Skip to main content
U.S. Department of Energy
Office of Scientific and Technical Information

Small-Molecule CD4-Mimics: Structure-Based Optimization of HIV-1 Entry Inhibition

Journal Article · · ACS Medicinal Chemistry Letters
 [1];  [2];  [1];  [3];  [1];  [4];  [1];  [5];  [5];  [3];  [6];  [5];  [2];  [1]
  1. Univ. of Pennsylvania, Philadelphia, PA (United States)
  2. Columbia Univ., New York, NY (United States)
  3. Johns Hopkins Univ., Baltimore, MD (United States)
  4. Bryn Mawr College, PA (United States)
  5. Harvard Medical School, Boston, MA (United States)
  6. Harvard Medical School, Boston, MA (United States); Harvard School of Public Health, Boston, MA (United States)
We report the optimization, based on computational, thermodynamic, and crystallographic data, of a series of small-molecule ligands of the Phe43 cavity of the envelope glycoprotein gp120 of human immunodeficiency virus (HIV) has been achieved. Importantly, biological evaluation revealed that the small-molecule CD4 mimics (4–7) inhibit HIV-1 entry into target cells with both significantly higher potency and neutralization breadth than previous congeners, while maintaining high selectivity for the target virus. Their binding mode was characterized via thermodynamic and crystallographic studies.
Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States). Advanced Photon Source (APS)
Sponsoring Organization:
National Institutes of Health (NIH); USDOE Office of Science (SC)
OSTI ID:
1245880
Journal Information:
ACS Medicinal Chemistry Letters, Journal Name: ACS Medicinal Chemistry Letters Journal Issue: 3 Vol. 7; ISSN 1948-5875
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
ENGLISH

References (17)

Improved protein-ligand docking using GOLD journal August 2003
Development and validation of a genetic algorithm for flexible docking 1 1Edited by F. E. Cohen journal April 1997
Synthesis of 2′-O-modified adenosine building blocks and application for RNA interference journal January 2008
Synthesis, antiviral activity and resistance of a novel small molecule HIV-1 entry inhibitor journal December 2015
A minimally cytotoxic CD4 mimic as an HIV entry inhibitor journal January 2016
Stereoselective synthesis of syn β-hydroxy cycloalkane carboxylates: transfer hydrogenation of cyclic β-keto esters via dynamic kinetic resolution journal August 2007
Identification of N-phenyl-N′-(2,2,6,6-tetramethyl-piperidin-4-yl)-oxalamides as a new class of HIV-1 entry inhibitors that prevent gp120 binding to CD4 journal September 2005
Structure-Based Design of a Small Molecule CD4-Antagonist with Broad Spectrum Anti-HIV-1 Activity journal August 2015
Structure-Based Design, Synthesis and Validation of CD4-Mimetic Small Molecule Inhibitors of HIV-1 Entry: Conversion of a Viral Entry Agonist to an Antagonist journal February 2014
Structure-Based Design and Synthesis of an HIV-1 Entry Inhibitor Exploiting X-ray and Thermodynamic Characterization journal January 2013
Structure of an HIV gp120 envelope glycoprotein in complex with the CD4 receptor and a neutralizing human antibody journal June 1998
Unliganded HIV-1 gp120 core structures assume the CD4-bound conformation with regulation by quaternary interactions and variable loops journal March 2012
CD4 mimetics sensitize HIV-1-infected cells to ADCC journal May 2015
Tenofovir-based pre-exposure prophylaxis for HIV prevention: evolving evidence journal January 2012
Optimization of CD4/gp120 Inhibitors by Thermodynamic-Guided Alanine-Scanning Mutagenesis: Optimization of Protein/Protein Inhibitors journal December 2012
Effectiveness and Safety of Tenofovir Gel, an Antiretroviral Microbicide, for the Prevention of HIV Infection in Women journal July 2010
CD4-Mimetic Small Molecules Sensitize Human Immunodeficiency Virus to Vaccine-Elicited Antibodies journal April 2014

Cited By (10)

Amino Acid Changes in the HIV-1 gp41 Membrane Proximal Region Control Virus Neutralization Sensitivity journal October 2016
Co-receptor Binding Site Antibodies Enable CD4-Mimetics to Expose Conserved Anti-cluster A ADCC Epitopes on HIV-1 Envelope Glycoproteins journal October 2016
Driving HIV-1 into a Vulnerable Corner by Taking Advantage of Viral Adaptation and Evolution journal March 2017
Virtual Screening, Biological Evaluation, and 3D-QSAR Studies of New HIV-1 Entry Inhibitors That Function via the CD4 Primary Receptor journal November 2018
Specific Noncovalent Interactions Determine Optimal Structure of a Buried Ligand Moiety: QM/MM and Pure QM Modeling of Complexes of the Small-Molecule CD4 Mimetics and HIV-1 gp120 journal February 2018
Molecular design opportunities presented by solvent‐exposed regions of target proteins journal April 2019
Crystal structures of 6-chloroindan-1-one and 6-bromoindan-1-one exhibit different intermolecular packing interactions journal October 2016
Comparison of Uncleaved and Mature Human Immunodeficiency Virus Membrane Envelope Glycoprotein Trimers journal April 2018
Two Families of Env Antibodies Efficiently Engage Fc-Gamma Receptors and Eliminate HIV-1-Infected Cells journal November 2018
The Discovery and Development of Oxalamide and Pyrrole Small Molecule Inhibitors of gp120 and HIV Entry - A Review journal October 2019

Similar Records

Structure-Based Design, Synthesis, and Characterization of Dual Hotspot Small-Molecule HIV-1 Entry Inhibitors
Journal Article · Tue Jun 19 00:00:00 EDT 2012 · J. Med. Chem. · OSTI ID:1041338

Cryo-EM structures of HIV-1 trimer bound to CD4-mimetics BNM-III-170 and M48U1 adopt a CD4-bound open conformation
Journal Article · Sun Mar 28 20:00:00 EDT 2021 · Nature Communications · OSTI ID:1816554

Histidine 375 Modulates CD4 Binding in HIV-1 CRF01_AE Envelope Glycoproteins
Journal Article · Tue Dec 06 19:00:00 EST 2016 · Journal of Virology · OSTI ID:1459631