Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

Stegen, James C.; Fredrickson, James K.; Wilkins, Michael J.; Konopka, Allan E.; Nelson, William C.; Arntzen, Evan V.; Chrisler, William B.; Chu, Rosalie K.; Danczak, Robert E.; Fansler, Sarah J.; Kennedy, David W.; Resch, Charles T.; Tfaily, Malak

doi:10.1038/ncomms11237

Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover

Journal Article · Thu Apr 07 00:00:00 EDT 2016 · Nature Communications

DOI:https://doi.org/10.1038/ncomms11237· OSTI ID:1253864

Stegen, James C. ^[1]; Fredrickson, James K. ^[1]; Wilkins, Michael J. ^[2]; Konopka, Allan E. ^[1]; Nelson, William C. ^[1]; Arntzen, Evan V. ^[1]; Chrisler, William B. ^[1]; Chu, Rosalie K. ^[1]; Danczak, Robert E. ^[2]; Fansler, Sarah J. ^[1]; Kennedy, David W. ^[1]; Resch, Charles T. ^[1]; Tfaily, Malak ^[1]

Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
The Ohio State Univ., Columbus, OH (United States)

Environmental transition zones are associated with geochemical gradients that overcome energy limitations to microbial metabolism, resulting in biogeochemical hot spots and moments. Riverine systems where groundwater mixes with surface water (the hyporheic zone) are spatially complex and temporally dynamic, making development of predictive models challenging. Spatial and temporal variations in hyporheic zone microbial communities are a key, but understudied, component of riverine biogeochemical function. To investigate the coupling among groundwater-surface water mixing, microbial communities, and biogeochemistry we applied ecological theory, aqueous biogeochemistry, DNA sequencing, and ultra-high resolution organic carbon profiling to field samples collected across times and locations representing a broad range of mixing conditions. Mixing of groundwater and surface water resulted in a shift from transport-driven stochastic dynamics to a deterministic microbial structure associated with elevated biogeochemical rates. While the dynamics of the hyporheic make predictive modeling a challenge, we provide new knowledge that can improve the tractability of such models.

View Accepted Manuscript (DOE)

