Target site choice of the related transposable elements Tc1 and Tc3 of Caenorhabditis elegans
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January 1994 |
A Feature-Based Approach to Modeling Protein–DNA Interactions
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August 2008 |
The complex between phage 434 repressor DNA-binding domain and operator site OR3: structural differences between consensus and non-consensus half-sites
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December 1993 |
AGRIS and AtRegNet. A Platform to Link cis-Regulatory Elements and Transcription Factors into Regulatory Networks
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March 2006 |
Geometric analysis and comparison of protein-DNA interfaces: why is there no simple code for recognition? 1 1Edited by R. Ebright
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August 2000 |
Generality of a functional initiator consensus sequence
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December 1996 |
A census of human transcription factors: function, expression and evolution
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April 2009 |
Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro
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April 1987 |
JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles
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November 2009 |
BIPA: a database for protein–nucleic acid interaction in 3D structures
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April 2009 |
DNA binding activities of the Caenorhabditis elegans Tc3 transposase
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January 1994 |
A method for registration of 3-D shapes
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February 1992 |
Divergent homeo box proteins recognize similar DNA sequences in Drosophila
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April 1988 |
Human transcription factor protein interaction networks
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February 2022 |
Winged helix proteins
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February 2000 |
AbdB-like Hox proteins stabilize DNA binding by the Meis1 homeodomain proteins.
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November 1997 |
Clustering by Passing Messages Between Data Points
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February 2007 |
Prediction of TF target sites based on atomistic models of protein-DNA complexes
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October 2008 |
Cis requirements for transposition of Tc1-like transposons in C. elegans
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September 1999 |
ProTherm and ProNIT: thermodynamic databases for proteins and protein-nucleic acid interactions
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January 2006 |
Maximally Efficient Modeling of DNA Sequence Motifs at All Levels of Complexity
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February 2011 |
Atomistic modeling of protein–DNA interaction specificity: progress and applications
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August 2012 |
The many faces of the helix-turn-helix domain: Transcription regulation and beyond
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April 2005 |
Computational prediction and experimental verification of novel IdeR binding sites in the upstream sequences of Mycobacterium tuberculosis open reading frames
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March 2005 |
Sequence-specific interaction of the Salmonella Hin recombinase in both major and minor grooves of DNA.
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July 1992 |
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
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January 2009 |
Identification of transcription factor binding sites with variable-order Bayesian networks
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March 2005 |
Transcriptional regulatory code of a eukaryotic genome
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September 2004 |
Transcription Initiation at Its Most Basic Level
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November 2003 |
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation
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December 2007 |
Search for additional replication terminators in the Bacillus subtilis 168 chromosome.
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May 1997 |
NPIDB: nucleic acid—protein interaction database
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November 2012 |
CENP-B box and pJα sequence distribution in human alpha satellite higher-order repeats (HOR)
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November 2006 |
Indirect readout of DNA sequence at the primary-kink site in the CAP-DNA complex: alteration of DNA binding specificity through alteration of DNA kinking
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November 2001 |
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila
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December 2007 |
The quorum-sensing transcription factor TraR decodes its DNA binding site by direct contacts with DNA bases and by detection of DNA flexibility: TraR decodes its DNA binding site
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March 2007 |
DNA sequence requirements for transcriptional initiator activity in mammalian cells.
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January 1994 |
On the Transcriptional Regulation of Methicillin Resistance: MecI REPRESSOR IN COMPLEX WITH ITS OPERATOR
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February 2004 |
Contacts between gamma delta resolvase and the gamma delta res site.
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March 1987 |
Replication Terminator Protein-Based Replication Fork-Arrest Systems in Various
Bacillus
Species
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July 1998 |
Alignment of recombination sites in Hin-mediated site-specific DNA recombination.
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September 1991 |
AthaMap, integrating transcriptional and post-transcriptional data
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January 2009 |
ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data
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November 2012 |
DNAase footprinting a simple method for the detection of protein-DNA binding specificity
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January 1978 |
Genome-Wide Mapping of in Vivo Protein-DNA Interactions
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June 2007 |
Identification of DNA-binding protein target sequences by physical effective energy functions. Free energy analysis of lambda repressor-DNA complexes
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text
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January 2007 |
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information
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October 2007 |
The many faces of the helix-turn-helix domain: Transcription regulation and beyond
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journal
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April 2005 |
High resolution crystal structure of a paired (Pax) class cooperative homeodomain dimer on DNA
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September 1995 |
TRANSFAC(R) and its module TRANSCompel(R): transcriptional gene regulation in eukaryotes
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January 2006 |
Binding geometry of α-helices that recognize DNA
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December 1995 |
HNF1, a homeoprotein member of the hepatic transcription regulatory network
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September 1992 |
The Protein Data Bank
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January 2000 |
Inclusion of neighboring base interdependencies substantially improves genome-wide prokaryotic transcription factor binding site prediction
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May 2010 |
Analysis of a Ubiquitous Promoter Element in a Primitive Eukaryote: Early Evolution of the Initiator Element
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March 1999 |
Identification and characterization of new DNA replication terminators in Bacillus subtilis
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July 1995 |
Prediction of DtxR regulon: Identification of binding sites and operons controlled by Diphtheria toxin repressor in Corynebacterium diphtheriae
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January 2004 |
Selection for Unequal Densities of σ70 Promoter-Like Signals in Different Regions of Large Bacterial Genomes
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January 2006 |
The Initiator Element: A Paradigm for Core Promoter Heterogeneity within Metazoan Protein-coding Genes
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January 1998 |
3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures
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July 2008 |
Structural Basis of Core Promoter Recognition in a Primitive Eukaryote
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November 2003 |
New restriction endonucleases from Flavobacterium okeanokoites (FokI) and Micrococcus luteus (MluI)
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December 1981 |
Protein-DNA binding specificity predictions with structural models
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October 2005 |
TFinDit: transcription factor-DNA interaction data depository
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January 2012 |
PRODORIC: prokaryotic database of gene regulation
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January 2003 |
PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations
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July 2004 |
The hierarchy of KorB binding at its 12 binding sites on the broad-host-range plasmid RK2 and modulation of this binding by IncC1 protein 1 1Edited by J. Karn
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January 2000 |
Robust and rigorous identification of tissue-specific genes by statistically extending tau score
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December 2022 |
Improved predictions of transcription factor binding sites using physicochemical features of DNA
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August 2012 |
PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations
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May 2007 |
Energetics of protein–DNA interactions
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January 2007 |
REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila
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October 2010 |
Direct inference of protein-DNA interactions using compressed sensing methods
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August 2011 |
RegTransBase--a database of regulatory sequences and interactions in a wide range of prokaryotic genomes
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January 2007 |
Structural Classification of HTH DNA-binding Domains and Protein – DNA Interaction Modes
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September 1996 |
Variable structure motifs for transcription factor binding sites
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journal
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January 2010 |
Identification of DNA-binding protein target sequences by physical effective energy functions, free energy analysis of lambda repressor-DNA complexes
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journal
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January 2007 |
Three enhancements to the inference of statistical protein-DNA potentials
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journal
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November 2012 |
HTPSELEX--a database of high-throughput SELEX libraries for transcription factor binding sites
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journal
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January 2006 |
Visualization and Labeling of Point Clouds in Virtual Reality
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text
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January 2018 |
3D-footprint: a database for the structural analysis of protein–DNA complexes
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September 2009 |
Large-Scale Discovery of Promoter Motifs in Drosophila melanogaster
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January 2007 |
Differential recognition of OR1 and OR3 by bacteriophage 434 repressor and Cro.
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November 1993 |