Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

Sanders, Jon G.; Beichman, Annabel C.; Roman, Joe; Scott, Jarrod J.; Emerson, David; McCarthy, James J.; Girguis, Peter R.

doi:10.1038/ncomms9285

Title: Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

Journal Article · Tue Sep 22 00:00:00 EDT 2015 · Nature Communications

DOI:https://doi.org/10.1038/ncomms9285· OSTI ID:1218871

^[1]; Beichman, Annabel C. ^[2]; Roman, Joe ^[3]; Scott, Jarrod J. ^[4]; Emerson, David ^[4]; McCarthy, James J. ^[1]; Girguis, Peter R. ^[1]

Harvard Univ., Cambridge, MA (United States)
Univ. of California, Los Angeles, CA (United States)
Harvard Univ., Cambridge, MA (United States); Univ. of Vermont, Burlington, VT (United States)
Bigelow Lab. for Ocean Sciences, East Boothbay, ME (United States)

Mammals host gut microbiomes of immense physiological consequence, but the determinants of diversity in these communities remain poorly understood. Diet appears to be the dominant factor, but host phylogeny also seems to be an important, if unpredictable, correlate. Here we show that baleen whales, which prey on animals (fish and crustaceans), harbor unique gut microbiomes with surprising parallels in functional capacity and higher level taxonomy to those of terrestrial herbivores. These similarities likely reflect a shared role for fermentative metabolisms despite a shift in primary carbon sources from plant-derived to animal-derived polysaccharides, such as chitin. In contrast, protein catabolism and essential amino acid synthesis pathways in baleen whale microbiomes more closely resemble those of terrestrial carnivores. Our results demonstrate that functional attributes of the microbiome can vary independently even given an animal-derived diet, illustrating how diet and evolutionary history combine to shape microbial diversity in the mammalian gut.

View Accepted Manuscript (DOE)

Cite

Export

Save

Research Organization:: Argonne National Laboratory (ANL), Argonne, IL (United States)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1218871

Journal Information:: Nature Communications, Vol. 6; ISSN 2041-1723

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

Citation Metrics:

Cited by: 129 works

Citation information provided by
Web of Science

References (58)

Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S Pyrosequencing Kumar, Purnima S.; Brooker, Michael R.; Dowd, Scot E. PLoS ONE, Vol. 6, Issue 6 https://doi.org/10.1371/journal.pone.0020956	journal	June 2011
Bacterial chitin degradation—mechanisms and ecophysiological strategies Beier, Sara; Bertilsson, Stefan Frontiers in Microbiology, Vol. 4 https://doi.org/10.3389/fmicb.2013.00149	journal	January 2013
Baleen whales: preliminary evidence for forestomach microbial fermentation. Herwig, R. P.; Staley, J. T.; Nerini, M. K. Applied and Environmental Microbiology, Vol. 47, Issue 2 https://doi.org/10.1128/aem.47.2.421-423.1984	journal	January 1984
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB DeSantis, T. Z.; Hugenholtz, P.; Larsen, N. Applied and Environmental Microbiology, Vol. 72, Issue 7, p. 5069-5072 https://doi.org/10.1128/AEM.03006-05	journal	July 2006
Evidence of cellulose metabolism by the giant panda gut microbiome Zhu, L.; Wu, Q.; Dai, J. Proceedings of the National Academy of Sciences, Vol. 108, Issue 43 https://doi.org/10.1073/pnas.1017956108	journal	October 2011
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences Langille, Morgan G. I.; Zaneveld, Jesse; Caporaso, J. Gregory Nature Biotechnology, Vol. 31, Issue 9 https://doi.org/10.1038/nbt.2676	journal	August 2013
FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix Price, M. N.; Dehal, P. S.; Arkin, A. P. Molecular Biology and Evolution, Vol. 26, Issue 7 https://doi.org/10.1093/molbev/msp077	journal	April 2009
KEGG: Kyoto Encyclopedia of Genes and Genomes Kanehisa, Minoru; Goto, Susumu Nucleic Acids Research, Vol. 28, Issue 1, p. 27-30 https://doi.org/10.1093/nar/28.1.27	journal	January 2000
A phylogenetic blueprint for a modern whale Gatesy, John; Geisler, Jonathan H.; Chang, Joseph Molecular Phylogenetics and Evolution, Vol. 66, Issue 2 https://doi.org/10.1016/j.ympev.2012.10.012	journal	February 2013
Methanomassiliicoccus luminyensis gen. nov., sp. nov., a methanogenic archaeon isolated from human faeces Dridi, B.; Fardeau, M. -L.; Ollivier, B. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, Vol. 62, Issue Pt 8 https://doi.org/10.1099/ijs.0.033712-0	journal	August 2012
UPARSE: highly accurate OTU sequences from microbial amplicon reads Edgar, Robert C. Nature Methods, Vol. 10, Issue 10 https://doi.org/10.1038/nmeth.2604	journal	August 2013
Succession of endophytic fungi and arbuscular mycorrhizal fungi associated with the growth of plant and their correlation with secondary metabolites in the roots of plants Dang, Hanli; Zhang, Tao; Wang, Zhongke BMC Plant Biology, Vol. 21, Issue 1 https://doi.org/10.1186/s12870-021-02942-6	journal	April 2021
Worlds within worlds: evolution of the vertebrate gut microbiota Ley, Ruth E.; Lozupone, Catherine A.; Hamady, Micah Nature Reviews Microbiology, Vol. 6, Issue 10 https://doi.org/10.1038/nrmicro1978	journal	October 2008
Animals in a bacterial world, a new imperative for the life sciences McFall-Ngai, Margaret; Hadfield, Michael G.; Bosch, Thomas C. G. Proceedings of the National Academy of Sciences, Vol. 110, Issue 9 https://doi.org/10.1073/pnas.1218525110	journal	February 2013
Evolution of Mammals and Their Gut Microbes Ley, R. E.; Hamady, M.; Lozupone, C. Science, Vol. 320, Issue 5883 https://doi.org/10.1126/science.1155725	journal	June 2008
Chitin production by krill Nicol, Stephen; Hosie, Graham W. Biochemical Systematics and Ecology, Vol. 21, Issue 2 https://doi.org/10.1016/0305-1978(93)90035-P	journal	March 1993
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy Wang, Q.; Garrity, G. M.; Tiedje, J. M. Applied and Environmental Microbiology, Vol. 73, Issue 16 https://doi.org/10.1128/AEM.00062-07	journal	June 2007
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample Caporaso, J. G.; Lauber, C. L.; Walters, W. A. Proceedings of the National Academy of Sciences, Vol. 108, Issue Supplement_1 https://doi.org/10.1073/pnas.1000080107	journal	June 2010
The Whale Pump: Marine Mammals Enhance Primary Productivity in a Coastal Basin Roman, Joe; McCarthy, James J. PLoS ONE, Vol. 5, Issue 10 https://doi.org/10.1371/journal.pone.0013255	journal	October 2010