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 1253864

Report Number(s):: PNNL-SA--111962; ncomms11237

Journal Information:: Nature Communications, Journal Name: Nature Communications Vol. 7; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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The importance and challenge of hyporheic mixing: HYPORHEIC MIXING Hester, Erich T.; Cardenas, M. Bayani; Haggerty, Roy Water Resources Research, Vol. 53, Issue 5 https://doi.org/10.1002/2016wr020005	journal	May 2017
Effect of particle size and heterogeneity on sediment biofilm metabolism and nutrient uptake scaled using two approaches Parker, Samuel P.; Bowden, William B.; Flinn, Michael B. Ecosphere, Vol. 9, Issue 3 https://doi.org/10.1002/ecs2.2137	journal	March 2018
Hydrological pulses and burning of dissolved organic carbon by stream respiration: Hydrological pulses and stream respiration Demars, Benoît O. L. Limnology and Oceanography, Vol. 64, Issue 1 https://doi.org/10.1002/lno.11048	journal	October 2018
Dynamic changes in dissolved organic matter composition in a Mountain Lake under ice cover and relationships to changes in nutrient cycling and phytoplankton community composition Rue, Garrett P.; Darling, Joshua P.; Graham, Emily Aquatic Sciences, Vol. 82, Issue 1 https://doi.org/10.1007/s00027-019-0687-3	journal	December 2019
Seasonal Mixing-Driven System in Estuarine–Coastal Zone Triggers an Ecological Shift in Bacterial Assemblages Involved in Phytoplankton-Derived DMSP Degradation Han, Dukki; Kang, Hee Yoon; Kang, Chang-Keun Microbial Ecology, Vol. 79, Issue 1 https://doi.org/10.1007/s00248-019-01392-w	journal	May 2019
Niche and Neutrality Work Differently in Microbial Communities in Fluidic and Non-fluidic Ecosystems Wang, Lixiao; Han, Maozhen; Li, Xi Microbial Ecology, Vol. 79, Issue 3 https://doi.org/10.1007/s00248-019-01439-y	journal	September 2019
Deterministic and stochastic processes driving the shift in the prokaryotic community composition in wastewater treatment plants of a coastal Chinese city Hou, Liyuan; Mulla, Sikandar I.; Niño-Garcia, Juan Pablo Applied Microbiology and Biotechnology, Vol. 103, Issue 21-22 https://doi.org/10.1007/s00253-019-10177-7	journal	October 2019
Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone Graham, Emily B.; Crump, Alex R.; Kennedy, David W. Science of The Total Environment, Vol. 642 https://doi.org/10.1016/j.scitotenv.2018.05.256	journal	November 2018
Assessing Microbial Community Patterns During Incipient Soil Formation From Basalt Sengupta, Aditi; Stegen, James C.; Meira Neto, Antonio A. Journal of Geophysical Research: Biogeosciences, Vol. 124, Issue 4 https://doi.org/10.1029/2017jg004315	journal	April 2019
Global Isotope Hydrogeology―Review Jasechko, Scott Reviews of Geophysics, Vol. 57, Issue 3 https://doi.org/10.1029/2018rg000627	journal	July 2019
Drought Conditions Maximize the Impact of High‐Frequency Flow Variations on Thermal Regimes and Biogeochemical Function in the Hyporheic Zone Song, Xuehang; Chen, Xingyuan; Stegen, James Water Resources Research, Vol. 54, Issue 10 https://doi.org/10.1029/2018wr022586	journal	October 2018
Using Bayesian Networks for Sensitivity Analysis of Complex Biogeochemical Models Dai, Heng; Chen, Xingyuan; Ye, Ming Water Resources Research, Vol. 55, Issue 4 https://doi.org/10.1029/2018wr023589	journal	April 2019
Dam Operations and Subsurface Hydrogeology Control Dynamics of Hydrologic Exchange Flows in a Regulated River Reach Shuai, Pin; Chen, Xingyuan; Song, Xuehang Water Resources Research, Vol. 55, Issue 4 https://doi.org/10.1029/2018wr024193	journal	April 2019
Heterogeneity in Hyporheic Flow, Pore Water Chemistry, and Microbial Community Composition in an Alpine Streambed Nelson, Amelia R.; Sawyer, Audrey H.; Gabor, Rachel S. Journal of Geophysical Research: Biogeosciences, Vol. 124, Issue 11 https://doi.org/10.1029/2019jg005226	journal	November 2019
Analysis of the Effects of Dam Release Properties and Ambient Groundwater Flow on Surface Water‐Groundwater Exchange Over a 100‐km‐Long Reach Ferencz, Stephen B.; Cardenas, M. Bayani; Neilson, Bethany T. Water Resources Research, Vol. 55, Issue 11 https://doi.org/10.1029/2019wr025210	journal	November 2019
Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology Stegen, James C.; Johnson, Tim; Fredrickson, James K. Nature Communications, Vol. 9, Issue 1 https://doi.org/10.1038/s41467-018-02922-9	journal	February 2018
