Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and Cleavage

Wang, Ruiying; Preamplume, Gan; Terns, Michael P.; Terns, Rebecca M.; Li, Hong

doi:10.1016/j.str.2010.11.014

Interaction of the Cas6 Riboendonuclease with CRISPR RNAs: Recognition and Cleavage

Journal Article · Mon Jan 31 23:00:00 EST 2011 · Structure

DOI:https://doi.org/10.1016/j.str.2010.11.014· OSTI ID:1198434

Wang, Ruiying; Preamplume, Gan; Terns, Michael P.; Terns, Rebecca M.; Li, Hong

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Sponsoring Organization:: USDOE

Grant/Contract Number:: W-31109-ENG-38

OSTI ID:: 1198434

Journal Information:: Structure, Journal Name: Structure Journal Issue: 2 Vol. 19; ISSN 0969-2126

Publisher:: ElsevierCopyright Statement

Country of Publication:: United Kingdom

Language:: English

References (33)

Corynebacterium diphtheriae spoligotyping based on combined use of two CRISPR loci Mokrousov, Igor; Limeschenko, Elena; Vyazovaya, Anna Biotechnology Journal, Vol. 2, Issue 7 https://doi.org/10.1002/biot.200700035	journal	July 2007
Spoligotyping for Molecular Epidemiology of the Mycobacterium tuberculosis Complex Driscoll, Jeffrey R. Molecular Epidemiology of Microorganisms https://doi.org/10.1007/978-1-60327-999-4_10	book	January 2009
Intervening Sequences of Regularly Spaced Prokaryotic Repeats Derive from Foreign Genetic Elements Mojica, Francisco J. M.; D�ez-Villase�or, Chc)sar; Garc�a-Mart�nez, Jes�s Journal of Molecular Evolution, Vol. 60, Issue 2 https://doi.org/10.1007/s00239-004-0046-3	journal	February 2005
Surface, subunit interfaces and interior of oligomeric proteins Janin, Joël; Miller, Susan; Chothia, Cyrus Journal of Molecular Biology, Vol. 204, Issue 1 https://doi.org/10.1016/0022-2836(88)90606-7	journal	November 1988
[20] Processing of X-ray diffraction data collected in oscillation mode Otwinowski, Zbyszek; Minor, Wladek Macromolecular Crystallography Part A, 307-326 https://doi.org/10.1016/S0076-6879(97)76066-X	book	January 1997
[31] Treatment of multiwavelength anomalous diffraction data as a special case of multiple isomorphous replacement Ramakrishnan, V.; Biou, Valérie Methods in Enzymology https://doi.org/10.1016/S0076-6879(97)76077-4	book	January 1997
Regulatory RNAs in Bacteria Waters, Lauren S.; Storz, Gisela Cell, Vol. 136, Issue 4 https://doi.org/10.1016/j.cell.2009.01.043	journal	February 2009
RNA-Guided RNA Cleavage by a CRISPR RNA-Cas Protein Complex Hale, Caryn R.; Zhao, Peng; Olson, Sara Cell, Vol. 139, Issue 5 https://doi.org/10.1016/j.cell.2009.07.040	journal	November 2009
The CRISPR System: Small RNA-Guided Defense in Bacteria and Archaea Karginov, Fedor V.; Hannon, Gregory J. Molecular Cell, Vol. 37, Issue 1 https://doi.org/10.1016/j.molcel.2009.12.033	journal	January 2010
CRISPR-based adaptive and heritable immunity in prokaryotes van der Oost, John; Jore, Matthijs M.; Westra, Edze R. Trends in Biochemical Sciences, Vol. 34, Issue 8 https://doi.org/10.1016/j.tibs.2009.05.002	journal	August 2009
Self versus non-self discrimination during CRISPR RNA-directed immunity Marraffini, Luciano A.; Sontheimer, Erik J. Nature, Vol. 463, Issue 7280 https://doi.org/10.1038/nature08703	journal	January 2010
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea Marraffini, Luciano A.; Sontheimer, Erik J. Nature Reviews Genetics, Vol. 11, Issue 3 https://doi.org/10.1038/nrg2749	journal	February 2010
CRISPR — a widespread system that provides acquired resistance against phages in bacteria and archaea Sorek, Rotem; Kunin, Victor; Hugenholtz, Philip Nature Reviews Microbiology, Vol. 6, Issue 3 https://doi.org/10.1038/nrmicro1793	journal	March 2008
Identification of genes that are associated with DNA repeats in prokaryotes Jansen, Ruud.; Embden, Jan. D. A. van; Gaastra, Wim. Molecular Microbiology, Vol. 43, Issue 6 https://doi.org/10.1046/j.1365-2958.2002.02839.x	journal	March 2002
Cas6 is an endoribonuclease that generates guide RNAs for invader defense in prokaryotes Carte, J.; Wang, R.; Li, H. Genes & Development, Vol. 22, Issue 24 https://doi.org/10.1101/gad.1742908	journal	December 2008