The chemical composition and energy contents of copepods and cladocerans in relation to their size Vijverberg, J.; Frank, H. Freshwater Biology, Vol. 6, Issue 4 https://doi.org/10.1111/j.1365-2427.1976.tb01618.x	journal	August 1976
Cell Surface Enzyme Attachment Is Mediated by Family 37 Carbohydrate-Binding Modules, Unique to Ruminococcus albus Ezer, A.; Matalon, E.; Jindou, S. Journal of Bacteriology, Vol. 190, Issue 24 https://doi.org/10.1128/jb.00609-08	journal	October 2008
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics Cantarel, B. L.; Coutinho, P. M.; Rancurel, C. Nucleic Acids Research, Vol. 37, Issue Database https://doi.org/10.1093/nar/gkn663	journal	January 2009
An Insect Herbivore Microbiome with High Plant Biomass-Degrading Capacity Suen, Garret; Scott, Jarrod J.; Aylward, Frank O. PLoS Genetics, Vol. 6, Issue 9 https://doi.org/10.1371/journal.pgen.1001129	journal	September 2010
PyNAST: a flexible tool for aligning sequences to a template alignment Caporaso, J. G.; Bittinger, K.; Bushman, F. D. Bioinformatics, Vol. 26, Issue 2 https://doi.org/10.1093/bioinformatics/btp636	journal	November 2009
Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome Abubucker, Sahar; Segata, Nicola; Goll, Johannes PLoS Computational Biology, Vol. 8, Issue 6 https://doi.org/10.1371/journal.pcbi.1002358	journal	June 2012
QIIME allows analysis of high-throughput community sequencing data Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse Nature Methods, Vol. 7, Issue 5 https://doi.org/10.1038/nmeth.f.303	journal	April 2010
Animals in a bacterial world, a new imperative for the life sciences Nicole, Dubilier,; G., Hadfield, Michael; Nicole, King, The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/ecbw-3974	text	January 2013
Complex Carbohydrate Utilization by the Healthy Human Microbiome Cantarel, Brandi L.; Lombard, Vincent; Henrissat, Bernard PLoS ONE, Vol. 7, Issue 6 https://doi.org/10.1371/journal.pone.0028742	journal	June 2012
Diet rapidly and reproducibly alters the human gut microbiome David, Lawrence A.; Maurice, Corinne F.; Carmody, Rachel N. Nature, Vol. 505, Issue 7484 https://doi.org/10.1038/nature12820	journal	December 2013
A novel family of carbohydrate-binding modules identified with Ruminococcus albus proteins Xu, Qi; Morrison, Mark; Nelson, Karen E. FEBS Letters, Vol. 566, Issue 1-3 https://doi.org/10.1016/j.febslet.2004.04.005	journal	April 2004
The Pfam protein families database Punta, M.; Coggill, P. C.; Eberhardt, R. Y. Nucleic Acids Research, Vol. 40, Issue D1 https://doi.org/10.1093/nar/gkr1065	journal	November 2011
Methylotrophic methanogenic Thermoplasmata implicated in reduced methane emissions from bovine rumen Poulsen, Morten; Schwab, Clarissa; Borg Jensen, Bent Nature Communications, Vol. 4, Issue 1 https://doi.org/10.1038/ncomms2432	journal	February 2013
Biosynthesis of trimethylamine oxide in calanoid copepods. seasonal changes in trimethylamine monooxygenase activity Strom, A. R. Marine Biology, Vol. 51, Issue 1 https://doi.org/10.1007/BF00389028	journal	March 1979
Diet and phylogeny shape the gut microbiota of Antarctic seals: a comparison of wild and captive animals: The gut microbiota of wild and captive Antarctic seals Nelson, Tiffanie M.; Rogers, Tracey L.; Carlini, Alejandro R. Environmental Microbiology, Vol. 15, Issue 4 https://doi.org/10.1111/1462-2920.12022	journal	November 2012
The Occurrence and Characteristics of Chitinoclastic Bacteria in the sea Zobell, Claude E.; Rittenberg, Sydney C. Journal of Bacteriology, Vol. 35, Issue 3 https://doi.org/10.1128/JB.35.3.275-287.1938	journal	January 1938
CDD: a Conserved Domain Database for the functional annotation of proteins Marchler-Bauer, A.; Lu, S.; Anderson, J. B. Nucleic Acids Research, Vol. 39, Issue Database https://doi.org/10.1093/nar/gkq1189	journal	November 2010
Spatial and temporal variations of the bacterial community in the bovine digestive tract Michelland, R. J.; Monteils, V.; Zened, A. Journal of Applied Microbiology, Vol. 107, Issue 5 https://doi.org/10.1111/j.1365-2672.2009.04346.x	journal	November 2009
Cutadapt removes adapter sequences from high-throughput sequencing reads Martin, Marcel EMBnet.journal, Vol. 17, Issue 1 https://doi.org/10.14806/ej.17.1.200	journal	May 2011
