Draft genome sequence of Paenbacillus polymyxa strain Mc5Re-14, an antagonistic root endophyte of Matricaria chamomilla

Koeberl, Martina; White, Richard A.; Erschen, Sabine; El-Arabi, Tarek F.; Jansson, Janet K.; Berg, Gabriele

doi:10.1128/genomeA.00861-15

Draft genome sequence of Paenbacillus polymyxa strain Mc5Re-14, an antagonistic root endophyte of Matricaria chamomilla

Journal Article · Thu Aug 06 00:00:00 EDT 2015 · Genome Announcements, 3(4):Article No. e00861-15

DOI:https://doi.org/10.1128/genomeA.00861-15· OSTI ID:1214888

Koeberl, Martina; White, Richard A.; Erschen, Sabine; El-Arabi, Tarek F.; Jansson, Janet K.; Berg, Gabriele

Paenbacillus polymyxa strain Mc5Re-14 was isolated from the inner root tissue of Matricaria chamomilla (e.g German chamomile). The draft genome of Paenbacillus polymyxa strain Mc5Re-14 revealed promising antagonistic in vitro activity against plant and opportunistic human pathogens. Putative genes involved in plant pathogen suppression and plant growth-promotion were identified.

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (US), Environmental Molecular Sciences Laboratory (EMSL)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC05-76RL01830

OSTI ID:: 1214888

Report Number(s):: PNNL-SA-111003; 48784

Journal Information:: Genome Announcements, 3(4):Article No. e00861-15, Journal Name: Genome Announcements, 3(4):Article No. e00861-15

Country of Publication:: United States

Language:: English

References (14)

The RAST Server: Rapid Annotations using Subsystems Technology Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A. BMC Genomics, Vol. 9, Issue 1, Article No. 75 https://doi.org/10.1186/1471-2164-9-75	journal	January 2008
The microbiome of medicinal plants: diversity and importance for plant growth, quality and health Köberl, Martina; Schmidt, Ruth; Ramadan, Elshahat M. Frontiers in Microbiology, Vol. 4 https://doi.org/10.3389/fmicb.2013.00400	journal	January 2013
Effects of bacterial inoculants on the indigenous microbiome and secondary metabolites of chamomile plants Schmidt, Ruth; Köberl, Martina; Mostafa, Amr Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00064	journal	January 2014
Improved microbial gene identification with GLIMMER Delcher, A. Nucleic Acids Research, Vol. 27, Issue 23 https://doi.org/10.1093/nar/27.23.4636	journal	December 1999
Desert Farming Benefits from Microbial Potential in Arid Soils and Promotes Diversity and Plant Health Köberl, Martina; Müller, Henry; Ramadan, Elshahat M. PLoS ONE, Vol. 6, Issue 9 https://doi.org/10.1371/journal.pone.0024452	journal	September 2011
Digital DNA-DNA hybridization for microbial species delineation by means of genome-to-genome sequence comparison Auch, Alexander F.; von Jan, Mathias; Klenk, Hans-Peter Standards in Genomic Sciences, Vol. 2, Issue 1 https://doi.org/10.4056/sigs.531120	journal	January 2010
Mind the Gap: Upgrading Genomes with Pacific Biosciences RS Long-Read Sequencing Technology English, Adam C.; Richards, Stephen; Han, Yi PLoS ONE, Vol. 7, Issue 11 https://doi.org/10.1371/journal.pone.0047768	journal	November 2012
BASys: a web server for automated bacterial genome annotation Van Domselaar, G. H.; Stothard, P.; Shrivastava, S. Nucleic Acids Research, Vol. 33, Issue Web Server https://doi.org/10.1093/nar/gki593	journal	July 2005
Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs Auch, Alexander F.; Klenk, Hans-Peter; Göker, Markus Standards in Genomic Sciences, Vol. 2, Issue 1 https://doi.org/10.4056/sigs.541628	journal	January 2010
Bacillus and Streptomyces were selected as broad-spectrum antagonists against soilborne pathogens from arid areas in Egypt Köberl, Martina; Ramadan, Elshahat M.; Adam, Mohamed FEMS Microbiology Letters, Vol. 342, Issue 2 https://doi.org/10.1111/1574-6968.12089	journal	February 2013
Genome sequence-based species delimitation with confidence intervals and improved distance functions Meier-Kolthoff, Jan P.; Auch, Alexander F.; Klenk, Hans-Peter BMC Bioinformatics, Vol. 14, Issue 1 https://doi.org/10.1186/1471-2105-14-60	journal	January 2013
The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST) Overbeek, Ross; Olson, Robert; Pusch, Gordon D. Nucleic Acids Research, Vol. 42, Issue D1 https://doi.org/10.1093/nar/gkt1226	journal	November 2013
Novel Giant Siphovirus from Bacillus anthracis Features Unusual Genome Characteristics Ganz, Holly H.; Law, Christina; Schmuki, Martina PLoS ONE, Vol. 9, Issue 1 https://doi.org/10.1371/journal.pone.0085972	journal	January 2014
Complete Genome Sequence of Paenibacillus polymyxa SC2, a Strain of Plant Growth-Promoting Rhizobacterium with Broad-Spectrum Antimicrobial Activity Ma, M.; Wang, C.; Ding, Y. Journal of Bacteriology, Vol. 193, Issue 1 https://doi.org/10.1128/JB.01234-10	journal	October 2010

Cited By (2)

Current Perspectives on Plant Growth-Promoting Rhizobacteria Parray, Javid A.; Jan, Sumira; Kamili, Azra N. Journal of Plant Growth Regulation, Vol. 35, Issue 3 https://doi.org/10.1007/s00344-016-9583-4	journal	March 2016
Draft genome sequence, disease-resistance genes, and phenotype of a Paenibacillus terrae strain (NK3-4) with the potential to control plant diseases Yu, Wen Qing; Zheng, Gui Ping; Qiu, De Wen Genome, Vol. 61, Issue 10 https://doi.org/10.1139/gen-2018-0113	journal	October 2018

Similar Records

Draft Genome Sequence of Paenibacillus polymyxa Strain Mc5Re-14, an Antagonistic Root Endophyte of Matricaria chamomilla

Journal Article · Thu Aug 06 00:00:00 EDT 2015 · Genome Announcements · OSTI ID:1214778

Identification of a compound isolated from German chamomile (Matricaria chamomilla) with dermal sensitization potential

Journal Article · Tue Feb 28 23:00:00 EST 2017 · Toxicology and Applied Pharmacology · OSTI ID:22690929

Draft Genome Sequence of Streptomyces sp. Strain Wb2n-11, a Desert Isolate with Broad-Spectrum Antagonism against Soilborne Phytopathogens

Journal Article · Thu Aug 06 00:00:00 EDT 2015 · Genome Announcements · OSTI ID:1243248

Related Subjects

Environmental Molecular Sciences Laboratory

Draft genome sequence of Paenbacillus polymyxa strain Mc5Re-14, an antagonistic root endophyte of Matricaria chamomilla

Citation Formats

References (14)

Cited By (2)

Similar Records

Related Subjects