The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections

Boundy-Mills, K.; Hess, Matthias; Bennett, A. R.; Ryan, Matthew; Kang, Seogchan; Nobles, David; Eisen, Jonathan A.; Inderbitzin, Patrik; Sitepu, Irnayuli R.; Torok, Tamas; Brown, Daniel R; Cho, Juliana; Wertz, John E.; Mukherjee, Supratim; Cady, Sherry L.; McCluskey, Kevin

doi:10.1128/AEM.01176-15

Title: The United States Culture Collection Network (USCCN): Enhancing Microbial Genomics Research through Living Microbe Culture Collections

Journal Article · Tue Sep 01 00:00:00 EDT 2015 · Applied and Environmental Microbiology

DOI:https://doi.org/10.1128/AEM.01176-15· OSTI ID:1229928

Boundy-Mills, K.; Hess, Matthias; Bennett, A. R.; Ryan, Matthew; Kang, Seogchan; Nobles, David; Eisen, Jonathan A.; Inderbitzin, Patrik; Sitepu, Irnayuli R.; Torok, Tamas; Brown, Daniel R; Cho, Juliana; Wertz, John E.; Mukherjee, Supratim; Cady, Sherry L.; McCluskey, Kevin

The mission of the United States Culture Collection Network (USCCN; http://usccn.org) is "to facilitate the safe and responsible utilization of microbial resources for research, education, industry, medicine, and agriculture for the betterment of human kind." Microbial culture collections are a key component of life science research, biotechnology, and emerging global biobased economies. Representatives and users of several microbial culture collections from the United States and Europe gathered at the University of California, Davis, to discuss how collections of microorganisms can better serve users and stakeholders and to showcase existing resources available in public culture collections.

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Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC05-76RL01830

OSTI ID:: 1229928

Report Number(s):: PNNL-SA-114048; KP1704020

Journal Information:: Applied and Environmental Microbiology, Vol. 81, Issue 17; ISSN 0099-2240

Publisher:: American Society for Microbiology

Country of Publication:: United States

Language:: English

References (18)

Investment into the future of microbial resources: culture collection funding models and BRC business plans for biological resource centres Smith, David; McCluskey, Kevin; Stackebrandt, Erko SpringerPlus, Vol. 3, Issue 1 https://doi.org/10.1186/2193-1801-3-81	journal	February 2014
Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa McCluskey, Kevin; Wiest, Aric E.; Grigoriev, Igor V. G3: Genes\|Genomes\|Genetics, Vol. 1, Issue 4 https://doi.org/10.1534/g3.111.000307	journal	September 2011
Yeast tolerance to the ionic liquid 1-ethyl-3-methylimidazolium acetate Sitepu, Irnayuli R.; Shi, Shuang; Simmons, Blake A. FEMS Yeast Research, Vol. 14, Issue 8 https://doi.org/10.1111/1567-1364.12224	journal	November 2014
Carbon source utilization and inhibitor tolerance of 45 oleaginous yeast species Sitepu, Irnayuli; Selby, Tylan; Lin, Ting Journal of Industrial Microbiology & Biotechnology, Vol. 41, Issue 7 https://doi.org/10.1007/s10295-014-1447-y	journal	May 2014
Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project Kyrpides, Nikos C.; Woyke, Tanja; Eisen, Jonathan A. Standards in Genomic Sciences, Vol. 9, Issue 3 https://doi.org/10.4056/sigs.5068949	journal	December 2013
The importance of sample archiving in microbial ecology Cary, S. Craig; Fierer, Noah Nature Reviews Microbiology, Vol. 12, Issue 12 https://doi.org/10.1038/nrmicro3382	journal	November 2014
The heterogeneity of public ex situ collections of microorganisms: Empirical evidence about conservation practices, industry spillovers and public goods Stromberg, Per M.; Dedeurwaerdere, Tom; Pascual, Unai Environmental Science & Policy, Vol. 33 https://doi.org/10.1016/j.envsci.2013.04.003	journal	November 2013
Putting cells to sleep for future science Stacey, Glyn N.; Day, John G. Nature Biotechnology, Vol. 32, Issue 4 https://doi.org/10.1038/nbt.2869	journal	April 2014
Strategies for Developing and Innovating Living Stocks Collections: An ESA Workshop Report Parsons, Jill Petraglia; Duke, Clifford S. Bulletin of the Ecological Society of America, Vol. 94, Issue 1 https://doi.org/10.1890/0012-9623-94.1.118	journal	January 2013
Identification of oleaginous yeast strains able to accumulate high intracellular lipids when cultivated in alkaline pretreated corn stover Sitepu, Irnayuli R.; Jin, Mingjie; Fernandez, J. Enrique Applied Microbiology and Biotechnology, Vol. 98, Issue 17 https://doi.org/10.1007/s00253-014-5944-8	journal	July 2014
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea Wu, Dongying; Hugenholtz, Philip; Mavromatis, Konstantinos Nature, Vol. 462, Issue 7276 https://doi.org/10.1038/nature08656	journal	December 2009
Public Service Collections and Biological Resource Centers of Microorganisms Smith, David; Fritze, Dagmar; Stackebrandt, Erko The Prokaryotes https://doi.org/10.1007/978-3-642-30194-0_14	book	January 2013
Type material in the NCBI Taxonomy Database Federhen, Scott Nucleic Acids Research, Vol. 43, Issue D1 https://doi.org/10.1093/nar/gku1127	journal	November 2014
4 Genome Data Drives Change at Culture Collections McCluskey, Kevin; Wiest, Aric; Boundy-Mills, Kyria Fungal Genomics https://doi.org/10.1007/978-3-642-45218-5_4	book	January 2014
Culture Collections Smith, David Advances in Applied Microbiology https://doi.org/10.1016/B978-0-12-394318-7.00004-8	book	January 2012
Designing the Microbial Research Commons Uhlir, Paul F. https://doi.org/10.2172/1165601	report	October 2011
Culture Collections Dugan, F. M.; Tang, J. S. Encyclopedia of Food Microbiology https://doi.org/10.1006/rwfm.1999.0420	book	January 1999
Culture Collections Smith, David Genetics and Breeding of Edible Mushrooms https://doi.org/10.1201/9780203753682-2	book	January 1993

Cited By (3)

Preserving US microbe collections sparks future discoveries Boundy‐Mills, K.; McCluskey, K.; Elia, P. Journal of Applied Microbiology, Vol. 129, Issue 2 https://doi.org/10.1111/jam.14525	journal	December 2019
Preservation, Characterization and Exploitation of Microbial Biodiversity: The Perspective of the Italian Network of Culture Collections De Vero, Luciana; Boniotti, Maria Beatrice; Budroni, Marilena Microorganisms, Vol. 7, Issue 12 https://doi.org/10.3390/microorganisms7120685	journal	December 2019
‘Community evolution’ – laboratory strains and pedigrees in the age of genomics Dorman, Matthew J.; Thomson, Nicholas R. Microbiology, Vol. 166, Issue 3 https://doi.org/10.1099/mic.0.000869	journal	March 2020

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