Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Discovery of 2-Indole-acylsulfonamide Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods

Journal Article · · Journal of Medicinal Chemistry
Myeloid cell leukemia-1 (Mcl-1) is a member of the Bcl-2 family of proteins responsible for the regulation of programmed cell death. Amplification of Mcl-1 is a common genetic aberration in human cancer whose overexpression contributes to the evasion of apoptosis and is one of the major resistance mechanisms for many chemotherapies. Mcl-1 mediates its effects primarily through interactions with pro-apoptotic BH3 containing proteins that achieve high affinity for the target by utilizing four hydrophobic pockets in its binding groove. Here we describe the discovery of Mcl-1 inhibitors using fragment-based methods and structure-based design. These novel inhibitors exhibit low nanomolar binding affinities to Mcl-1 and >500-fold selectivity over Bcl-xL. Additionally, X-ray structures of lead Mcl-1 inhibitors when complexed to Mcl-1 provided detailed information on how these small-molecules bind to the target and were used extensively to guide compound optimization.
Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
National Cancer Institute (NCI); National Institutes of Health (NIH); USDOE Office of Science (SC), Basic Energy Sciences (BES) (SC-22)
Grant/Contract Number:
AC02-06CH11357
OSTI ID:
1247370
Journal Information:
Journal of Medicinal Chemistry, Journal Name: Journal of Medicinal Chemistry Journal Issue: 5 Vol. 59; ISSN 0022-2623
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
ENGLISH

References (39)

Inducing apoptosis and enhancing chemosensitivity to Gemcitabine via RNA interference targeting Mcl-1 gene in pancreatic carcinoma cell journal February 2008
Mechanism-based pharmacokinetic/pharmacodynamic meta-analysis of navitoclax (ABT-263) induced thrombocytopenia journal July 2014
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
The Hallmarks of Cancer journal January 2000
Cell Death journal January 2004
Profiling drug-like properties in discovery research journal June 2003
Development and optimization of a binding assay for the XIAP BIR3 domain using fluorescence polarization journal September 2004
Structural biology of the Bcl-2 family of proteins journal March 2004
Fragment-based discovery of potent inhibitors of the anti-apoptotic MCL-1 protein journal March 2014
The BH3 mimetic ABT-737 targets selective Bcl-2 proteins and efficiently induces apoptosis via Bak/Bax if Mcl-1 is neutralized journal November 2006
Hallmarks of Cancer: The Next Generation journal March 2011
Discovery of Potent Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods and Structure-Based Design journal December 2012
3-Substituted- N -(4-Hydroxynaphthalen-1-yl)arylsulfonamides as a Novel Class of Selective Mcl-1 Inhibitors: Structure-Based Design, Synthesis, SAR, and Biological Evaluation journal May 2014
Rational Use of Plasma Protein and Tissue Binding Data in Drug Design: Miniperspective journal August 2014
Structure-Guided Design of a Series of MCL-1 Inhibitors with High Affinity and Selectivity journal February 2015
Discovery of Tricyclic Indoles That Potently Inhibit Mcl-1 Using Fragment-Based Methods and Structure-Based Design journal April 2015
The BCL-2 protein family, BH3-mimetics and cancer therapy journal May 2015
Myeloid cell leukemia-1 is an important apoptotic survival factor in triple-negative breast cancer journal June 2015
A survey of the anti-apoptotic Bcl-2 subfamily expression in cancer types provides a platform to predict the efficacy of Bcl-2 antagonists in cancer therapy journal May 2010
Potent and selective small-molecule MCL-1 inhibitors demonstrate on-target cancer cell killing activity as single agents and in combination with ABT-263 (navitoclax) journal January 2015
An inhibitor of Bcl-2 family proteins induces regression of solid tumours journal May 2005
The landscape of somatic copy-number alteration across human cancers journal February 2010
Sensitivity to antitubulin chemotherapeutics is regulated by MCL1 and FBW7 journal March 2011
The MCL-1 BH3 helix is an exclusive MCL-1 inhibitor and apoptosis sensitizer journal June 2010
ABT-199, a potent and selective BCL-2 inhibitor, achieves antitumor activity while sparing platelets journal January 2013
Death and anti-death: tumour resistance to apoptosis journal April 2002
Small-molecule inhibitors of protein–protein interactions: progressing towards the dream journal April 2004
Control of apoptosis by the BCL-2 protein family: implications for physiology and therapy journal December 2013
Caspase-dependent apoptosis of COS-7 cells induced by Bax overexpression: differential effects of Bcl-2 and Bcl-xL on Bax-induced caspase activation and apoptosis journal October 1997
‘Seed’ analysis of off-target siRNAs reveals an essential role of Mcl-1 in resistance to the small-molecule Bcl-2/Bcl-XL inhibitor ABT-737 journal December 2006
The Bcl-2 apoptotic switch in cancer development and therapy journal February 2007
Structural insights into the degradation of Mcl-1 induced by BH3 domains journal March 2007
Bcl-2 and the regulation of programmed cell death journal January 1994
Phaser crystallographic software journal July 2007
Coot model-building tools for molecular graphics journal November 2004
The CCP4 suite programs for protein crystallography journal September 1994
Discovering High-Affinity Ligands for Proteins: SAR by NMR journal November 1996
ABT-263: A Potent and Orally Bioavailable Bcl-2 Family Inhibitor journal May 2008
Targeting Apoptosis Pathways in Cancer Therapy journal May 2005