Convergence of gut microbiomes in myrmecophagous mammals Delsuc, Frédéric; Metcalf, Jessica L.; Wegener Parfrey, Laura Molecular Ecology, Vol. 23, Issue 6 https://doi.org/10.1111/mec.12501	journal	October 2013
“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens Paul, Kristina; Nonoh, James O.; Mikulski, Lena Applied and Environmental Microbiology, Vol. 78, Issue 23 https://doi.org/10.1128/AEM.02193-12	journal	September 2012
The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes Meyer, F.; Paarmann, D.; D'Souza, M. BMC Bioinformatics, Vol. 9, Issue 1 https://doi.org/10.1186/1471-2105-9-386	journal	September 2008
Evidence from the digestive tract on phylogenetic relationships in ungulates and whales Journal of Zoological Systematics and Evolutionary Research, Vol. 39, Issue 1-2 https://doi.org/10.1046/j.1439-0469.2001.00158.x	journal	March 2001
Glycan Degradation (GlyDeR) Analysis Predicts Mammalian Gut Microbiota Abundance and Host Diet-Specific Adaptations Eilam, O.; Zarecki, R.; Oberhardt, M. mBio, Vol. 5, Issue 4 https://doi.org/10.1128/mbio.01526-14	journal	July 2014
The Gut Bacterial Community of Mammals from Marine and Terrestrial Habitats Nelson, Tiffanie M.; Rogers, Tracey L.; Brown, Mark V. PLoS ONE, Vol. 8, Issue 12 https://doi.org/10.1371/journal.pone.0083655	journal	December 2013
The microbiome of North Sea copepods Gerdts, G.; Brandt, P.; Kreisel, K. Helgoland Marine Research, Vol. 67, Issue 4 https://doi.org/10.1007/s10152-013-0361-4	journal	June 2013
The abundance and variety of carbohydrate-active enzymes in the human gut microbiota Kaoutari, Abdessamad El; Armougom, Fabrice; Gordon, Jeffrey I. Nature Reviews Microbiology, Vol. 11, Issue 7 https://doi.org/10.1038/nrmicro3050	journal	June 2013
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms Caporaso, J. Gregory; Lauber, Christian L.; Walters, William A. The ISME Journal, Vol. 6, Issue 8 https://doi.org/10.1038/ismej.2012.8	journal	March 2012
Search and clustering orders of magnitude faster than BLAST Edgar, Robert C. Bioinformatics, Vol. 26, Issue 19, p. 2460-2461 https://doi.org/10.1093/bioinformatics/btq461	journal	August 2010
Fecal Methanogens and Vertebrate Evolution Hackstein, Johannes H. P.; van Alen, Theo A. Evolution, Vol. 50, Issue 2 https://doi.org/10.1111/j.1558-5646.1996.tb03868.x	journal	April 1996
Production rates of volatile fatty acids in the minke whale( Balaenoptera acutorostrata ) forestomach Olsen, Monica Alterskjær; Mathiesen, Svein Disch British Journal of Nutrition, Vol. 75, Issue 1 https://doi.org/10.1079/bjn19960107	journal	January 1996
Metagenomic biomarker discovery and explanation Segata, Nicola; Izard, Jacques; Waldron, Levi Genome Biology, Vol. 12, Issue 6 https://doi.org/10.1186/gb-2011-12-6-r60	journal	January 2011
The biochemical composition of krill, Euphausia superba Dana, from South Georgia Clarke, Andrew Journal of Experimental Marine Biology and Ecology, Vol. 43, Issue 3 https://doi.org/10.1016/0022-0981(80)90049-0	journal	January 1980
Microbial Dysbiosis During Simian Immunodeficiency Virus Infection is Partially Reverted with Combination Anti-retroviral Therapy Blum, Faith C.; Hardy, Britney L.; Bishop-Lilly, Kimberly A. Scientific Reports, Vol. 10, Issue 1 https://doi.org/10.1038/s41598-020-63196-0	journal	April 2020
The Bamboo-Eating Giant Panda Harbors a Carnivore-Like Gut Microbiota, with Excessive Seasonal Variations Xue, Zhengsheng; Zhang, Wenping; Wang, Linghua mBio, Vol. 6, Issue 3 https://doi.org/10.1128/mbio.00022-15	journal	July 2015
Fecal Methanogens and Vertebrate Evolution Hackstein, Johannes H. P.; van Alen, Theo A. Evolution, Vol. 50, Issue 2 https://doi.org/10.2307/2410831	journal	April 1996
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans Muegge, B. D.; Kuczynski, J.; Knights, D. Science, Vol. 332, Issue 6032 https://doi.org/10.1126/science.1198719	journal	May 2011
Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP) Dowd, Scot E.; Callaway, Todd R.; Wolcott, Randall D. BMC Microbiology, Vol. 8, Issue 1 https://doi.org/10.1186/1471-2180-8-125	journal	January 2008
Whales as marine ecosystem engineers Roman, Joe; Estes, James A.; Morissette, Lyne Frontiers in Ecology and the Environment, Vol. 12, Issue 7 https://doi.org/10.1890/130220	journal	September 2014

