journal	March 1997
Manganese superoxide dismutase in pathogenic fungi: An issue with pathophysiological and phylogenetic involvements FrÃ©alle, Emilie; NoÃ«l, Christophe; Viscogliosi, Eric FEMS Immunology & Medical Microbiology, Vol. 45, Issue 3 https://doi.org/10.1016/j.femsim.2005.06.003	journal	September 2005
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models Stamatakis, Alexandros Bioinformatics, Vol. 22, Issue 21 https://doi.org/10.1093/bioinformatics/btl446	journal	August 2006
Biotechnological production of astaxanthin with Phaffia rhodozyma/Xanthophyllomyces dendrorhous Schmidt, Isabell; Schewe, Hendrik; Gassel, Sören Applied Microbiology and Biotechnology, Vol. 89, Issue 3 https://doi.org/10.1007/s00253-010-2976-6	journal	November 2010
Remarkably ancient balanced polymorphisms in a multi-locus gene network Hittinger, Chris Todd; Gonçalves, Paula; Sampaio, José Paulo Nature, Vol. 464, Issue 7285 https://doi.org/10.1038/nature08791	journal	February 2010
Hydrogen peroxide-induced astaxanthin biosynthesis and catalase activity in Xanthophyllomyces dendrorhous Liu, Yuan Shuai; Wu, Jian Yong Applied Microbiology and Biotechnology, Vol. 73, Issue 3 https://doi.org/10.1007/s00253-006-0501-8	journal	August 2006
Differential carotenoid production and gene expression in Xanthophyllomyces dendrorhous grown in a nonfermentable carbon source: Carotenogenesis regulation in Xanthophyllomyces dendrorhous Wozniak, Aniela; Lozano, Carla; Barahona, Salvador FEMS Yeast Research, Vol. 11, Issue 3 https://doi.org/10.1111/j.1567-1364.2010.00711.x	journal	January 2011
Genetic Dissection of Sexual Reproduction in a Primary Homothallic Basidiomycete David-Palma, Márcia; Sampaio, José Paulo; Gonçalves, Paula PLOS Genetics, Vol. 12, Issue 6 https://doi.org/10.1371/journal.pgen.1006110	journal	June 2016
Genetic Circuits that Govern Bisexual and Unisexual Reproduction in Cryptococcus neoformans Feretzaki, Marianna; Heitman, Joseph PLoS Genetics, Vol. 9, Issue 8 https://doi.org/10.1371/journal.pgen.1003688	journal	August 2013
Phaffiaol, a New Antioxidant Isolated from a Yeast Phaffia rhodozym. Jinno, Shuji; Hata, Kazuhiko; Shimidzu, Nobuyoshi The Journal of Antibiotics, Vol. 51, Issue 5 https://doi.org/10.7164/antibiotics.51.508	journal	January 1998
Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus Peris, David; Langdon, Quinn K.; Moriarty, Ryan V. PLOS Genetics, Vol. 12, Issue 7 https://doi.org/10.1371/journal.pgen.1006155	journal	July 2016
Global distribution, diversity hot spots and niche transitions of an astaxanthin-producing eukaryotic microbe David-Palma, Márcia; Libkind, Diego; Sampaio, José Paulo Molecular Ecology, Vol. 23, Issue 4 https://doi.org/10.1111/mec.12642	journal	January 2014
A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum Almeida, Pedro; Gonçalves, Carla; Teixeira, Sara Nature Communications, Vol. 5, Issue 1 https://doi.org/10.1038/ncomms5044	journal	June 2014
STE12, a protein involved in cell-type-specific transcription and signal transduction in yeast, is part of protein-DNA complexes. Errede, B.; Ammerer, G. Genes & Development, Vol. 3, Issue 9 https://doi.org/10.1101/gad.3.9.1349	journal	September 1989
Fungal catalases: Function, phylogenetic origin and structure Hansberg, Wilhelm; Salas-Lizana, Rodolfo; Domínguez, Laura Archives of Biochemistry and Biophysics, Vol. 525, Issue 2 https://doi.org/10.1016/j.abb.2012.05.014	journal	September 2012
Carotenoids protectPhaffia rhodozyma against singlet oxygen damage Schroeder, William A.; Johnson, Eric A. Journal of Industrial Microbiology, Vol. 14, Issue 6 https://doi.org/10.1007/BF01573965	journal	June 1995
Assessing the gene space in draft genomes Parra, Genis; Bradnam, Keith; Ning, Zemin Nucleic Acids Research, Vol. 37, Issue 1 https://doi.org/10.1093/nar/gkn916	journal	November 2008
A Deviation from the Bipolar-Tetrapolar Mating Paradigm in an Early Diverged Basidiomycete Coelho, Marco A.; Sampaio, José Paulo; Gonçalves, Paula PLoS Genetics, Vol. 6, Issue 8 https://doi.org/10.1371/journal.pgen.1001052	journal	August 2010
Evidence for Divergent Evolution of Growth Temperature Preference in Sympatric Saccharomyces Species Gonçalves, Paula; Valério, Elisabete; Correia, Cláudia PLoS ONE, Vol. 6, Issue 6 https://doi.org/10.1371/journal.pone.0020739	journal	June 2011
BLAT---The BLAST-Like Alignment Tool Kent, W. J. Genome Research, Vol. 12, Issue 4 https://doi.org/10.1101/gr.229202. Article published online before March 2002	journal	March 2002
"Glucose and ethanol-dependent transcriptional regulation of the astaxanthin biosynthesis pathway in Xanthophyllomyces dendrorhous" Marcoleta, Andrés; Niklitschek, Mauricio; Wozniak, Aniela BMC Microbiology, Vol. 11, Issue 1 https://doi.org/10.1186/1471-2180-11-190	journal	January 2011
Superoxide Radical and Superoxide Dismutases Fridovich, Irwin Annual Review of Biochemistry, Vol. 64, Issue 1 https://doi.org/10.1146/annurev.bi.64.070195.000525	journal	June 1995
