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MamO Is a Repurposed Serine Protease that Promotes Magnetite Biomineralization through Direct Transition Metal Binding in Magnetotactic Bacteria

Journal Article · · PLoS Biology (Online)
 [1];  [2];  [3];  [4];  [4];  [5];  [6];  [7];  [8]
  1. Univ. of California, Berkeley, CA (United States). Dept. of Plant and Microbial Biology; Office of Scientific and Technical Information (OSTI)
  2. Univ. of California, Berkeley, CA (United States). Dept. of Molecular and Cellular Biology; Univ. of California, Berkeley, CA (United States). California Institute for Quantitative Biosciences
  3. Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Physical Biosciences Division
  4. Univ. of California, Berkeley, CA (United States). Dept. of Plant and Microbial Biology
  5. Univ. of California, Berkeley, CA (United States). Dept. of Chemistry
  6. Univ. of California, Berkeley, CA (United States). Dept. of Molecular and Cellular Biology; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Physical Biosciences Division; Univ. of California, Berkeley, CA (United States). Dept. of Chemistry
  7. Univ. of California, Berkeley, CA (United States). Dept. of Molecular and Cellular Biology; Univ. of California, Berkeley, CA (United States). California Institute for Quantitative Biosciences; Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Life Sciences Division
  8. Univ. of California, Berkeley, CA (United States). Dept. of Plant and Microbial Biology; Univ. of California, Berkeley, CA (United States). Dept. of Molecular and Cellular Biology; Univ. of California, Berkeley, CA (United States). California Institute for Quantitative Biosciences
Many living organisms transform inorganic atoms into highly ordered crystalline materials. An elegant example of such biomineralization processes is the production of nano-scale magnetic crystals in magnetotactic bacteria. Previous studies have implicated the involvement of two putative serine proteases, MamE and MamO, during the early stages of magnetite formation in Magnetospirillum magneticum AMB-1. Here, using genetic analysis and X-ray crystallography, we show that MamO has a degenerate active site, rendering it incapable of protease activity. Instead, MamO promotes magnetosome formation through two genetically distinct, noncatalytic activities: activation of MamE-dependent proteolysis of biomineralization factors and direct binding to transition metal ions. By solving the structure of the protease domain bound to a metal ion, we identify a surface-exposed di-histidine motif in MamO that contributes to metal binding and show that it is required to initiate biomineralization in vivo. Finally, we find that pseudoproteases are widespread in magnetotactic bacteria and that they have evolved independently in three separate taxa. In conclusion, our results highlight the versatility of protein scaffolds in accommodating new biochemical activities and provide unprecedented insight into the earliest stages of biomineralization.
Research Organization:
Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States); Univ. of California, Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
Grant/Contract Number:
AC02-05CH11231
OSTI ID:
1253997
Alternate ID(s):
OSTI ID: 1379123
OSTI ID: 1379160
Journal Information:
PLoS Biology (Online), Journal Name: PLoS Biology (Online) Journal Issue: 3 Vol. 14; ISSN 1545-7885
Publisher:
Public Library of ScienceCopyright Statement
Country of Publication:
United States
Language:
English

References (68)

