A New Class of Arabidopsis Constitutive Photomorphogenic Genes Involved in Regulating Cotyledon Development.
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journal
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March 1993 |
Multiple sequence alignment with the Clustal series of programs
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July 2003 |
FLOWERING LOCUS C (FLC) regulates development pathways throughout the life cycle of Arabidopsis
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April 2011 |
Model-based Analysis of ChIP-Seq (MACS)
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January 2008 |
Ethylene in vegetative development: a tale with a riddle: Tansley review
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March 2012 |
Genome-Wide Insertional Mutagenesis of Arabidopsis thaliana
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August 2003 |
Direct transcriptional control of the Arabidopsis immune receptor FLS2 by the ethylene-dependent transcription factors EIN3 and EIL1
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journal
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July 2010 |
Variation in Homeodomain DNA Binding Revealed by High-Resolution Analysis of Sequence Preferences
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June 2008 |
Arabidopsis Seedling Growth Response and Recovery to Ethylene. A Kinetic Analysis
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journal
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October 2004 |
Negative Autoregulation Speeds the Response Times of Transcription Networks
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journal
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November 2002 |
Design and analysis of ChIP-seq experiments for DNA-binding proteins
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journal
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November 2008 |
Sequence specificity is obtained from the majority of modular C2H2 zinc-finger arrays
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February 2011 |
Ethylene inhibits lateral root development, increases IAA transport and expression of PIN3 and PIN7 auxin efflux carriers
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July 2011 |
Dynamic and complex transcription factor binding during an inducible response in yeast
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June 2009 |
Feedback regulation of EGFR signalling: decision making by early and delayed loops
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January 2011 |
Integration of Brassinosteroid Signal Transduction with the Transcription Network for Plant Growth Regulation in Arabidopsis
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November 2010 |
Derepression of ethylene-stabilized transcription factors (EIN3/EIL1) mediates jasmonate and ethylene signaling synergy in Arabidopsis
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July 2011 |
Profiling DNA methylation patterns using genomic tiling microarrays
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March 2005 |
Impulse Control: Temporal Dynamics in Gene Transcription
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March 2011 |
The SOX2 response program in glioblastoma multiforme: an integrated ChIP-seq, expression microarray, and microRNA analysis
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journal
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January 2011 |
Genome-wide protein–DNA binding dynamics suggest a molecular clutch for transcription factor function
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journal
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April 2012 |
HOOKLESS1, an Ethylene Response Gene, Is Required for Differential Cell Elongation in the Arabidopsis Hypocotyl
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April 1996 |
A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana: Brassinosteroid transcriptional network
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January 2011 |
Nascent-Seq reveals novel features of mouse circadian transcriptional regulation
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November 2012 |
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls
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January 2009 |
Short-Term Growth Responses to Ethylene in Arabidopsis Seedlings Are EIN3/EIL1 Independent
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October 2004 |
Genome-wide transcription factor binding: beyond direct target regulation
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journal
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April 2011 |
LEAFY Target Genes Reveal Floral Regulatory Logic, cis Motifs, and a Link to Biotic Stimulus Response
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journal
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April 2011 |
Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants
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journal
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July 2006 |
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
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July 1999 |
Evidence for Network Evolution in an Arabidopsis Interactome Map
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July 2011 |
Orchestration of Floral Initiation by APETALA1
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journal
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April 2010 |
Plant Responses to Ethylene Gas Are Mediated by SCFEBF1/EBF2-Dependent Proteolysis of EIN3 Transcription Factor
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December 2003 |
Arabidopsis Hormone Database: a comprehensive genetic and phenotypic information database for plant hormone research in Arabidopsis
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November 2008 |
Ethylene signaling: new levels of complexity and regulation
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October 2008 |
Quantitative analysis demonstrates most transcription factors require only simple models of specificity
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June 2011 |
Diversity and Complexity in DNA Recognition by Transcription Factors
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journal
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May 2009 |
The Regulation of Aging and Longevity: A New and Complex Role of p53
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April 2011 |
Statistical mechanical modeling of genome-wide transcription factor occupancy data by MatrixREDUCE
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journal
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July 2006 |
Convergence of Signaling Pathways in the Control of Differential Cell Growth in Arabidopsis
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journal
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August 2004 |