Perfect state ofRhodomyces dendrorhous (Phaffia rhodozyma) Golubev, Wladyslav I. Yeast, Vol. 11, Issue 2 https://doi.org/10.1002/yea.320110202	journal	February 1995
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry Journal of Computational Biology, Vol. 19, Issue 5 https://doi.org/10.1089/cmb.2012.0021	journal	May 2012
A Detailed History of Intron-rich Eukaryotic Ancestors Inferred from a Global Survey of 100 Complete Genomes Csuros, Miklos; Rogozin, Igor B.; Koonin, Eugene V. PLoS Computational Biology, Vol. 7, Issue 9 https://doi.org/10.1371/journal.pcbi.1002150	journal	September 2011
A microbial consortium involving the astaxanthin producer Xanthophyllomyces dendrorhous on freshly cut birch stumps in Germany Weber, Roland W. S.; Davoli, Paolo; Anke, Heidrun Mycologist, Vol. 20, Issue 2 https://doi.org/10.1016/j.mycol.2006.03.010	journal	May 2006
PKA and MAPK phosphorylation of Prf1 allows promoter discrimination in Ustilago maydis Kaffarnik, F. The EMBO Journal, Vol. 22, Issue 21 https://doi.org/10.1093/emboj/cdg554	journal	November 2003
Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast Libkind, D.; Hittinger, C. T.; Valerio, E. Proceedings of the National Academy of Sciences, Vol. 108, Issue 35 https://doi.org/10.1073/pnas.1105430108	journal	August 2011
The Mating Type Locus (MAT) and Sexual Reproduction of Cryptococcus heveanensis: Insights into the Evolution of Sex and Sex-Determining Chromosomal Regions in Fungi Metin, Banu; Findley, Keisha; Heitman, Joseph PLoS Genetics, Vol. 6, Issue 5 https://doi.org/10.1371/journal.pgen.1000961	journal	May 2010
Biogeography, Host Specificity, and Molecular Phylogeny of the Basidiomycetous Yeast Phaffia rhodozyma and Its Sexual Form, Xanthophyllomyces dendrorhous Libkind, D.; Ruffini, A.; van Broock, M. Applied and Environmental Microbiology, Vol. 73, Issue 4 https://doi.org/10.1128/AEM.01432-06	journal	December 2006
Evolution of Mating Systems in Basidiomycetes and the Genetic Architecture Underlying Mating-Type Determination in the Yeast Leucosporidium scottii Maia, Teresa M.; Lopes, Susana T.; Almeida, João M. G. C. F. Genetics, Vol. 201, Issue 1 https://doi.org/10.1534/genetics.115.177717	journal	July 2015
The evolutionary origin of orphan genes Tautz, Diethard; Domazet-Lošo, Tomislav Nature Reviews Genetics, Vol. 12, Issue 10 https://doi.org/10.1038/nrg3053	journal	August 2011
Phaffia M.W. Miller, Yoneyama & Soneda (1976) Fell, Jack W.; Johnson, Eric A. The Yeasts https://doi.org/10.1016/B978-0-444-52149-1.00152-X	book	January 2011
Homothallic life cycle in the diploid red yeast Xanthophyllomyces dendrorhous (Phaffia rhodozyma) Kucsera, J.; Pfeiffer, I.; Ferenczy, L. Antonie van Leeuwenhoek, Vol. 73, Issue 2, p. 163-168 https://doi.org/10.1023/A:1000699626367	journal	January 1998
Proteomic and metabolomic analysis of the carotenogenic yeast Xanthophyllomyces dendrorhous using different carbon sources Martinez-Moya, Pilar; Niehaus, Karsten; Alcaíno, Jennifer BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1484-6	journal	April 2015
Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence Emanuelsson, Olof; Nielsen, Henrik; Brunak, Søren Journal of Molecular Biology, Vol. 300, Issue 4 https://doi.org/10.1006/jmbi.2000.3903	journal	July 2000
The genome of the basal agaricomycete Xanthophyllomyces dendrorhous provides insights into the organization of its acetyl-CoA derived pathways and the evolution of Agaricomycotina Sharma, Rahul; Gassel, Sören; Steiger, Sabine BMC Genomics, Vol. 16, Issue 1 https://doi.org/10.1186/s12864-015-1380-0	journal	March 2015
MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space Ronquist, Fredrik; Teslenko, Maxim; van der Mark, Paul Systematic Biology, Vol. 61, Issue 3 https://doi.org/10.1093/sysbio/sys029	journal	February 2012
Astaxanthin: Sources, Extraction, Stability, Biological Activities and Its Commercial Applications—A Review Ambati, Ranga; Phang, Siew-Moi; Ravi, Sarada Marine Drugs, Vol. 12, Issue 1 https://doi.org/10.3390/md12010128	journal	January 2014
Separation of strains of the yeasts Xanthophyllomyces dendrorhous and Phaffia rhodozyma based on rDNA IGS and ITS sequence analysis Fell, J. W.; Blatt, G. M. Journal of Industrial Microbiology and Biotechnology, Vol. 23, Issue 1 https://doi.org/10.1038/sj.jim.2900681	journal	July 1999
Carotenoids of Biotechnological Importance Sandmann, Gerhard Biotechnology of Isoprenoids https://doi.org/10.1007/10_2014_277	book	January 2014
MAFFT version 5: improvement in accuracy of multiple sequence alignment Katoh, K. Nucleic Acids Research, Vol. 33, Issue 2 https://doi.org/10.1093/nar/gki198	journal	January 2005
MUSCLE: multiple sequence alignment with high accuracy and high throughput Edgar, R. C. Nucleic Acids Research, Vol. 32, Issue 5, p. 1792-1797 https://doi.org/10.1093/nar/gkh340	journal	March 2004
Phaffia rhodozyma : colorful odyssey Johnson, Eric A. International Microbiology, Vol. 6, Issue 3 https://doi.org/10.1007/s10123-003-0130-3	journal	September 2003
