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Accelerating molecular property calculations with nonorthonormal Krylov space methods

Journal Article · · Journal of Chemical Physics
DOI:https://doi.org/10.1063/1.4947245· OSTI ID:1250890
 [1];  [2];  [2];  [2]
  1. Univ. of California, Irvine, CA (United States); University of California, Irvine
  2. Univ. of California, Irvine, CA (United States)
Here, we formulate Krylov space methods for large eigenvalue problems and linear equation systems that take advantage of decreasing residual norms to reduce the cost of matrix-vector multiplication. The residuals are used as subspace basis without prior orthonormalization, which leads to generalized eigenvalue problems or linear equation systems on the Krylov space. These nonorthonormal Krylov space (nKs) algorithms are favorable for large matrices with irregular sparsity patterns whose elements are computed on the fly, because fewer operations are necessary as the residual norm decreases as compared to the conventional method, while errors in the desired eigenpairs and solution vectors remain small. We consider real symmetric and symplectic eigenvalue problems as well as linear equation systems and Sylvester equations as they appear in configuration interaction and response theory. The nKs method can be implemented in existing electronic structure codes with minor modifications and yields speed-ups of 1.2-1.8 in typical time-dependent Hartree-Fock and density functional applications without accuracy loss. The algorithm can compute entire linear subspaces simultaneously which benefits electronic spectra and force constant calculations requiring many eigenpairs or solution vectors. The nKs approach is related to difference density methods in electronic ground state calculations, and particularly efficient for integral direct computations of exchange-type contractions. By combination with resolution-of-the-identity methods for Coulomb contractions, three- to fivefold speed-ups of hybrid time-dependent density functional excited state and response calculations are achieved.
Research Organization:
Univ. of California, Irvine, CA (United States)
Sponsoring Organization:
USDOE; USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
Grant/Contract Number:
SC0008694
OSTI ID:
1250890
Alternate ID(s):
OSTI ID: 1250585
Journal Information:
Journal of Chemical Physics, Journal Name: Journal of Chemical Physics Journal Issue: 17 Vol. 144; ISSN JCPSA6; ISSN 0021-9606
Publisher:
American Institute of Physics (AIP)Copyright Statement
Country of Publication:
United States
Language:
English

References (97)