Cited By (52)

Associations between Afrotropical bats, parasites, and microbial symbionts Lutz Holly, L.; Jackson Elliot, W.; Dick Carl, W. BioRxiv https://doi.org/10.1101/340109	posted_content	September 2018
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes Amato, Katherine R.; G. Sanders, Jon; Song, Se Jin The ISME Journal, Vol. 13, Issue 3 https://doi.org/10.1038/s41396-018-0175-0	journal	July 2018
Beyond 16S rRNA Community Profiling: Intra-Species Diversity in the Gut Microbiota Ellegaard, Kirsten M.; Engel, Philipp Frontiers in Microbiology, Vol. 7 https://doi.org/10.3389/fmicb.2016.01475	journal	September 2016
Temporal and Regional Variability in the Skin Microbiome of Humpback Whales along the Western Antarctic Peninsula Bierlich, K. C.; Miller, Carolyn; DeForce, Emelia Applied and Environmental Microbiology, Vol. 84, Issue 5 https://doi.org/10.1128/aem.02574-17	journal	December 2017
Tiny microbes, enormous impacts: what matters in gut microbiome studies? Debelius, Justine; Song, Se Jin; Vazquez-Baeza, Yoshiki Genome Biology, Vol. 17, Issue 1 https://doi.org/10.1186/s13059-016-1086-x	journal	October 2016
Coordinated transformation of the gut microbiome and lipidome of bowhead whales provides novel insights into digestion Miller, Carolyn A.; Holm, Henry C.; Horstmann, Lara The ISME Journal, Vol. 14, Issue 3 https://doi.org/10.1038/s41396-019-0549-y	journal	December 2019
Allometry and Ecology of the Bilaterian Gut Microbiome Sherrill-Mix, Scott; McCormick, Kevin; Lauder, Abigail mBio, Vol. 9, Issue 2 https://doi.org/10.1128/mbio.00319-18	journal	March 2018
Geography, seasonality, and host‐associated population structure influence the fecal microbiome of a genetically depauparate Arctic mammal Bird, Samantha; Prewer, Erin; Kutz, Susan Ecology and Evolution, Vol. 9, Issue 23 https://doi.org/10.1002/ece3.5768	journal	November 2019
Unprecedented Diversity of ssDNA Phages from the Family Microviridae Detected within the Gut of a Protochordate Model Organism (Ciona robusta) Creasy, Alexandria; Rosario, Karyna; Leigh, Brittany Viruses, Vol. 10, Issue 8 https://doi.org/10.3390/v10080404	journal	July 2018
Age-associated microbiome shows the giant panda lives on hemicelluloses, not on cellulose Zhang, Wenping; Liu, Wenbin; Hou, Rong The ISME Journal, Vol. 12, Issue 5 https://doi.org/10.1038/s41396-018-0051-y	journal	February 2018
Taxonomic differences of gut microbiomes drive cellulolytic enzymatic potential within hind-gut fermenting mammals Finlayson-Trick, Emma C. L.; Getz, Landon J.; Slaine, Patrick D. PLOS ONE, Vol. 12, Issue 12 https://doi.org/10.1371/journal.pone.0189404	journal	December 2017
Comparative study on intestinal bacterial communities of Boleophthalmus pectinirostris and Periophthalmus magnuspinnatus with different sexes and feeding strategies Ma, Rongrong; Wang, Sikai; Zhao, Feng Annals of Microbiology, Vol. 68, Issue 3 https://doi.org/10.1007/s13213-018-1324-4	journal	January 2018
Stable isotope analysis of fecal material provides insight into the diet of fin whales Arregui, Marina; Borrell, Asunción; Víkingsson, Gisli Marine Mammal Science, Vol. 34, Issue 4 https://doi.org/10.1111/mms.12504	journal	March 2018
Characterizing the microbiota in gastrointestinal tract segments of Rhabdophis subminiatus : Dynamic changes and functional predictions Tang, Wenjiao; Zhu, Guangxiang; Shi, Qian MicrobiologyOpen, Vol. 8, Issue 7 https://doi.org/10.1002/mbo3.789	journal	December 2018
Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks Wu, Yuqin; Li, Jianhui; Qin, Xin PLOS ONE, Vol. 13, Issue 10 https://doi.org/10.1371/journal.pone.0198985	journal	October 2018
Dynamic microbiome evolution in social bees Kwong, Waldan K.; Medina, Luis A.; Koch, Hauke Science Advances, Vol. 3, Issue 3 https://doi.org/10.1126/sciadv.1600513	journal	March 2017
Marine Animal Microbiomes: Toward Understanding Host–Microbiome Interactions in a Changing Ocean Apprill, Amy Frontiers in Marine Science, Vol. 4 https://doi.org/10.3389/fmars.2017.00222	journal	July 2017
Terrestriality and bacterial transfer: A comparative study of gut microbiomes in sympatric Malagasy mammals Perofsky, Amanda C.; Lewis, Rebecca J.; Meyers, Lauren Ancel The ISME Journal https://doi.org/10.1101/293282	journal	April 2018
Effects of host species and environment on the skin microbiome of Plethodontid salamanders Muletz Wolz, Carly R.; Yarwood, Stephanie A.; Campbell Grant, Evan H. Journal of Animal Ecology, Vol. 87, Issue 2 https://doi.org/10.1111/1365-2656.12726	journal	August 2017
Metagenomic Study Suggests That the Gut Microbiota of the Giant Panda (Ailuropoda melanoleuca) May Not Be Specialized for Fiber Fermentation Guo, Wei; Mishra, Sudhanshu; Zhao, Jiangchao Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.00229	journal	February 2018
High diversity and unique composition of gut microbiomes in pygmy (Kogia breviceps) and dwarf (K. sima) sperm whales Erwin, Patrick M.; Rhodes, Ryan G.; Kiser, Kevin B. Scientific Reports, Vol. 7, Issue 1 https://doi.org/10.1038/s41598-017-07425-z	journal	August 2017
The human microbiome in evolution Davenport, Emily R.; Sanders, Jon G.; Song, Se Jin BMC Biology, Vol. 15, Issue 1 https://doi.org/10.1186/s12915-017-0454-7	journal	December 2017
Metagenomics reveals functional synergy and novel polysaccharide utilization loci in the Castor canadensis fecal microbiome Armstrong, Zachary; Mewis, Keith; Liu, Feng The ISME Journal, Vol. 12, Issue 11 https://doi.org/10.1038/s41396-018-0215-9	journal	July 2018
Rates of gut microbiome divergence in mammals Nishida, Alex H.; Ochman, Howard Molecular Ecology, Vol. 27, Issue 8 https://doi.org/10.1111/mec.14473	journal	January 2018
Proteome and microbiota analysis reveals alterations of liver-gut axis under different stocking density of Peking ducks Wu, Yuqin; Li, Jianhui; Qin, Xin PLOS ONE https://doi.org/10.1101/335570	journal	May 2018
Ecology and Host Identity Outweigh Evolutionary History in Shaping the Bat Microbiome Lutz, Holly L.; Jackson, Elliot W.; Webala, Paul W. mSystems, Vol. 4, Issue 6 https://doi.org/10.1128/msystems.00511-19	journal	November 2019
Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes Laura, Baldo,; Lluís, Pretus, Joan; Lluís, Riera, Joan Nature Publishing Group https://doi.org/10.5451/unibas-ep58837	text	January 2017
Chitinase genes ( CHIA s) provide genomic footprints of a post-Cretaceous dietary radiation in placental mammals Emerling, Christopher A.; Delsuc, Frédéric; Nachman, Michael W. Science Advances, Vol. 4, Issue 5 https://doi.org/10.1126/sciadv.aar6478	journal	May 2018
