Average heterozgosity of STRPs in the Pima Indians is lower than in Caucasians
- NIH, Phoenix, AZ (United States); and others
The Pima Indians of Arizona have the highest reported prevalence of non-insulin dependent diabetes (NIDDM) in the world. To localize regions of the genome which may contain genes important in the predisposition to NIDDM, we are producing a high density genetic map in this population. In contrast to previous studies in the Pima which have examined polymorphisms in single genes or small genetic regions, we are using short tandem repeated polymorphisms (STRPs) as genetic markers covering the entire genome. We have genotyped over 150 STRPs in a sample consisting of approximately 1000 individuals comprising 250 nuclear families. Many of these STRPs were originally typed in a sample of Caucasians (CEPH) thus allowing direct comparisons between populations. Our analyses indicate that the average heterozygosity of the STRPs is 11% lower in the Pima (P<0.001). A survey of 8 different blood group markers in the Pima showed a 17% difference in average heterozygosity when compared with North American Caucasians (P<0.001). In contrast, a sample of 11 restriction fragment length polymorphisms (RFLPs) does not show a similar difference in average heterozygosity. The average heterozygosity is 3% higher in the Pima as compared to Caucasians for these 11 RFLPs (P<0.001). There is a significant correlation between estimates of heterozygosity based on the sample of STRP markers in Pima and Caucasians (R=0.48 P<0.001), but less than 25% of the variance is explained by this relationship, presumably reflecting different evolutionary histories for each group since divergence of these two populations. In addition to differences in allele frequencies between the two populations, we have tentatively identified a number of markers which differ from Caucasians in the allele sizes. The decrease in average heterozygosity observed with STRP markers supports the view that the Pima Indians represent a more genetically homogenous population than Caucasians.
- OSTI ID:
- 133948
- Report Number(s):
- CONF-941009--
- Journal Information:
- American Journal of Human Genetics, Journal Name: American Journal of Human Genetics Journal Issue: Suppl.3 Vol. 55; ISSN AJHGAG; ISSN 0002-9297
- Country of Publication:
- United States
- Language:
- English
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