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Title: Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

Journal Article · · Genome Announcements
 [1];  [1];  [1];  [2];  [3];  [4];  [5];  [6];  [3]
  1. Oregon State Univ., Corvallis, OR (United States)
  2. Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  3. Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)
  4. Monterey Bay Aquarium Research Institute, Moss Landing, CA (United States)
  5. Univ. of Tennessee, Knoxville, TN (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
  6. Univ. of Tennessee, Knoxville, TN (United States)
+ Show Author Affiliations

Heterotrophic microbes are critical components of aquatic food webs. Linkages between populations and the substrates they utilize are not well defined. We present the metagenome of microbial communities from the coastal Pacific Ocean exposed to various nutrient additions in order to better understand substrate utilization and partitioning in this environment.

Research Organization:
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States); Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States)
Sponsoring Organization:
USDOE; USDOE Office of Management, Budget, and Evaluation (ME)
Grant/Contract Number:
AC52-07NA27344; AC05-00OR22725
OSTI ID:
1241995
Alternate ID(s):
OSTI ID: 1265655
Report Number(s):
LLNL-JRNL-668499
Journal Information:
Genome Announcements, Vol. 3, Issue 2; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (10)

Comparative organic geochemistries of soils and marine sediments journal December 1997
Proteorhodopsin phototrophy in the ocean journal June 2001
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth journal April 2012
Abundant and diverse bacteria involved in DMSP degradation in marine surface waters journal September 2008
Ray Meta: scalable de novo metagenome assembly and profiling journal January 2012
The MaSuRCA genome assembler journal August 2013
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Genome sequencing in microfabricated high-density picolitre reactors journal July 2005
GAM-NGS: genomic assemblies merger for next generation sequencing journal April 2013
Microbial Ecology of the Oceans book June 2008

Cited By (3)

Microbial Diversity and Putative Opportunistic Pathogens in Dishwasher Biofilm Communities journal January 2018
Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton journal April 2016
Phylogenetically conserved resource partitioning in the coastal microbial loop journal August 2017

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Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES