SynTrack: DNA Assembly Workflow Management (SynTrack) v2.0.1

Software · Thu Dec 01 05:00:00 EST 2016

OSTI ID:1335644

MENG, XIANWEI; SIMIRENKO, LISA

SynTrack is a dynamic, workflow-driven data management system that tracks the DNA build process: Management of the hierarchical relationships of the DNA fragments; Monitoring of process tasks for the assembly of multiple DNA fragments into final constructs; Creations of vendor order forms with selectable building blocks. Organizing plate layouts barcodes for vendor/pcr/fusion/chewback/bioassay/glycerol/master plate maps (default/condensed); Creating or updating Pre-Assembly/Assembly process workflows with selected building blocks; Generating Echo pooling instructions based on plate maps; Tracking of building block orders, received and final assembled for delivering; Bulk updating of colony or PCR amplification information, fusion PCR and chewback results; Updating with QA/QC outcome with .csv & .xlsx template files; Re-work assembly workflow enabled before and after sequencing validation; and Tracking of plate/well data changes and status updates and reporting of master plate status with QC outcomes.

• Short Name / Acronym: SynTrack; 005076MLTPL00
• Site Accession Number: 2017-023
• Version: 00
• Programming Language(s): Medium: X; OS: MULTI PLATFORM
• Research Organization: Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
• Sponsoring Organization: USDOE
• Contributing Organization: LAWRENCE BERKELEY NATIONAL LABORATORY
• DOE Contract Number: AC02-05CH11231
• OSTI ID: 1335644
• Country of Origin: United States