Comparative genomics and metagenomics analyses of endangered Père David’s deer (Elaphurus davidianus) provide insights into population recovery Zhang, Xuejing; Deng, Cao; Ding, Jingjing BioRxiv https://doi.org/10.1101/073528	journal	September 2016
Coordinated change at the colony level in fruit bat fur microbiomes through time Kolodny, Oren; Weinberg, Maya; Reshef, Leah Nature Ecology & Evolution, Vol. 3, Issue 1 https://doi.org/10.1038/s41559-018-0731-z	journal	December 2018
Beyond Fermentation: Other Important Services Provided to Endothermic Herbivores by their Gut Microbiota Dearing, M. Denise; Kohl, Kevin D. Integrative and Comparative Biology, Vol. 57, Issue 4 https://doi.org/10.1093/icb/icx020	journal	June 2017
Skin microbiome of coral reef fish is highly variable and driven by host phylogeny and diet Chiarello, Marlène; Auguet, Jean-Christophe; Bettarel, Yvan Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0530-4	journal	August 2018
The Brain of the Domestic Bos taurus: Weight, Encephalization and Cerebellar Quotients, and Comparison with Other Domestic and Wild Cetartiodactyla Ballarin, Cristina; Povinelli, Michele; Granato, Alberto PLOS ONE, Vol. 11, Issue 4 https://doi.org/10.1371/journal.pone.0154580	journal	April 2016
Comparing Microbiome Sampling Methods in a Wild Mammal: Fecal and Intestinal Samples Record Different Signals of Host Ecology, Evolution Ingala, Melissa R.; Simmons, Nancy B.; Wultsch, Claudia Frontiers in Microbiology, Vol. 9 https://doi.org/10.3389/fmicb.2018.00803	journal	May 2018
Conservation metagenomics: a new branch of conservation biology Wei, Fuwen; Wu, Qi; Hu, Yibo Science China Life Sciences, Vol. 62, Issue 2 https://doi.org/10.1007/s11427-018-9423-3	journal	December 2018
Dispersal limitation promotes the diversification of the mammalian gut microbiota Moeller, Andrew H.; Suzuki, Taichi A.; Lin, Dana Proceedings of the National Academy of Sciences, Vol. 114, Issue 52 https://doi.org/10.1073/pnas.1700122114	journal	December 2017
Comparison of the gut microbiota of captive common bottlenose dolphins Tursiops truncatus in three aquaria Suzuki, A.; Segawa, T.; Sawa, S. Journal of Applied Microbiology, Vol. 126, Issue 1 https://doi.org/10.1111/jam.14109	journal	October 2018
Microbial communities in different regions of the gastrointestinal tract in East Asian finless porpoises (Neophocaena asiaeorientalis sunameri) Wan, Xiao-Ling; McLaughlin, Richard William; Zheng, Jin-Song Scientific Reports, Vol. 8, Issue 1 https://doi.org/10.1038/s41598-018-32512-0	journal	September 2018
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time Groussin, Mathieu; Mazel, Florent; Sanders, Jon G. Nature Communications, Vol. 8, Issue 1 https://doi.org/10.1038/ncomms14319	journal	February 2017
Marine mammals harbor unique microbiotas shaped by and yet distinct from the sea Bik, Elisabeth M.; Costello, Elizabeth K.; Switzer, Alexandra D. Nature Communications, Vol. 7, Issue 1 https://doi.org/10.1038/ncomms10516	journal	February 2016
Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes Baldo, Laura; Pretus, Joan Lluís; Riera, Joan Lluís The ISME Journal, Vol. 11, Issue 9 https://doi.org/10.1038/ismej.2017.62	journal	May 2017
Phylogeography and Ecological Niche Shape the Cichlid Fish Gut Microbiota in Central American and African Lakes Baldo, Laura; Riera, Joan Lluís; Salzburger, Walter Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.02372	journal	October 2019
