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Title: Structural, biochemical, and biophysical characterization of idelalisib binding to phosphoinositide 3-kinase δ

Journal Article · · Journal of Biological Chemistry

Idelalisib (also known as GS-1101, CAL-101, IC489666, and Zydelig is a PI3Kδ inhibitor that has recently been approved for the treatment of several hematological malignancies. Given its use in human diseases, we needed a clear picture of how idelalisib binds to and inhibits PI3Kδ. Here, our data show that idelalisib is a potent and selective inhibitor of the kinase activity of PI3Kδ. A kinetic characterization clearly demonstrated ATP-competitive inhibition, and several additional biochemical and biophysical assays showed that the compound binds reversibly and noncovalently to the kinase. Lastly, a crystal structure of idelalisib bound to the p110δ subunit of PI3Kδ furthers our understanding of the binding interactions that confer the potency and selectivity of idelalisib.

Research Organization:
Univ. of California, Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1347695
Alternate ID(s):
OSTI ID: 1347696
Journal Information:
Journal of Biological Chemistry, Vol. 290, Issue 13; ISSN 0021-9258
Publisher:
American Society for Biochemistry and Molecular BiologyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 112 works
Citation information provided by
Web of Science

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Cited By (22)

PI3K isoform-selective inhibitors: next-generation targeted cancer therapies journal September 2015
Structural Determinants of Isoform Selectivity in PI3K Inhibitors journal February 2019
Clinical Pharmacokinetic and Pharmacodynamic Profile of Idelalisib journal August 2015
Theoretical studies on the selectivity mechanisms of PI3Kδ inhibition with marketed idelalisib and its derivatives by 3D-QSAR, molecular docking, and molecular dynamics simulation journal July 2019
The PI3Kδ-Selective Inhibitor Idelalisib Minimally Interferes with Immune Effector Function Mediated by Rituximab or Obinutuzumab and Significantly Augments B Cell Depletion In Vivo journal February 2018
Discovery of the Potent Phosphoinositide 3‐Kinase δ (PI3 K δ) Inhibitors journal January 2020
Idelalisib for the treatment of non-Hodgkin lymphoma journal January 2016
Phosphoinositide 3-kinase δ inactivation prevents vitreous-induced activation of AKT/MDM2/p53 and migration of retinal pigment epithelial cells journal August 2019
Discovery of a novel phosphoinositide 3-kinase gamma (PI3Kγ) inhibitor against hematologic malignancies and theoretical studies on its PI3Kγ-specific binding mechanisms journal January 2019
Discovery and SAR of Novel 2,3-Dihydroimidazo[1,2- c ]quinazoline PI3K Inhibitors: Identification of Copanlisib (BAY 80-6946) journal June 2016
Conformationally restricted quinazolone derivatives as PI3Kδ-selective inhibitors: the design, synthesis and biological evaluation journal January 2019
Conformational disruption of PI3Kδ regulation by immunodeficiency mutations in PIK3CD and PIK3R1 journal February 2017
Analysis of phosphoinositide 3-kinase inhibitors by bottom-up electron-transfer dissociation hydrogen/deuterium exchange mass spectrometry journal May 2017
PI3Kδ inhibitor idelalisib in combination with BTK inhibitor ONO/GS-4059 in diffuse large B cell lymphoma with acquired resistance to PI3Kδ and BTK inhibitors journal February 2017
Global kinome silencing combined with 3D invasion screening of the tumor microenvironment identifies fibroblast-expressed PIK3Cδ involvement in triple-negative breast cancer progression posted_content November 2019
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Duvelisib: A 2018 Novel FDA-Approved Small Molecule Inhibiting Phosphoinositide 3-Kinases journal May 2019
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Molecular dynamics insights for PI3K-δ inhibition & structure guided identification of novel PI3K-δ inhibitors text January 2019
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