The effect of unsteady streamflow and stream-groundwater interactions on oxygen consumption in a sandy streambed Galloway, Jason; Fox, Aryeh; Lewandowski, Jörg Scientific Reports, Vol. 9, Issue 1 https://doi.org/10.1038/s41598-019-56289-y	journal	December 2019
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya Geomicrobiology Journal, Vol. 35, Issue 9 https://doi.org/10.1080/01490451.2018.1468834	journal	May 2018
Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments Smith, H. J.; Zelaya, A. J.; De León, K. B. FEMS Microbiology Ecology, Vol. 94, Issue 12 https://doi.org/10.1093/femsec/fiy191	journal	September 2018
Trends in dissolved organic matter cycling, sediment microbiomes, and methylmercury production across vegetation heterogeneity in a Great Lakes wetland Graham, Emily B.; Knelman, Joseph E.; Gabor, Rachel S. https://doi.org/10.1101/072017	posted_content	October 2017
Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes: Deterministic assembly of hyporheic microbiomes Graham, Emily B.; Crump, Alex R.; Resch, Charles T. Environmental Microbiology, Vol. 19, Issue 4 https://doi.org/10.1111/1462-2920.13720	journal	March 2017
Application of the microbial community coalescence concept to riverine networks: Riverine microbial community coalescence Mansour, India; Heppell, Catherine M.; Ryo, Masahiro Biological Reviews, Vol. 93, Issue 4 https://doi.org/10.1111/brv.12422	journal	April 2018
Key role of streambed moisture and flash storms for microbial resistance and resilience to long‐term drought Gionchetta, Giulia; Oliva, Francesc; Menéndez, Margarita Freshwater Biology https://doi.org/10.1111/fwb.13218	journal	December 2018
Responses of microbial activity in hyporheic pore water to biogeochemical changes in a drying headwater stream Harjung, Astrid; Perujo, Núria; Butturini, Andrea Freshwater Biology https://doi.org/10.1111/fwb.13258	journal	February 2019
Profiling the microbial community structure and functional diversity of a dam‐regulated river undergoing gravel bar restoration Serrana, Joeselle M.; Li, Bin; Sumi, Tetsuya Freshwater Biology, Vol. 66, Issue 11 https://doi.org/10.1111/fwb.13824	journal	September 2021
Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions Feng, Youzhi; Chen, Ruirui; Stegen, James C. Molecular Ecology, Vol. 27, Issue 24 https://doi.org/10.1111/mec.14914	journal	November 2018
Microbial Community Cohesion Mediates Community Turnover in Unperturbed Aquifers Danczak, Robert E.; Johnston, Michael D.; Kenah, Chris mSystems, Vol. 3, Issue 4 https://doi.org/10.1128/msystems.00066-18	journal	July 2018
Application of the microbial community coalescence concept to riverine networks Mansour, India; Heppell, Catherine M.; Ryo, Masahiro Freie Universität Berlin https://doi.org/10.17169/refubium-924	text	January 2018
Drought Conditions Maximize the Impact of High-Frequency Flow Variations on Thermal Regimes and Biogeochemical Function in the Hyporheic Zone Song, Xuehang; Chen, Xingyuan; Stegen, James EarthArXiv https://doi.org/10.17605/osf.io/jw4ph	text	January 2018
Evidence for Microbial Mediated NO3− Cycling Within Floodplain Sediments During Groundwater Fluctuations Bouskill, Nicholas J.; Conrad, Mark E.; Bill, Markus Frontiers in Earth Science, Vol. 7 https://doi.org/10.3389/feart.2019.00189	journal	July 2019
In-situ microbial colonization and its potential contribution on biofilm formation in subsurface sediments Lee, Ji-Hoon; Lee, Bong-Joo; Yun, Uk Journal of Applied Biological Chemistry, Vol. 62, Issue 1 https://doi.org/10.3839/jabc.2019.008	journal	March 2019
Assessing the effect of flood restoration on surface–subsurface interactions in Rohrschollen Island (Upper Rhine river – France) using integrated hydrological modeling and thermal infrared imaging Jeannot, Benjamin; Weill, Sylvain; Eschbach, David Hydrology and Earth System Sciences, Vol. 23, Issue 1 https://doi.org/10.5194/hess-23-239-2019	journal	January 2019
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya Taylor & Francis https://doi.org/10.6084/m9.figshare.7066493	text	January 2018
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya Taylor & Francis https://doi.org/10.6084/m9.figshare.7066493.v1	text	January 2018

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phylogenetic beta-diversity
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