The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch Michel, Alice J.; Ward, Lewis M.; Goffredi, Shana K. Apollo - University of Cambridge Repository https://doi.org/10.17863/cam.27737	collection	January 2018
Experimental Evidence for Adaptation to Species-Specific Gut Microbiota in House Mice Moeller, Andrew H.; Gomes-Neto, João C.; Mantz, Sara mSphere, Vol. 4, Issue 4 https://doi.org/10.1128/msphere.00387-19	journal	July 2019
Terrestriality and bacterial transfer: a comparative study of gut microbiomes in sympatric Malagasy mammals Perofsky, Amanda C.; Lewis, Rebecca J.; Meyers, Lauren Ancel The ISME Journal, Vol. 13, Issue 1 https://doi.org/10.1038/s41396-018-0251-5	journal	August 2018
Sequence-based analysis of the genus Ruminococcus resolves its phylogeny and reveals strong host association La Reau, Alex J.; Meier-Kolthoff, Jan P.; Suen, Garret Microbial Genomics, Vol. 2, Issue 12 https://doi.org/10.1099/mgen.0.000099	journal	December 2016
The life aquatic: advances in marine vertebrate genomics Kelley, Joanna L.; Brown, Anthony P.; Therkildsen, Nina Overgaard Nature Reviews Genetics, Vol. 17, Issue 9 https://doi.org/10.1038/nrg.2016.66	journal	July 2016
Comparative Analyses of Vertebrate Gut Microbiomes Reveal Convergence between Birds and Bats Song, Se Jin; Sanders, Jon G.; Delsuc, Frédéric mBio, Vol. 11, Issue 1 https://doi.org/10.1128/mbio.02901-19	journal	January 2020
The Pacific harbor seal gut microbiota in Mexico: Its relationship with diet and functional inferences Pacheco-Sandoval, Arlette; Schramm, Yolanda; Heckel, Gisela PLOS ONE, Vol. 14, Issue 8 https://doi.org/10.1371/journal.pone.0221770	journal	August 2019
Links between Natural Variation in the Microbiome and Host Fitness in Wild Mammals Suzuki, Taichi A. Integrative and Comparative Biology, Vol. 57, Issue 4 https://doi.org/10.1093/icb/icx104	journal	July 2017
The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finch Michel, Alice J.; Ward, Lewis M.; Goffredi, Shana K. Microbiome, Vol. 6, Issue 1 https://doi.org/10.1186/s40168-018-0555-8	journal	September 2018
A survey of the sperm whale ( Physeter catodon ) commensal microbiome Li, Chang; Tan, Xiaoxuan; Bai, Jie PeerJ, Vol. 7 https://doi.org/10.7717/peerj.7257	journal	January 2019

Similar Records

The Phylogenomic Diversity of Herbivore-Associated Fibrobacter spp. Is Correlated to Lignocellulose-Degrading Potential

Journal Article · Wed Dec 26 00:00:00 EST 2018 · mSphere · OSTI ID:1218871

Neumann, Anthony P.; Suen, Garret; Rodrigues, ed., Jorge M.

Communities of microbial eukaryotes in the mammalian gut within the context of environmental eukaryotic diversity

Journal Article · Thu Jun 19 00:00:00 EDT 2014 · Frontiers in Microbiology · OSTI ID:1218871

Parfrey, Laura Wegener; Walters, William A.; Lauber, Christian L.; +10 more

Diets with and without edible cricket support a similar level of diversity in the gut microbiome of dogs

Journal Article · Tue Sep 10 00:00:00 EDT 2019 · PeerJ · OSTI ID:1218871

Jarett, Jessica K.; Carlson, Anne; Rossoni Serao, Mariana; +3 more

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
Biological sciences
ecology
evolution
microbiology

Title: Baleen whales host a unique gut microbiome with similarities to both carnivores and herbivores

Citation Formats

References (58)

Cited By (52)

Similar Records

Related Subjects