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Title: Nanometer-Scale Chemistry of a Calcite Biomineralization Template: Implications for Skeletal Composition and Nucleation

Journal Article · · Proceedings of the National Academy of Sciences of the United States of America
ORCiD logo [1];  [2];  [3];  [1];  [3];  [3];  [4];  [1];  [5];  [2]
  1. Department of Earth and Planetary Sciences, University of California, Davis, CA 95616,
  2. School of Oceanography, University of Washington, Seattle, WA 98195,
  3. Environmental Molecular Science Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352,
  4. Department of Earth and Environmental Sciences, Lamont-Doherty Earth Observatory of Columbia University, Palisades, NY 10964,
  5. Department of Earth and Planetary Sciences, University of California, Davis, CA 95616,, College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, Corvallis, OR 97331

Biomineralizing organisms exhibit exquisite control over skeletal morphology and composition. The promise of understanding and harnessing this feat of natural engineering has motivated an intense search for the mechanisms that direct in vivo mineral self-assembly. We used atom probe tomography, a sub-nanometer 3D chemical mapping technique, to examine the chemistry of a buried organic-mineral interface in biomineral calcite from a marine foraminifer. Here, the chemical patterns at this interface capture the processes of early biomineralization, when the shape, mineralogy, and orientation of skeletal growth are initially established. Sodium is enriched by a factor of nine on the organic side of the interface. Based on this pattern, we suggest that sodium plays an integral role in early biomineralization, potentially altering interfacial energy to promote crystal nucleation, and that interactions between organic surfaces and electrolytes other than calcium or carbonate could be a crucial aspect of CaCO3 biomineralization.

Research Organization:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
Grant/Contract Number:
48564; AC05-76RL01830
OSTI ID:
1330468
Alternate ID(s):
OSTI ID: 1339818
Report Number(s):
PNNL-SA-112579
Journal Information:
Proceedings of the National Academy of Sciences of the United States of America, Journal Name: Proceedings of the National Academy of Sciences of the United States of America Vol. 113 Journal Issue: 46; ISSN 0027-8424
Publisher:
Proceedings of the National Academy of SciencesCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 61 works
Citation information provided by
Web of Science

References (48)

Control of Aragonite or Calcite Polymorphism by Mollusk Shell Macromolecules journal January 1996
Carboxylated molecules regulate magnesium content of amorphous calcium carbonates during calcification journal December 2009
The coordination of Mg in foraminiferal calcite journal December 2013
The Organic-Mineral Interface in Biominerals journal January 2005
The Source of Ions for Biomineralization in Foraminifera and Their Implications for Paleoceanographic Proxies journal January 2003
Cation specific binding with protein surface charges journal July 2009
Biomineralization in perforate foraminifera journal August 2014
A novel salinity proxy based on Na incorporation into foraminiferal calcite journal January 2013
Proteins and DNA from modern planktonic foraminifera journal January 1994
Interactions between acidic proteins and crystals: stereochemical requirements in biomineralization. journal June 1985
Seawater transport during coral biomineralization journal May 2012
Experimental determination of barium uptake in shells of the planktonic foraminifera Orbulina universa at 22°C journal July 1992
Modulation and daily banding of Mg/Ca in tests by symbiont photosynthesis and respiration: a complication for seawater thermometry? journal September 2004
Traditional and Emerging Geochemical Proxies in Foraminifera journal March 2010
Crystallization at Inorganic-organic Interfaces: Biominerals and Biomimetic Synthesis journal September 1993
Understanding Atom Probe Tomography of Oxide-Supported Metal Nanoparticles by Correlation with Atomic-Resolution Electron Microscopy and Field Evaporation Simulation journal March 2014
Calcium carbonate nucleation driven by ion binding in a biomimetic matrix revealed by in situ electron microscopy journal January 2015
Controls on magnesium and strontium uptake in planktonic foraminifera determined by live culturing journal August 1999
The thermodynamics of calcite nucleation at organic interfaces: Classical vs. non-classical pathways journal January 2012
Oriented nucleation of CaCo3 from metastable solutions under Langmuir monolayers journal January 1991
Biomineralization and Evolutionary History journal January 2003
Polysaccharide chemistry regulates kinetics of calcite nucleation through competition of interfacial energies journal May 2013
New insights into mechanisms of biomolecular control on growth of inorganic crystals journal January 2007
Ultrastructural examination of chamber morphogenesis and biomineralization in the planktonic foraminiferOrbulina universa journal January 1988
Proteomic analysis of skeletal organic matrix from the stony coral Stylophora pistillata journal February 2013
CLIMATE CHANGE: Carbonate Mysteries journal May 2002
Hadean age for a post-magma-ocean zircon confirmed by atom-probe tomography journal February 2014
Layered Growth and Crystallization in Calcareous Biominerals: Impact of Structural and Chemical Evidence on Two Major Concepts in Invertebrate Biomineralization Studies journal February 2012
Atom probe tomography (APT) of carbonate minerals journal January 2016
Hofmeister Phenomena: An Update on Ion Specificity in Biology journal January 2012
Impact of biomineralization processes on the Mg content of foraminiferal shells: A biological perspective: IMPACT OF BIOMINERALIZATION PROCESSES journal January 2006
Experimental determination of carbonate-associated sulfate δ 34 S in planktonic foraminifera shells journal April 2014
Timing and mechanism for intratest Mg/Ca variability in a living planktic foraminifer journal January 2015
Mg/Ca variation in planktonic foraminifera tests: implications for reconstructing palaeo-seawater temperature and habitat migration journal July 2003
Formation of chiral morphologies through selective binding of amino acids to calcite surface steps journal June 2001
Introduction to Atom-Probe Tomography book January 2014
Proteins from the organic matrix of core-top and fossil planktonic foraminifera journal August 1990
Ions from the Hofmeister series and osmolytes: effects on proteins in solution and in the crystallization process journal November 2004
The Initial Stages of Template-Controlled CaCO3 Formation Revealed by Cryo-TEM journal March 2009
Properties of Water Solutions of Electrolytes and Nonelectrolytes journal August 2001
Review of Atom Probe FIB-Based Specimen Preparation Methods journal November 2007
The evolution of early Foraminifera journal September 2003
Nanoscale chemical tomography of buried organic–inorganic interfaces in the chiton tooth journal January 2011
Design of a femtosecond laser assisted tomographic atom probe journal April 2006
Dynamic contact angles on PTFE surface by aqueous surfactant solution in the absence and presence of electrolytes journal September 2009
Atom Probe Tomographic Mapping Directly Reveals the Atomic Distribution of Phosphorus in Resin Embedded Ferritin journal February 2016
Mollusk Shell Acidic Proteins: In Search of Individual Functions journal June 2003
The coordination and distribution of B in foraminiferal calcite journal April 2015