Rnnotator
Software
·
OSTI ID:1231620
We report a software pipeline, called Rnnotator, that de novo assembles transcriptomes exclusively from short read sequences to faciliate function annotation and expression profiling. In this initial version, Rnnotator takes single-end, stranded RNA-Seq short reads, and outputs assembled contigs with transcription direction. With Sufficient sequencing coverage Rnnotator is capable to form full-length transcripts.
- Short Name / Acronym:
- RNNOTATOR; 002840WKSTN00
- Version:
- 00
- Programming Language(s):
- Medium: X; OS: unix; Compatibility: Workstation
- Research Organization:
- Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
- Sponsoring Organization:
- USDOE
- Contributing Organization:
- Zhong Wang Jeffrey Martin Xiandong Meng
- DOE Contract Number:
- AC02-05CH11231
- OSTI ID:
- 1231620
- Country of Origin:
- United States
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