PROCHECK: a program to check the stereochemical quality of protein structures Laskowski, R. A.; MacArthur, M. W.; Moss, D. S. Journal of Applied Crystallography, Vol. 26, Issue 2 https://doi.org/10.1107/S0021889892009944	journal	April 1993
Improved methods for building protein models in electron density maps and the location of errors in these models Jones, T. A.; Zou, J. Y.; Cowan, S. W. Acta Crystallographica Section A Foundations of Crystallography, Vol. 47, Issue 2, p. 110-119 https://doi.org/10.1107/S0108767390010224	journal	March 1991
PHENIX : building new software for automated crystallographic structure determination Adams, Paul D.; Grosse-Kunstleve, Ralf W.; Hung, Li-Wei Acta Crystallographica Section D Biological Crystallography, Vol. 58, Issue 11 https://doi.org/10.1107/S0907444902016657	journal	October 2002
Coot model-building tools for molecular graphics Emsley, Paul; Cowtan, Kevin Acta Crystallographica Section D Biological Crystallography, Vol. 60, Issue 12, p. 2126-2132 https://doi.org/10.1107/S0907444904019158	journal	November 2004
Crystal structure of hypothetical protein TTHB192 from Thermus thermophilus HB8 reveals a new protein family with an RNA recognition motif-like domain Ebihara, Akio; Yao, Min; Masui, Ryoji Protein Science, Vol. 15, Issue 6 https://doi.org/10.1110/ps.062131106	journal	June 2006
The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression: The RRM domain, a plastic RNA-binding platform Maris, Christophe; Dominguez, Cyril; Allain, Frédéric H. -T. FEBS Journal, Vol. 272, Issue 9 https://doi.org/10.1111/j.1742-4658.2005.04653.x	journal	April 2005
CRISPR Provides Acquired Resistance Against Viruses in Prokaryotes Barrangou, R.; Fremaux, C.; Deveau, H. Science, Vol. 315, Issue 5819 https://doi.org/10.1126/science.1138140	journal	March 2007
Virus Population Dynamics and Acquired Virus Resistance in Natural Microbial Communities Andersson, A. F.; Banfield, J. F. Science, Vol. 320, Issue 5879 https://doi.org/10.1126/science.1157358	journal	May 2008
Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes Brouns, S. J. J.; Jore, M. M.; Lundgren, M. Science, Vol. 321, Issue 5891, p. 960-964 https://doi.org/10.1126/science.1159689	journal	August 2008
CRISPR Interference Limits Horizontal Gene Transfer in Staphylococci by Targeting DNA Marraffini, Luciano A.; Sontheimer, Erik J. Science, Vol. 322, Issue 5909 https://doi.org/10.1126/science.1165771	journal	December 2008
CRISPR/Cas, the Immune System of Bacteria and Archaea Horvath, Philippe; Barrangou, Rodolphe Science, Vol. 327, Issue 5962 https://doi.org/10.1126/science.1179555	journal	January 2010
Sequence- and Structure-Specific RNA Processing by a CRISPR Endonuclease Haurwitz, R. E.; Jinek, M.; Wiedenheft, B. Science, Vol. 329, Issue 5997, p. 1355-1358 https://doi.org/10.1126/science.1192272	journal	September 2010
Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples Snyder, J. C.; Bateson, M. M.; Lavin, M. Applied and Environmental Microbiology, Vol. 76, Issue 21 https://doi.org/10.1128/AEM.01109-10	journal	September 2010
The CRISPRdb database and tools to display CRISPRs and to generate dictionaries of spacers and repeats Grissa, Ibtissem; Vergnaud, Gilles; Pourcel, Christine BMC Bioinformatics, Vol. 8, Issue 1 https://doi.org/10.1186/1471-2105-8-172	journal	January 2007
Evolutionary conservation of sequence and secondary structures in CRISPR repeats Kunin, Victor; Sorek, Rotem; Hugenholtz, Philip Genome Biology, Vol. 8, Issue 4 https://doi.org/10.1186/gb-2007-8-4-r61	journal	January 2007
Binding and cleavage of CRISPR RNA by Cas6 Carte, J.; Pfister, N. T.; Compton, M. M. RNA, Vol. 16, Issue 11 https://doi.org/10.1261/rna.2230110	journal	September 2010
A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes Haft, Daniel H.; Selengut, Jeremy; Mongodin, Emmanuel F. PLoS Computational Biology, Vol. 1, Issue 6 https://doi.org/10.1371/journal.pcbi.0010060	journal	January 2005
Germ Warfare in a Microbial Mat Community: CRISPRs Provide Insights into the Co-Evolution of Host and Viral Genomes Heidelberg, John F.; Nelson, William C.; Schoenfeld, Thomas PLoS ONE, Vol. 4, Issue 1 https://doi.org/10.1371/journal.pone.0004169	journal	January 2009

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