Response functions from Fourier component variational perturbation theory applied to a time-averaged quasienergy journal January 1998
Protein-Induced Color Shift of Carotenoids in β-Crustacyanin journal July 2015
Seminumerical calculation of the Hartree-Fock exchange matrix: Application to two-component procedures and efficient evaluation of local hybrid density functionals journal January 2012
Principles for a direct SCF approach to LICAO - MO ab - initio calculations : Direct journal September 1982
An unconventional scf method for calculations on large molecules journal June 1986
Improvements on the direct SCF method: Improved Direct SCF Method journal January 1989
A space-saving modification of Davidson's eigenvector algorithm journal November 1990
Derivative studies in hartree-fock and møller-plesset theories journal March 1979
Large-scaleRPA calculations of chiroptical properties of organic molecules: Program RPAC journal February 1983
Large-scaleRPA calculations of chiroptical properties of organic molecules: Program RPAC journal April 1983
Turbomole
  • Furche, Filipp; Ahlrichs, Reinhart; Hättig, Christof
  • Wiley Interdisciplinary Reviews: Computational Molecular Science, Vol. 4, Issue 2 https://doi.org/10.1002/wcms.1162
journal July 2013
The effect of non-optimal bases on the convergence of Krylov subspace methods journal May 2005
Towards an order- journal January 1998
A new method for large-scale Cl calculations journal August 1972
A multiconfigurational time-dependent hartree-fock approach journal August 1979
The determination of hyperpolarisabilities using density functional theory journal July 1993
Treatment of electronic excitations within the adiabatic approximation of time dependent density functional theory journal July 1996
Super-matrix methods journal May 1989
The iterative calculation of a few of the lowest eigenvalues and corresponding eigenvectors of large real-symmetric matrices journal January 1975
A generalization of the Davidson's method to large nonsymmetric eigenvalue problems journal February 1982
Solution of the large matrix equations which occur in response theory journal February 1988
Efficient use of the resolution of the identity approximation in time-dependent density functional calculations with hybrid density functionals journal August 2002
An efficient implementation of second analytical derivatives for density functional methods journal August 2002
Calculation of excitation energies within time-dependent density functional theory using auxiliary basis set expansions journal January 1997
Cadmium selenide semiconductor nanocrystals: a theoretical study journal May 1998
Time-dependent density functional theory within the Tamm–Dancoff approximation journal December 1999
Implementation of time-dependent density functional response equations journal May 1999
Time-dependent Hartree–Fock frequency-dependent polarizability calculation applied to divide-and-conquer electronic structure method journal January 2010
Efficient Semi-numerical Implementation of Global and Local Hybrid Functionals for Time-Dependent Density Functional Theory journal August 2015
Ligand Effects in the Synthesis of Ln 2+ Complexes by Reduction of Tris(cyclopentadienyl) Precursors Including C–H Bond Activation of an Indenyl Anion journal May 2015
Recent Advances in Wave Function-Based Methods of Molecular-Property Calculations journal December 2011
On the Efficiency of Algorithms for Solving Hartree–Fock and Kohn–Sham Response Equations journal April 2011
Modeling Fast Electron Dynamics with Real-Time Time-Dependent Density Functional Theory: Application to Small Molecules and Chromophores journal April 2011
Assessing Excited State Methods by Adiabatic Excitation Energies journal July 2011
Energy-Specific Linear Response TDHF/TDDFT for Calculating High-Energy Excited States journal October 2011
Derivation of the RPA (Random Phase Approximation) Equation of ATDDFT (Adiabatic Time Dependent Density Functional Ground State Response Theory) from an Excited State Variational Approach Based on the Ground State Functional journal July 2014
TD-DFT Performance for the Visible Absorption Spectra of Organic Dyes:  Conventional versus Long-Range Hybrids journal November 2007
Toward a systematic molecular orbital theory for excited states journal January 1992
Energy Transfer Followed by Electron Transfer in a Supramolecular Triad Composed of Boron Dipyrrin, Zinc Porphyrin, and Fullerene:  A Model for the Photosynthetic Antenna-Reaction Center Complex journal June 2004
Thioindigo Dyes:  Highly Accurate Visible Spectra with TD-DFT journal February 2006
Role of Donor−Acceptor Strengths and Separation on the Two-Photon Absorption Response of Cytotoxic Dyes:  A TD-DFT Study journal August 2005
Density Functional for Spectroscopy:  No Long-Range Self-Interaction Error, Good Performance for Rydberg and Charge-Transfer States, and Better Performance on Average than B3LYP for Ground States journal December 2006
Excited-State Structure of Oligothiophene Dendrimers: Computational and Experimental Study journal December 2010
A ruthenium(II) polypyridyl complex for direct imaging of DNA structure in living cells journal October 2009
Balanced basis sets of split valence, triple zeta valence and quadruple zeta valence quality for H to Rn: Design and assessment of accuracy journal January 2005
Accurate Coulomb-fitting basis sets for H to Rn journal January 2006
On the dimerization of chlorophyll in photosystem II journal January 2011
A perspective on nonresonant and resonant electronic response theory for time-dependent molecular properties journal January 2011
Ab initio non-adiabatic molecular dynamics journal January 2013
On the density matrix based approach to time-dependent density functional response theory journal April 2001
Long-range charge-transfer excited states in time-dependent density functional theory require non-local exchange journal August 2003
Gaussian basis sets of quadruple zeta valence quality for atoms H–Kr journal December 2003
Degenerate two-photon-absorption spectral studies of highly two-photon active organic chromophores journal March 2004
Stability Conditions for the Solutions of the Hartree—Fock Equations for Atomic and Molecular Systems. Application to the Pi‐Electron Model of Cyclic Polyenes journal November 1967
Analytical time-dependent density functional derivative methods within the RI-J approximation, an approach to excited states of large molecules journal February 2005