(R)-Cysteate-nitrogen assimilation by Cupriavidus necator H16 with excretion of 3-sulfolactate: a patchwork pathway journal July 2012
Natural and synthetic inhibitors of kallikrein-related peptidases (KLKs) journal November 2010
Controlled formation of magnetite crystal by partial oxidation of ferrous hydroxide in the presence of recombinant magnetotactic bacterial protein Mms6 journal December 2007
Diversity of Magneto-Aerotactic Behaviors and Oxygen Sensing Mechanisms in Cultured Magnetotactic Bacteria journal July 2014
Covalent Linkage of Distinct Substrate Degrons Controls Assembly and Disassembly of DegP Proteolytic Cages journal April 2011
Catalytic Metal Ion Rearrangements Underline Promiscuity and Evolvability of a Metalloenzyme journal March 2013
What Makes a Protein Fold Amenable to Functional Innovation? Fold Polarity and Stability Trade-offs journal July 2013
Biomineralization: A structural perspective journal September 2008
mamO and mamE genes are essential for magnetosome crystal biomineralization in Magnetospirillum gryphiswaldense MSR-1 journal October 2010
The robustness and innovability of protein folds journal June 2014
Accurate High-Throughput Structure Mapping and Prediction with Transition Metal Ion FRET journal January 2013
Crystal Structure of a Prostate Kallikrein Isolated from Stallion Seminal Plasma: A Homologue of Human PSA journal September 2002
Crystal structure of DegP (HtrA) reveals a new protease-chaperone machine journal March 2002
Mapping the structure and conformational movements of proteins with transition metal ion FRET journal June 2009
HTRA proteases: regulated proteolysis in protein quality control journal February 2011
Evident and latent plasticity across the rice diterpene synthase family with potential implications for the evolution of diterpenoid metabolism in the cereals journal April 2011
Magnetosome vesicles are present before magnetite formation, and MamA is required for their activation journal March 2004
The Legionella HtrA homologue DegQ is a self-compartmentizing protease that forms large 12-meric assemblies journal June 2011
Genetic and biochemical investigations of the role of MamP in redox control of iron biomineralization in Magnetospirillum magneticum journal March 2015
Evolutionary Divergence of Substrate Specificity within the Chymotrypsin-like Serine Protease Fold journal November 1997
A Novel Protein Tightly Bound to Bacterial Magnetic Particles in Magnetospirillum magneticum Strain AMB-1 journal December 2002
Energetic and Structural Consequences of Perturbing Gly-193 in the Oxyanion Hole of Serine Proteases journal May 2005
Profile hidden Markov models journal October 1998
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences journal May 2006
PhyloBayes 3: a Bayesian software package for phylogenetic reconstruction and molecular dating journal June 2009
MUSCLE: multiple sequence alignment with high accuracy and high throughput journal March 2004
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis journal April 2000
The DUF81 protein TauE in Cupriavidus necator H16, a sulfite exporter in the metabolism of C2 sulfonates journal September 2007
Features and development of Coot journal March 2010
Comparative genomic analysis of magnetotactic bacteria from the Deltaproteobacteria provides new insights into magnetite and greigite magnetosome genes required for magnetotaxis : New insights in genes required for magnetotaxis journal April 2013
Magnetosomes Are Cell Membrane Invaginations Organized by the Actin-Like Protein MamK journal January 2006
Complete Genome Sequence of the Chemolithoautotrophic Marine Magnetotactic Coccus Strain MC-1 journal May 2009
Characterization of a Spontaneous Nonmagnetic Mutant of Magnetospirillum gryphiswaldense Reveals a Large Deletion Comprising a Putative Magnetosome Island journal September 2003
Ecology, Diversity, and Evolution of Magnetotactic Bacteria journal September 2013
Functional Analysis of the Magnetosome Island in Magnetospirillum gryphiswaldense: The mamAB Operon Is Sufficient for Magnetite Biomineralization journal October 2011
PHENIX: a comprehensive Python-based system for macromolecular structure solution. text January 2010
Hereditary hemorrhagic telangiectasia: genetics and molecular diagnostics in a new era journal January 2015
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies text January 2014
Structure validation by Cα geometry: ϕ,ψ and Cβ deviation journal January 2003
Crystal Structure of a Prostate Kallikrein Isolated from Stallion Seminal Plasma: A Homologue of Human PSA journal September 2002
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
Dynamic analysis of a genomic island in Magnetospirillum sp. strain AMB-1 reveals how magnetosome synthesis developed journal January 2006
PARP1 exhibits enhanced association and catalytic efficiency with γH2A.X-nucleosome journal December 2019
Cavin1 intrinsically disordered domains are essential for fuzzy electrostatic interactions and caveola formation journal February 2021
Evident and latent plasticity across the rice diterpene synthase family with potential implications for the evolution of diterpenoid metabolism in the cereals journal April 2011
Comprehensive genetic dissection of the magnetosome gene island reveals the step-wise assembly of a prokaryotic organelle journal March 2010
Allostery Is an Intrinsic Property of the Protease Domain of DegS: IMPLICATIONS FOR ENZYME FUNCTION AND EVOLUTION journal August 2010
A Novel Protein Tightly Bound to Bacterial Magnetic Particles in Magnetospirillum magneticum Strain AMB-1 journal December 2002
Energetic and Structural Consequences of Perturbing Gly-193 in the Oxyanion Hole of Serine Proteases journal May 2005
ProtTest: selection of best-fit models of protein evolution journal January 2005
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies journal January 2014
Phylogenomic Evidence for the Presence of a Flagellum and cbb3 Oxidase in the Free-Living Mitochondrial Ancestor journal June 2011
PHENIX: a comprehensive Python-based system for macromolecular structure solution journal January 2010
Features and development of Coot journal March 2010
Monophyletic origin of magnetotaxis and the first magnetosomes: Monophyletic origin of magnetotaxis journal February 2013
The HtrA/DegP family protease MamE is a bifunctional protein with roles in magnetosome protein localization and magnetite biomineralization: Role of the MamE protease in bacterial organelle formation journal March 2011
The magnetosome membrane protein, MmsF, is a major regulator of magnetite biomineralization in Magnetospirillum magneticum AMB-1: MmsF is a regulator of magnetite biomineralization journal July 2012
Molecular mechanisms of compartmentalization and biomineralization in magnetotactic bacteria journal January 2012
Co-ordinated functions of Mms proteins define the surface structure of cubo-octahedral magnetite crystals in magnetotactic bacteria: Mms proteins define surface structure of magnetite journal July 2014
Magnetotactic bacteria journal October 1975
Complete Genome Sequence of the Chemolithoautotrophic Marine Magnetotactic Coccus Strain MC-1 journal May 2009
Biochemical and Proteomic Analysis of the Magnetosome Membrane in Magnetospirillum gryphiswaldense journal February 2004
Genetic Dissection of the mamAB and mms6 Operons Reveals a Gene Set Essential for Magnetosome Biogenesis in Magnetospirillum gryphiswaldense journal May 2014
Characterization of a Spontaneous Nonmagnetic Mutant of Magnetospirillum gryphiswaldense Reveals a Large Deletion Comprising a Putative Magnetosome Island journal September 2003
Ecology, Diversity, and Evolution of Magnetotactic Bacteria journal September 2013
Magnetotactic Bacteria journal October 1982
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments journal March 2010
Gene duplication and the evolution of moonlighting proteins journal July 2015