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training Ter-Hovhannisyan, V.; Lomsadze, A.; Chernoff, Y. O. Genome Research, Vol. 18, Issue 12 https://doi.org/10.1101/gr.081612.108	journal	October 2008
Pfam: the protein families database Finn, Robert D.; Bateman, Alex; Clements, Jody Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1223	journal	November 2013
Characterization of a novel South American population of the astaxanthin producing yeast Xanthophyllomyces dendrorhous (Phaffia rhodozyma) Libkind, Diego; Moliné, Martín; de García, Virginia Journal of Industrial Microbiology & Biotechnology, Vol. 35, Issue 3 https://doi.org/10.1007/s10295-007-0275-8	journal	November 2007
Transcription Factors Mat2 and Znf2 Operate Cellular Circuits Orchestrating Opposite- and Same-Sex Mating in Cryptococcus neoformans Lin, Xiaorong; Jackson, Jennifer C.; Feretzaki, Marianna PLoS Genetics, Vol. 6, Issue 5 https://doi.org/10.1371/journal.pgen.1000953	journal	May 2010
Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids Peris, David; Sylvester, Kayla; Libkind, Diego Molecular Ecology, Vol. 23, Issue 8 https://doi.org/10.1111/mec.12702	journal	April 2014
Molecular evolution of hydrogen peroxide degrading enzymes Zámocký, Marcel; Gasselhuber, Bernhard; Furtmüller, Paul G. Archives of Biochemistry and Biophysics, Vol. 525, Issue 2 https://doi.org/10.1016/j.abb.2012.01.017	journal	September 2012
Repbase Update, a database of eukaryotic repetitive elements Jurka, J.; Kapitonov, V. V.; Pavlicek, A. Cytogenetic and Genome Research, Vol. 110, Issue 1-4 https://doi.org/10.1159/000084979	journal	January 2005
Enzyme-specific profiles for genome annotation: PRIAM Claudel-Renard, C. Nucleic Acids Research, Vol. 31, Issue 22 https://doi.org/10.1093/nar/gkg847	journal	November 2003
The Genetic and Molecular Basis for Sunscreen Biosynthesis in Cyanobacteria Balskus, E. P.; Walsh, C. T. Science, Vol. 329, Issue 5999 https://doi.org/10.1126/science.1193637	journal	September 2010
Genome Sequencing of Kocuria varians Strain 80, Isolated from Starter Culture for Dry Sausage Konorov, Evgenii A.; Kurbakov, Konstantin A.; Minaev, Mikhail Y. Microbiology Resource Announcements, Vol. 10, Issue 8 https://doi.org/10.1128/mra.00086-21	journal	February 2021
The genome of the basal agaricomycete Xanthophyllomyces dendrorhous provides insights into the organization of its acetyl-CoA derived pathways and the evolution of Agaricomycotina Thines, M. BiK-F Data and Metadata Repository https://doi.org/10.12761/sgn.2015.1	dataset	January 2015
Evolution of Mating Systems in Basidiomycetes and the Genetic Architecture Underlying Mating-Type Determination in the Yeast Leucosporidium scottii Maia, Teresa M.; Lopes, Susana T.; Almeida, João M. G. C. F. Genetics, Vol. 201, Issue 1, 75-89 https://doi.org/10.3410/f.725646016.793509002	journal	September 2015
Physiological roles of catalases Cat1 and Cat2 in Myxococcus xanthus Yoshio, Kimura; Yoshioka, Yuri; Toshikuni, Kie Journal of Microbiology, Vol. 60, Issue 12 https://doi.org/10.1007/s12275-022-2277-7	journal	October 2022
An ancient balancing act Skipper, Magdalena Nature Reviews Genetics, Vol. 11, Issue 4 https://doi.org/10.1038/nrg2770	journal	March 2010
Genetic basis for the establishment of endosymbiosis in Paramecium He, Ming; Wang, Jinfeng; Fan, Xinpeng The ISME Journal, Vol. 13, Issue 5 https://doi.org/10.1038/s41396-018-0341-4	journal	January 2019
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence Lowe, Todd M.; Eddy, Sean R. Nucleic Acids Research, Vol. 25, Issue 5 https://doi.org/10.1093/nar/25.5.955	journal	March 1997
BLAT---The BLAST-Like Alignment Tool Kent, W. J. Genome Research, Vol. 12, Issue 4 https://doi.org/10.1101/gr.229202	journal	March 2002
The Cryptococcus neoformans Catalase Gene Family and Its Role in Antioxidant Defense Giles, Steven S.; Stajich, Jason E.; Nichols, Connie Eukaryotic Cell, Vol. 5, Issue 9 https://doi.org/10.1128/ec.00098-06	journal	September 2006
Retinal Biosynthesis in Fungi: Characterization of the Carotenoid Oxygenase CarX from Fusarium fujikuroi Prado-Cabrero, Alfonso; Scherzinger, Daniel; Avalos, Javier Eukaryotic Cell, Vol. 6, Issue 4 https://doi.org/10.1128/ec.00392-06	journal	February 2007
Emiliania huxleyi endures N-limitation with an efficient metabolic budgeting and effective ATP synthesis Rokitta, Sebastian D.; Von Dassow, Peter; Rost, Björn BMC Genomics, Vol. 15, Issue 1 https://doi.org/10.1186/1471-2164-15-1051	journal	January 2014
UVB Photoprotective Role of Mycosporines in Yeast: Photostability and Antioxidant Activity of Mycosporine-Glutaminol-Glucoside Moliné, Martín; Arbeloa, Ernesto M.; Flores, María R. Radiation Research, Vol. 175, Issue 1 https://doi.org/10.1667/rr2245.1	journal	January 2011
The mating type locus (MAT) and sexual reproduction of Cryptococcus heveanensis: insights into the evolution of sex and sex-determining chromosomal regions in fungi Metin, Banu; Findley, Keisha; Heitman, Joseph PLoS Genetics, Vol. 6, Issue 5 https://doi.org/10.3410/f.3548981.3251087	journal	May 2010

