Genome-scale resources for Thermoanaerobacterium saccharolyticum

Currie, Devin H.; Raman, Babu; Gowen, Christopher M.; Tschaplinski, Timothy J.; Land, Miriam L.; Brown, Steven D.; Covalla, Sean; Klingeman, Dawn Marie; Yang, Zamin Koo; Engle, Nancy L.; Johnson, Courtney M.; Rodriguez, Miguel A.; Shaw, A. Joe; Kenealy, William R.; Lynd, Lee R.; Fong, Stephen S.; Mielenz, Jonathan R.; Davison, Brian H.; Hogsett, David A.; Herring, Christopher D.

doi:10.1186/s12918-015-0159-x

Genome-scale resources for Thermoanaerobacterium saccharolyticum

Journal Article · Fri Jun 26 00:00:00 EDT 2015 · BMC Systems Biology

DOI:https://doi.org/10.1186/s12918-015-0159-x· OSTI ID:1265410

Currie, Devin H. ^[1]; Raman, Babu ^[2]; Gowen, Christopher M. ^[3]; Tschaplinski, Timothy J. ^[4]; Land, Miriam L. ^[4]; Brown, Steven D. ^[4]; Covalla, Sean ^[1]; Klingeman, Dawn Marie ^[4]; Yang, Zamin Koo ^[4]; Engle, Nancy L. ^[4]; Johnson, Courtney M. ^[4]; Rodriguez, Miguel A. ^[4]; Shaw, A. Joe ^[5]; Kenealy, William R. ^[1]; Lynd, Lee R. ^[6]; Fong, Stephen S. ^[7]; Mielenz, Jonathan R. ^[4]; Davison, Brian H. ^[4]; Hogsett, David A. ^[1]; Herring, Christopher D. ^[8]

Mascoma Corporation, Lebanon, NH (United States)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Dow AgroSciences, Indianapolis, IN (United States)
Virginia Commonwealth Univ., Richmond, VA (United States); Univ. of Toronto, ON (Canada)
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Mascoma Corporation, Lebanon, NH (United States); Novogy Inc, Cambridge, MA (United States)
Mascoma Corporation, Lebanon, NH (United States) ; Dartmouth College, Hanover, NH (United States)
Virginia Commonwealth Univ., Richmond, VA (United States)
Mascoma Corporation, Lebanon, NH (United States); Dartmouth College, Hanover, NH (United States)

Thermoanaerobacterium saccharolyticum is a hemicellulose-degrading thermophilic anaerobe that was previously engineered to produce ethanol at high yield. For this research, a major project was undertaken to develop this organism into an industrial biocatalyst, but the lack of genome information and resources were recognized early on as a key limitation.

View Accepted Manuscript (DOE)

Research Organization:: Oak Ridge National Laboratory (ORNL), Oak Ridge, TN (United States). BioEnergy Science Center (BESC)

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC05-00OR22725

OSTI ID:: 1265410

Journal Information:: BMC Systems Biology, Journal Name: BMC Systems Biology Journal Issue: 1 Vol. 9; ISSN 1752-0509

Publisher:: BioMed CentralCopyright Statement

Country of Publication:: United States

Language:: English

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Profile of Secreted Hydrolases, Associated Proteins, and SlpA in Thermoanaerobacterium saccharolyticum during the Degradation of Hemicellulose Currie, D. H.; Guss, A. M.; Herring, C. D. Applied and Environmental Microbiology, Vol. 80, Issue 16 https://doi.org/10.1128/AEM.00998-14	journal	June 2014
Marker Removal System for Thermoanaerobacterium saccharolyticum and Development of a Markerless Ethanologen Shaw, A. Joe; Covalla, Sean; Hogsett, David Applied and Environmental Microbiology, Vol. 77, Issue 7, p. 2534-2536 https://doi.org/10.1128/AEM.01731-10	journal	February 2011
Characterization of Xylan Utilization and Discovery of a New Endoxylanase in Thermoanaerobacterium saccharolyticum through Targeted Gene Deletions Podkaminer, Kara K.; Guss, Adam M.; Trajano, Heather L. Applied and Environmental Microbiology, Vol. 78, Issue 23 https://doi.org/10.1128/AEM.02130-12	journal	September 2012
Fermentation of mucin and plant polysaccharides by strains of Bacteroides from the human colon. Salyers, A. A.; Vercellotti, J. R.; West, S. E. Applied and Environmental Microbiology, Vol. 33, Issue 2 https://doi.org/10.1128/AEM.33.2.319-322.1977	journal	January 1977
Regulation and Characterization of Xylanolytic Enzymes of Thermoanaerobacterium saccharolyticum B6A-RI Lee, Yong-Eok; Lowe, Sue E.; Zeikus, J. Gregory Applied and Environmental Microbiology, Vol. 59, Issue 3 https://doi.org/10.1128/AEM.59.3.763-771.1993	journal	January 1993
Gene cloning, sequencing, and biochemical characterization of endoxylanase from Thermoanaerobacterium saccharolyticum B6A-RI. Lee, Y. E.; Lowe, S. E.; Zeikus, J. G. Applied and Environmental Microbiology, Vol. 59, Issue 9 https://doi.org/10.1128/AEM.59.9.3134-3137.1993	journal	January 1993
Cloning and sequencing of the Thermoanaerobacterium saccharolyticum B6A-RI apu gene and purification and characterization of the amylopullulanase from Escherichia coli. Ramesh, M. V.; Podkovyrov, S. M.; Lowe, S. E. Applied and Environmental Microbiology, Vol. 60, Issue 1 https://doi.org/10.1128/AEM.60.1.94-101.1994	journal	January 1994
Advances in Development of a Genetic System for Thermoanaerobacterium spp.: Expression of Genes Encoding Hydrolytic Enzymes, Development of a Second Shuttle Vector, and Integration of Genes into the Chromosome Mai, V.; Wiegel, J. Applied and Environmental Microbiology, Vol. 66, Issue 11 https://doi.org/10.1128/AEM.66.11.4817-4821.2000	journal	November 2000
Identification of the [FeFe]-Hydrogenase Responsible for Hydrogen Generation in Thermoanaerobacterium saccharolyticum and Demonstration of Increased Ethanol Yield via Hydrogenase Knockout Shaw, A. Joe; Hogsett, David; Lynd, Lee Journal of Bacteriology, Vol. 191, Issue 20, p. 6457-6464 https://doi.org/10.1128/JB.00497-09	journal	July 2009
NADP+ Reduction with Reduced Ferredoxin and NADP+ Reduction with NADH Are Coupled via an Electron-Bifurcating Enzyme Complex in Clostridium kluyveri Wang, S.; Huang, H.; Moll, J. Journal of Bacteriology, Vol. 192, Issue 19 https://doi.org/10.1128/JB.00612-10	journal	July 2010
Salt Stress in Desulfovibrio vulgaris Hildenborough: an Integrated Genomics Approach Mukhopadhyay, A.; He, Z.; Alm, E. J. Journal of Bacteriology, Vol. 188, Issue 11 https://doi.org/10.1128/JB.01921-05	journal	May 2006
Global Analysis of Heat Shock Response in Desulfovibrio vulgaris Hildenborough Chhabra, S. R.; He, Q.; Huang, K. H. Journal of Bacteriology, Vol. 188, Issue 5 https://doi.org/10.1128/JB.188.5.1817-1828.2006	journal	February 2006
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