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On Biomineralization: Enzymes Switch on Mesocrystal Assembly journal February 2019
Targeting trimeric transmembrane domain 5 of oncogenic latent membrane protein 1 using a computationally designed peptide journal January 2019
Living Life on a Magnet journal August 2016
Magnetic genes: Studying the genetics of biomineralization in magnetotactic bacteria journal February 2020
Expression of calcification‐related ion transporters during blue mussel larval development journal May 2019
Molecular Mechanism of Magnetic Crystal Formation in Magnetotactic Bacteria book January 2018
Magnetosome biogenesis in magnetotactic bacteria journal September 2016
Biofactories: engineered nanoparticles via genetically engineered organisms journal January 2019
Engineering nanoparticle synthesis using microbial factories journal June 2017
Genomic study of a novel magnetotactic Alphaproteobacteria uncovers the multiple ancestry of magnetotaxis journal October 2018
Diversity and ecology of and biomineralization by magnetotactic bacteria: Diversity of magnetotactic bacteria journal June 2017
Magnetosome Gene Duplication as an Important Driver in the Evolution of Magnetotaxis in the Alphaproteobacteria journal October 2019
Genetic and Ultrastructural Analysis Reveals the Key Players and Initial Steps of Bacterial Magnetosome Membrane Biogenesis journal June 2016
The requirement for co-germinants during Clostridium difficile spore germination is influenced by mutations in yabG and cspA journal April 2019
Chitin Facilitated Mineralization in the Eastern Oyster journal October 2018

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