Cited By (6)

Disruption of Phaffia rhodozyma cells and preparation of microencapsulated astaxanthin with high water solubility Chen, Li; Wang, Ji-Lian; Ni, Hua Food Science and Biotechnology, Vol. 28, Issue 1 https://doi.org/10.1007/s10068-018-0443-9	journal	August 2018
A common mechanism explains the induction of aerobic fermentation and adaptive antioxidant response in Phaffia rhodozyma Martínez-Cárdenas, Anahí; Chávez-Cabrera, Cipriano; Vasquez-Bahena, Jazmín M. Microbial Cell Factories, Vol. 17, Issue 1 https://doi.org/10.1186/s12934-018-0898-7	journal	April 2018
Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina Čadež, Neža; Bellora, Nicolas; Ulloa, Ricardo PLOS ONE, Vol. 14, Issue 1 https://doi.org/10.1371/journal.pone.0210792	journal	January 2019
Biosynthesis of Astaxanthin as a Main Carotenoid in the Heterobasidiomycetous Yeast Xanthophyllomyces dendrorhous Barredo, Jose; García-Estrada, Carlos; Kosalkova, Katarina Journal of Fungi, Vol. 3, Issue 3 https://doi.org/10.3390/jof3030044	journal	July 2017
Extending our tools and resources in the non-conventional industrial yeast Xanthophyllomyces dendrorhous through the application of metabolite profiling methodologies Alcalde, Eugenio; Fraser, Paul D. Metabolomics, Vol. 14, Issue 3 https://doi.org/10.1007/s11306-017-1313-9	journal	February 2018
Fungal Sex: The Basidiomycota Coelho, Marco A.; Bakkeren, Guus; Sun, Sheng The Fungal Kingdom https://doi.org/10.1128/9781555819583.ch7	book	September 2017

