Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome

Ross, Daniel E.; Gulliver, Djuna

doi:10.1128/genomeA.01024-16

Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome

Journal Article · Thu Oct 06 00:00:00 UTC 2016 · Genome Announcements

DOI:https://doi.org/10.1128/genomeA.01024-16· OSTI ID:1337544

^[1]; Gulliver, Djuna ^[2]

National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)
AECOM Technology Corporation, Pittsburgh, PA (United States)

The draft genome sequence ofPseudomonas stutzeristrain K35 was separated from a metagenome derived from a produced water microbial community of a coalbed methane well. The genome encodes a complete nitrogen fixation pathway and the upper and lower naphthalene degradation pathways.

Research Organization:: National Energy Technology Lab. (NETL), Pittsburgh, PA, (United States)

Sponsoring Organization:: USDOE

OSTI ID:: 1337544

Report Number(s):: NETL-PUB--20630

Journal Information:: Genome Announcements, Journal Name: Genome Announcements Journal Issue: 5 Vol. 4; ISSN 2169-8287

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (8)

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes Brettin, Thomas; Davis, James J.; Disz, Terry Scientific Reports, Vol. 5, Issue 1 https://doi.org/10.1038/srep08365	journal	February 2015
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry Journal of Computational Biology, Vol. 19, Issue 5 https://doi.org/10.1089/cmb.2012.0021	journal	May 2012
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes Parks, Donovan H.; Imelfort, Michael; Skennerton, Connor T. Genome Research, Vol. 25, Issue 7 https://doi.org/10.1101/gr.186072.114	journal	May 2015
Complete Genome Sequence of the Naphthalene-Degrading Bacterium Pseudomonas stutzeri AN10 (CCUG 29243) Brunet-Galmés, Isabel; Busquets, Antonio; Peña, Arantxa Journal of Bacteriology, Vol. 194, Issue 23 https://doi.org/10.1128/JB.01753-12	journal	November 2012
The RAST Server: Rapid Annotations using Subsystems Technology Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A. BMC Genomics, Vol. 9, Issue 1, Article No. 75 https://doi.org/10.1186/1471-2164-9-75	journal	January 2008
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes Galardini, Marco; Biondi, Emanuele G.; Bazzicalupo, Marco Source Code for Biology and Medicine, Vol. 6, Issue 1 https://doi.org/10.1186/1751-0473-6-11	journal	January 2011
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data Laczny, Cedric C.; Sternal, Tomasz; Plugaru, Valentin Microbiome, Vol. 3, Issue 1 https://doi.org/10.1186/s40168-014-0066-1	journal	January 2015
PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data Ruby, J. Graham; Bellare, Priya; DeRisi, Joseph L. G3: Genes\|Genomes\|Genetics, Vol. 3, Issue 5 https://doi.org/10.1534/g3.113.005967	journal	March 2013

Cited By (2)

New approaches for metagenome assembly with short reads Ayling, Martin; Clark, Matthew D.; Leggett, Richard M. Briefings in Bioinformatics, Vol. 21, Issue 2 https://doi.org/10.1093/bib/bbz020	journal	February 2019
Bioconversion of coal to methane by microbial communities from soil and from an opencast mine in the Xilingol grassland of northeast China Wang, Bobo; Wang, Yanfen; Cui, Xiaoyong Biotechnology for Biofuels, Vol. 12, Issue 1 https://doi.org/10.1186/s13068-019-1572-y	journal	October 2019

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Coalbed Methane
Draft Genome
microbiology

Reconstruction of a Nearly Complete Pseudomonas Draft Genome Sequence from a Coalbed Methane-Produced Water Metagenome

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