Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Bellora, Nicolas; Moline, Martin; David-Palma, Marcia; Coelho, Marco A.; Hittinger, Chris Todd; Sampaio, Jose P.; Goncalves, Paula; Libkind, Diego

doi:10.1186/s12864-016-3244-7

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

Journal Article · Wed Nov 09 04:00:00 EST 2016 · BMC Genomics

DOI:https://doi.org/10.1186/s12864-016-3244-7· OSTI ID:1363950

Bellora, Nicolas ^[1]; Moline, Martin ^[2]; David-Palma, Marcia ^[3]; Coelho, Marco A. ^[3]; Hittinger, Chris Todd ^[4]; Sampaio, Jose P. ^[3]; Goncalves, Paula ^[3]; ^[2]

Instituto Andino-Patagonico de Tecnologias Biologicas y Geoambientales (IPATEC), Bariloche (Argentina); CONICET UNComahue, Inst Andino Patag nico Tecnologias Biol gicas Geo, Lab Microbiol Aplicada Biotecnol & Bioinformat Le, Inst Andinopatagon Tecnol Biol & Geoambientales I, Quintral 1250, RA-8400 San Carlos De Bariloche, Rio Negro, Argentina
Instituto Andino-Patagonico de Tecnologias Biologicas y Geoambientales (IPATEC), Bariloche (Argentina)
Univ. Nova de Lisboa, Caparica (Portugal)
Univ. of Wisconsin, Madison, WI (United States)

The class Tremellomycete (Agaricomycotina) encompasses more than 380 fungi. Although there are a few edible Tremella spp., the only species with current biotechnological use is the astaxanthin-producing yeast Phaffia rhodozyma (Cystofilobasidiales). Besides astaxanthin, a carotenoid pigment with potent antioxidant activity and great value for aquaculture and pharmaceutical industries, P. rhodozyma possesses multiple exceptional traits of fundamental and applied interest. The aim of this study was to obtain, and analyze two new genome sequences of representative strains from the northern (CBS 7918^T, the type strain) and southern hemispheres (CRUB 1149) and compre them to a previously published genome sequence (strain CBS 6938). Furthermore, photoprotection and antioxidant related genes, as well as genes involved in sexual reproduction were analyzed.

View Accepted Manuscript (DOE)

Research Organization:: Univ. of Wisconsin, Madison, WI (United States)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: FC02-07ER64494

OSTI ID:: 1363950

Journal Information:: BMC Genomics, Journal Name: BMC Genomics Journal Issue: 1 Vol. 17; ISSN 1471-2164

Publisher:: SpringerCopyright Statement

Country of Publication:: United States

Language:: English

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Figures / Tables (7)

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
Xanthophyllomyces dendrorhous
aquaculture
basidiomycete
mating type
mycosporines
photoprotection
phylogenomics
type strain
yeast

Additional file 8: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/M9.FIGSHARE.C.3618773_D2 The current record is supplemented by this dataset	dataset	January 2016
Additional file 1: Table S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/M9.FIGSHARE.C.3618773_D4 The current record is supplemented by this dataset	dataset	January 2016
Additional file 4: Table S4. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/M9.FIGSHARE.C.3618773_D6 The current record is supplemented by this dataset	dataset	January 2016
Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolas; Moline, Martin; David-Palma, Marcia https://doi.org/10.6084/m9.figshare.c.3618773 The current record is supplemented by this dataset	dataset	November 2016
Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma [Supplemental Data] Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773.v1 The current record is supplemented by this collection	collection	November 2016
Additional file 5: Figure S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d1 The current record is supplemented by this text	text	January 2016
Additional file 5: Figure S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d1.v1 The current record is supplemented by this figure	figure	November 2016
Additional file 8: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d2.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 3: Table S3. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d3 The current record is supplemented by this dataset	dataset	January 2016
Additional file 3: Table S3. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d3.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 1: Table S1. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d4.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 7: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d5 The current record is supplemented by this dataset	dataset	January 2016
Additional file 7: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d5.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 4: Table S4. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d6.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 2: Table S2. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d7 The current record is supplemented by this dataset	dataset	January 2016
Additional file 2: Table S2. of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d7.v1 The current record is supplemented by this dataset	dataset	November 2016
Additional file 6: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d8 The current record is supplemented by this dataset	dataset	January 2016
Additional file 6: of Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma Bellora, Nicolás; Moliné, Martín; David-Palma, Márcia https://doi.org/10.6084/m9.figshare.c.3618773_d8.v1 The current record is supplemented by this dataset	dataset	November 2016

Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma

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