Linked Research (18)

Figures / Tables (7)

Similar Records

Astaxanthinogenesis in the yeast Phaffia rhodozyma - optimization of low-cost culture media and yeast cell-wall lysis

Journal Article · Wed Dec 31 00:00:00 EST 1997 · Applied Biochemistry and Biotechnology · OSTI ID:1363950

Fontana, J D; Baron, M; Guimaraes, M F

The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction

Journal Article · Sat Sep 03 00:00:00 EDT 2011 · Fungal Genetics and Biology · OSTI ID:1363950

Mahajabeen, Padamsee; Kumas, T. K. Arun; Riley, Robert; +18 more

Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme

Journal Article · Mon Nov 15 00:00:00 EST 2021 · G3 · OSTI ID:1363950

Guerreiro, Marco Alexandre; Ahrendt, Steven; Pangilinan, Jasmyn; +7 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
Xanthophyllomyces dendrorhous
mycosporines
aquaculture
phylogenomics
basidiomycete
mating type
photoprotection
yeast
type strain

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolas; Moline, Martin; David-Palma, Marcia https://doi.org/10.6084/m9.figshare.c.3618773 The current record is supplemented by this dataset	dataset	November 2016
Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma [Supplemental Data] Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773.v1 The current record is supplemented by this collection	collection	November 2016
Additional file 5: Figure S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d1 The current record is supplemented by this text	text	January 2016
Additional file 5: Figure S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d1.v1 The current record is supplemented by this figure	figure	November 2016
Additional file 8: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/M9.FIGSHARE.C.3618773_D2 The current record is supplemented by this dataset	dataset	January 2016
Additional file 8: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d2.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 3: Table S3. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d3 The current record is supplemented by this dataset	dataset	January 2016
Additional file 3: Table S3. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d3.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 1: Table S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/M9.FIGSHARE.C.3618773_D4 The current record is supplemented by this dataset	dataset	January 2016
Additional file 1: Table S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d4.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 7: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d5 The current record is supplemented by this dataset	dataset	January 2016
Additional file 7: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d5.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 4: Table S4. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/M9.FIGSHARE.C.3618773_D6 The current record is supplemented by this dataset	dataset	January 2016
Additional file 4: Table S4. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d6.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 2: Table S2. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d7 The current record is supplemented by this dataset	dataset	January 2016
Additional file 2: Table S2. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d7.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 6: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d8 The current record is supplemented by this dataset	dataset	January 2016
Additional file 6: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d8.v1 The current record is supplemented by this dataset	dataset	November 2016