Nuclear events in ethylene signaling: a transcriptional cascade mediated by ETHYLENE-INSENSITIVE3 and ETHYLENE-RESPONSE-FACTOR1
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December 1998 |
Five components of the ethylene-response pathway identified in a screen for weak ethylene-insensitive mutants in Arabidopsis
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journal
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February 2003 |
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
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journal
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November 2010 |
ETHYLENE INSENSITIVE3 and ETHYLENE INSENSITIVE3-LIKE1 Repress SALICYLIC ACID INDUCTION DEFICIENT2 Expression to Negatively Regulate Plant Innate Immunity in Arabidopsis
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journal
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August 2009 |
Auxin, Ethylene and Brassinosteroids: Tripartite Control of Growth in the Arabidopsis Hypocotyl
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journal
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June 2005 |
A new Generation of Homology Search Tools Based on Probabilistic Inference
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conference
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March 2012 |
Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks
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journal
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November 2003 |
Orchestration of the Floral Transition and Floral Development in Arabidopsis by the Bifunctional Transcription Factor APETALA2
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journal
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July 2010 |
Localization of the Raf-like Kinase CTR1 to the Endoplasmic Reticulum of Arabidopsis through Participation in Ethylene Receptor Signaling Complexes
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journal
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June 2003 |
Cloning and DNA-binding properties of a tobacco Ethylene-Insensitive3 (EIN3) homolog
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journal
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February 2000 |
The embryonic leaf identity gene FUSCA3 regulates vegetative phase transitions by negatively modulating ethylene-regulated gene expression in Arabidopsis
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journal
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January 2012 |
EIN3/EIL1 cooperate with PIF1 to prevent photo-oxidation and to promote greening of Arabidopsis seedlings
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journal
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November 2009 |
Reconstructing dynamic regulatory maps
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journal
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January 2007 |
Target Genes of the MADS Transcription Factor SEPALLATA3: Integration of Developmental and Hormonal Pathways in the Arabidopsis Flower
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journal
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April 2009 |
Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors
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journal
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March 2009 |
Characterization of SOC1’s Central Role in Flowering by the Identification of Its Upstream and Downstream Regulators
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July 2012 |
MicroRNA-Mediated Feedback and Feedforward Loops Are Recurrent Network Motifs in Mammals
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June 2007 |
Involvement of HLS1 in Sugar and Auxin Signaling in Arabidopsis Leaves
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journal
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December 2006 |
Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities
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journal
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September 2006 |
The Pfam protein families database
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journal
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November 2009 |
BiNGO: a Cytoscape plugin to assess overrepresentation of Gene Ontology categories in Biological Networks
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June 2005 |
STAMP: a web tool for exploring DNA-binding motif similarities
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May 2007 |
Different Plant Hormones Regulate Similar Processes through Largely Nonoverlapping Transcriptional Responses
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August 2006 |
A module of negative feedback regulators defines growth factor signaling
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journal
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February 2007 |
Changes in 5S rDNA Chromatin Organization and Transcription during Heterochromatin Establishment in Arabidopsis
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journal
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November 2003 |
Arabidopsis auxin-resistance gene AXR1 encodes a protein related to ubiquitin-activating enzyme E1
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journal
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July 1993 |
Highly Integrated Single-Base Resolution Maps of the Epigenome in Arabidopsis
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journal
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May 2008 |
Combinatorial binding predicts spatio-temporal cis-regulatory activity
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journal
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November 2009 |
Improved detection of DNA motifs using a self-organized clustering of familial binding profiles
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journal
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June 2005 |
Activation of the Ethylene Gas Response Pathway in Arabidopsis by the Nuclear Protein ETHYLENE-INSENSITIVE3 and Related Proteins
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journal
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June 1997 |
Ethylene signaling in Arabidopsis involves feedback regulation via the elaborate control of EBF2 expression by EIN3
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journal
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September 2008 |
Cell Identity Regulators Link Development and Stress Responses in the Arabidopsis Root
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journal
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October 2011 |
Temporal and Spatial Changes in Transcription Factor Binding and Histone Modifications at the Steroidogenic Acute Regulatory Protein ( StAR ) Locus Associated with StAR Transcription
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journal
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April 2004 |