PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
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November 2012 |
Integrative Analyses of Posttranscriptional Regulation in the Yeast Saccharomyces cerevisiae Using Transcriptomic and Proteomic Data
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March 2008 |
A dynamic model of proteome changes reveals new roles for transcript alteration in yeast
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Photosynthetic Genes of Petunia (Mitchell) Are Differentially Expressed during the Diurnal Cycle
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DAnTE: a statistical tool for quantitative analysis of -omics data
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Marine algae and land plants share conserved phytochrome signaling systems
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Global quantification of mammalian gene expression control
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InterProScan: protein domains identifier
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July 2005 |
The nucleolar RNA methyltransferase Misu (NSun2) is required for mitotic spindle stability
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Correlation between stability of a protein and its dipeptide composition: a novel approach for predicting in vivo stability of a protein from its primary sequence
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Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data
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Integrative analysis of transcriptomic and proteomic data of Desulfovibrio vulgaris: a non-linear model to predict abundance of undetected proteins
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May 2009 |
A multi-omic analysis of human naïve CD4+ T cells
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November 2015 |
TopHat: discovering splice junctions with RNA-Seq
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March 2009 |
Proteome-Wide Analysis and Diel Proteomic Profiling of the Cyanobacterium Arthrospira platensis PCC 8005
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June 2014 |
Stochastic gradient boosting
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February 2002 |
InterProScan - an integration platform for the signature-recognition methods in InterPro
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Pathway Tools version 13.0: integrated software for pathway/genome informatics and systems biology
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December 2009 |
Correlation of mRNA and protein in complex biological samples
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October 2009 |
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
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March 2003 |
Transcriptome and Proteome Dynamics of a Light-Dark Synchronized Bacterial Cell Cycle
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August 2012 |
Cell cycle regulated expression of nucleolar antigen P120 in normal and transformed human fibroblasts
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January 1993 |
Green algae and the origin of land plants
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October 2004 |
Daily Rhythms in the Cyanobacterium Synechococcus elongatus Probed by High-resolution Mass Spectrometry–based Proteomics Reveals a Small Defined Set of Cyclic Proteins
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March 2014 |
Glycerolipids in photosynthesis: Composition, synthesis and trafficking
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April 2014 |
The anatomy of microbial cell state transitions in response to oxygen
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Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
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September 2005 |
Gene Ontology: tool for the unification of biology
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Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
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March 2012 |
KEGG for integration and interpretation of large-scale molecular data sets
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November 2011 |
Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags
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A conserved AU sequence from the 3′ untranslated region of GM-CSF mRNA mediates selective mRNA degradation
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August 1986 |
Analysis of Biostimulated Microbial Communities from Two Field Experiments Reveals Temporal and Spatial Differences in Proteome Profiles
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Large-scale gene function analysis with the PANTHER classification system
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A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
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The use of DAPI for identifying and counting aquatic microflora1
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September 1980 |
Purification and Characterization of Class-I and Class-II Fructose-1,6-bisphosphate Aldolases from the Cyanobacterium Synechocystis sp. PCC 6803
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Ecological niche partitioning in the picoplanktonic green alga Micromonas pusilla : evidence from environmental surveys using phylogenetic probes
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Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans
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August 2015 |
Dynamic proteomic profiling of a unicellular cyanobacterium Cyanothece ATCC51142 across light-dark diurnal cycles
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Structure and Function of Sphingosine-1-Phosphate Lyase, a Key Enzyme of Sphingolipid Metabolism
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System wide analyses have underestimated protein abundances and the importance of transcription in mammals
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Characterizing Microbial Community and Geochemical Dynamics at Hydrothermal Vents Using Osmotically Driven Continuous Fluid Samplers
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April 2013 |
Posttranscriptional Expression Regulation: What Determines Translation Rates?
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AU-rich elements and associated factors: are there unifying principles?
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Circadian Rhythms Confer a Higher Level of Fitness to Arabidopsis Plants
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Mapping the dynamic organization of the nuclear pore complex inside single living cells
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The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications
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Correlation between Protein and mRNA Abundance in Yeast
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Sequence signatures and mRNA concentration can explain two‐thirds of protein abundance variation in a human cell line
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The nuclear pore complex protein ALADIN is anchored via NDC1 but not via POM121 and GP210 in the nuclear envelope
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Post-Transcriptional Regulation of Iron Homeostasis in Saccharomyces cerevisiae
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July 2013 |
Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas
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April 2009 |
Crystal Structure of Diaminopimelate Epimerase from Arabidopsis thaliana, an Amino Acid Racemase Critical for l-Lysine Biosynthesis
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January 2009 |
Smallest Algae Thrive As the Arctic Ocean Freshens
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October 2009 |
Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
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January 2007 |
Upstream open reading frames cause widespread reduction of protein expression and are polymorphic among humans
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April 2009 |
Protein Expression Regulation under Oxidative Stress
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Galaxy: A platform for interactive large-scale genome analysis
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Boosting Algorithms: Regularization, Prediction and Model Fitting
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Plant Circadian Rhythms
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Predicting Subcellular Localization of Proteins Based on their N-terminal Amino Acid Sequence
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July 2000 |
Role of HuD and other RNA-binding proteins in neural development and plasticity
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March 2002 |
Regularization Paths for Generalized Linear Models via Coordinate Descent
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Spectral Probabilities and Generating Functions of Tandem Mass Spectra: A Strike against Decoy Databases
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August 2008 |
Plant sphingolipids: decoding the enigma of the Sphinx: Tansley review
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December 2009 |
Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin
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AREsite: a database for the comprehensive investigation of AU-rich elements
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November 2010 |
VIPER: an advanced software package to support high-throughput LC-MS peptide identification
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June 2007 |
PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes
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June 2003 |
Insights into the regulation of protein abundance from proteomic and transcriptomic analyses
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March 2012 |
Change in flagellar beat frequency of Chlamydomonas in response to light
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January 1982 |
Integrated transcriptomic and proteomic analyses for the characterization of parathyroid oxyphil cells in uremic patients
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March 2022 |
Augmenting Product Defect Surveillance Through Web Crawling and Machine Learning in Singapore
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June 2021 |
AU-rich elements: characterization and importance in mRNA degradation
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November 1995 |
The WD repeat: a common architecture for diverse functions
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May 1999 |
Transcriptomic mapping uncovers Purkinje neuron plasticity driving learning
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May 2022 |
Mir34a constrains pancreatic carcinogenesis
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June 2020 |
New technology may reveal mechanisms of radiation resistance in
Deinococcus radiodurans
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August 2002 |
The Pathway Tools software
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July 2002 |
Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans
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April 2015 |
Translational efficiency is regulated by the length of the 3' untranslated region.
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January 1996 |
System Wide Analyses have Underestimated Protein Abundances and the Importance of Transcription in Mammals
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text
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January 2012 |