Cited By (25)

Peptide-Directed Binding for the Discovery of Modulators of α-Helix-Mediated Protein-Protein Interactions: Proof-of-Concept Studies with the Apoptosis Regulator Mcl-1 journal August 2017
Establishing Drug Discovery and Identification of Hit Series for the Anti-apoptotic Proteins, Bcl-2 and Mcl-1 journal May 2019
Allosteric sensitization of proapoptotic BAX journal July 2017
Targeting MUC1-C suppresses BCL2A1 in triple-negative breast cancer journal May 2018
PTBP1 enhances miR-101-guided AGO2 targeting to MCL1 and promotes miR-101-induced apoptosis journal May 2018
Discovery of Mcl-1-specific inhibitor AZD5991 and preclinical activity in multiple myeloma and acute myeloid leukemia journal December 2018
Synthesis, Fungicidal Activity, and Structure Activity Relationship of β-Acylaminocycloalkylsulfonamides against Botrytis cinerea journal February 2017
Emerging approaches to target mitochondrial apoptosis in cancer cells journal January 2019
Discovery of DEBIC to correlate P-selectin inhibition and DNA intercalation in cancer therapy and complicated thrombosis journal December 2017
Virtual screening for potential inhibitors of Mcl-1 conformations sampled by normal modes, molecular dynamics, and nuclear magnetic resonance journal June 2017
Killing Two Cells with One Stone: Pharmacologic BCL-2 Family Targeting for Cancer Cell Death and Immune Modulation journal December 2016
Solution NMR Spectroscopy in Target-Based Drug Discovery journal August 2017
Discovery and biological characterization of potent myeloid cell leukemia-1 inhibitors journal December 2016
Synthesis of Indole-2-methylsulfonamides by Domino Sonogashira Coupling and Hydroamination Reaction journal April 2017
The MCL1 inhibitor S63845 is tolerable and effective in diverse cancer models journal October 2016
From basic apoptosis discoveries to advanced selective BCL-2 family inhibitors journal February 2017
Discovery of Mcl-1 inhibitors from integrated high throughput and virtual screening journal July 2018
Synthesis and cytotoxic characteristics displayed by a series of Ag( i )-, Au( i )- and Au( iii )-complexes supported by a common N-heterocyclic carbene journal January 2018
In silico approaches to identify novel myeloid cell leukemia-1 (Mcl-1) inhibitors for treatment of cancer journal August 2017
Unraveling the molecular mechanism of benzothiophene and benzofuran scaffold-merged compounds binding to anti-apoptotic Myeloid cell leukemia 1 journal December 2018
A luciferase-based assay identifies niclosamide derivatives antagonizing Mcl-1 through post-translational down-regulation preprint June 2019
1-Methyl-3-{4-[(4-(2-oxo-2,3-dihydro-1H-benzimidazol-1-yl)piperidin-1-yl)benzyl]}-2-phenylindole journal October 2018
Targeting cancer's Achilles’ heel: role of BCL-2 inhibitors in cellular senescence and apoptosis journal September 2019
Unraveling the molecular mechanism of benzothiophene and benzofuran scaffold-merged compounds binding to anti-apoptotic Myeloid cell leukemia 1 text January 2018
Unraveling the molecular mechanism of benzothiophene and benzofuran scaffold-merged compounds binding to anti-apoptotic Myeloid cell leukemia 1 text January 2018

Similar Records

Discovery of Potent Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods and Structure-Based Design
Journal Article · Sun Dec 16 23:00:00 EST 2012 · Journal of Medicinal Chemistry · OSTI ID:1061312

The MCL-1 BH3 helix is an exclusive MCL-1 inhibitor and apoptosis sensitizer
Journal Article · Mon Aug 30 00:00:00 EDT 2010 · Nat. Chem. Biol. · OSTI ID:1002562

Optimization of Potent and Selective Tricyclic Indole Diazepinone Myeloid Cell Leukemia-1 Inhibitors Using Structure-Based Design
Journal Article · Wed Jan 10 19:00:00 EST 2018 · Journal of Medicinal Chemistry · OSTI ID:1433690