The MG-RAST Metagenomics Database and Portal in 2015

Wilke, Andreas; Bischof, Jared; Gerlach, Wolfgang; Glass, Elizabeth; Harrison, Travis; Keegan, Kevin; Paczian, Tobias; Trimble, William L.; Bagchi, Saurabh; Grama, Ananth; Chaterji, Somali; Meyer, Folker

doi:10.1093/nar/gkv1322

The MG-RAST Metagenomics Database and Portal in 2015

Journal Article · Wed Dec 09 00:00:00 EST 2015 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gkv1322· OSTI ID:1249423

Wilke, Andreas ^[1]; Bischof, Jared ^[1]; Gerlach, Wolfgang ^[1]; Glass, Elizabeth ^[1]; Harrison, Travis ^[1]; Keegan, Kevin ^[1]; Paczian, Tobias ^[1]; Trimble, William L. ^[1]; Bagchi, Saurabh ^[2]; Grama, Ananth ^[3]; Chaterji, Somali ^[3]; Meyer, Folker ^[1]

Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Chicago, IL (United States)
Purdue Univ., West Lafayette, IN (United States). School of Electrical & Computer Engineering
Purdue Univ., West Lafayette, IN (United States). Dept. of Computer Sciences

MG-RAST (http://metagenomics.anl.gov) is an opensubmission data portal for processing, analyzing, sharing and disseminating metagenomic datasets. Currently, the system hosts over 200 000 datasets and is continuously updated. The volume of submissions has increased 4-fold over the past 24 months, now averaging 4 terabasepairs per month. In addition to several new features, we report changes to the analysis workflow and the technologies used to scale the pipeline up to the required throughput levels. Lastly, to show possible uses for the data from MG-RAST, we present several examples integrating data and analyses from MG-RAST into popular third-party analysis tools or sequence alignment tools.

View Accepted Manuscript (DOE)

Research Organization:: Argonne National Laboratory (ANL)

Sponsoring Organization:: National Institutes of Health (NIH); USDOE Office of Science - Office of Advanced Scientific Computing Research

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1249423

Journal Information:: Nucleic Acids Research, Journal Name: Nucleic Acids Research Journal Issue: D1 Vol. 44; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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