Finite lifetime effects on the polarizability within time-dependent density-functional theory journal June 2005
Nonlinear response theory with relaxation: The first-order hyperpolarizability journal November 2005
Time-dependent density functional theory investigation of the absorption, fluorescence, and phosphorescence spectra of solvated coumarins journal October 2006
Linear-scaling implementation of molecular response theory in self-consistent field electronic-structure theory journal April 2007
Real-time time-dependent density functional theory approach for frequency-dependent nonlinear optical response in photonic molecules journal October 2007
A density matrix-based method for the linear-scaling calculation of dynamic second- and third-order properties at the Hartree-Fock and Kohn-Sham density functional theory levels journal November 2007
Pseudospectral time-dependent density functional theory journal March 2008
Turbo charging time-dependent density-functional theory with Lanczos chains journal April 2008
Efficient linear-scaling calculation of response properties: Density matrix-based Laplace-transformed coupled-perturbed self-consistent field theory journal June 2008
Molecular-orbital-free algorithm for excited states in time-dependent perturbation theory journal August 2008
Representation independent algorithms for molecular response calculations in time-dependent self-consistent field theories journal February 2009
Property-optimized Gaussian basis sets for molecular response calculations journal October 2010
Efficient time-dependent density functional theory approximations for hybrid density functionals: Analytical gradients and parallelization journal February 2011
Transition moments and dynamic polarizabilities in a second order polarization propagator approach journal December 1980
Linear and nonlinear response functions for an exact state and for an MCSCF state journal April 1985
Direct atomic‐orbital‐based time‐dependent Hartree–Fock calculations of frequency‐dependent polarizabilities journal February 1992
A new mixing of Hartree–Fock and local density‐functional theories journal January 1993
The equation of motion coupled‐cluster method. A systematic biorthogonal approach to molecular excitation energies, transition probabilities, and excited state properties journal May 1993
Density‐functional thermochemistry. III. The role of exact exchange journal April 1993
A direct algorithm for self‐consistent‐field linear response theory and application to C 60 : Excitation energies, oscillator strengths, and frequency‐dependent polarizabilities journal July 1993
Extraction, through filter‐diagonalization, of general quantum eigenvalues or classical normal mode frequencies from a small number of residues or a short‐time segment of a signal. I. Theory and application to a quantum‐dynamics model journal May 1995
Efficient molecular numerical integration schemes journal January 1995
Rationale for mixing exact exchange with density functional approximations journal December 1996
Linear scaling computation of the Fock matrix journal April 1997
Linear scaling computation of the Fock matrix. II. Rigorous bounds on exchange integrals and incremental Fock build journal June 1997
First-order one-electron properties in the integral-direct coupled cluster singles and doubles model journal July 1997
Harnessing the meta-generalized gradient approximation for time-dependent density functional theory journal October 2012
Linear and sublinear scaling formation of Hartree–Fock-type exchange matrices journal August 1998
An efficient implementation of time-dependent density-functional theory for the calculation of excitation energies of large molecules journal November 1998
Gauge invariant coupled cluster response theory journal May 1999
Krylov-space algorithms for time-dependent Hartree–Fock and density functional computations journal July 2000
Multiresolution quantum chemistry in multiwavelet bases: time-dependent density functional theory with asymptotically corrected potentials in local density and generalized gradient approximations journal January 2005
Computational Variants of the Lanczos Method for the Eigenproblem journal January 1972
Time-Dependent Hartree—Fock Theory for Molecules journal July 1964
The Davidson Method journal January 1994
Iterative Methods for Sparse Linear Systems book January 2003
A Jacobi–Davidson Iteration Method for Linear Eigenvalue Problems journal April 1996
Thick-Restart Lanczos Method for Large Symmetric Eigenvalue Problems journal January 2000
Dynamic Thick Restarting of the Davidson, and the Implicitly Restarted Arnoldi Methods journal January 1998
Time-Dependent Density Functional Response Theory for Molecules book November 1995
An iteration method for the solution of the eigenvalue problem of linear differential and integral operators journal October 1950
Methods of conjugate gradients for solving linear systems journal December 1952

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Synthesis, Structure, and Magnetism of Tris(amide) [Ln{N(SiMe 3 ) 2 } 3 ] 1− Complexes of the Non-traditional +2 Lanthanide Ions journal May 2018
iVI: An iterative vector interaction method for large eigenvalue problems journal August 2017
Multistate hybrid time-dependent density functional theory with surface hopping accurately captures ultrafast thymine photodeactivation journal January 2019
Ultra-fast computation of electronic spectra for large systems by tight-binding based simplified Tamm-Dancoff approximation (sTDA-xTB) journal August 2016
A new efficient method for the calculation of interior eigenpairs and its application to vibrational structure problems journal March 2017
Relativistic four-component linear damped response TDDFT for electronic absorption and circular dichroism calculations journal November 2019
Iterative submatrix diagonalisation for large configuration interaction problems journal September 2017
Charge transfer in time-dependent density functional theory journal September 2017
Charge-Transfer in Time-Dependent Density Functional Theory text January 2017
Iterative submatrix diagonalisation for large configuration interaction problems text January 2017
Iterative submatrix diagonalisation for large configuration interaction problems text January 2017

Figures / Tables (5)


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