Disentangling Mechanisms That Mediate the Balance Between Stochastic and Deterministic Processes in Microbial Succession

Dini-Andreote, Francisco; Stegen, James C.; van Elsas, Jan D.; Falcao Salles, Joana

doi:10.1073/pnas.1414261112

Disentangling Mechanisms That Mediate the Balance Between Stochastic and Deterministic Processes in Microbial Succession

Journal Article · Tue Mar 17 00:00:00 EDT 2015 · Proceedings of the National Academy of Sciences of the United States of America, 112(11):E1326-E1332

DOI:https://doi.org/10.1073/pnas.1414261112· OSTI ID:1182871

Dini-Andreote, Francisco; Stegen, James C.; van Elsas, Jan D.; Falcao Salles, Joana

Despite growing recognition that deterministic and stochastic factors simultaneously influence bacterial communities, little is known about mechanisms shifting their relative importance. To better understand underlying mechanisms, we developed a conceptual model linking ecosystem development during primary succession to shifts in the stochastic/deterministic balance. To evaluate the conceptual model we coupled spatiotemporal data on soil bacterial communities with environmental conditions spanning 105 years of salt marsh development. At the local scale there was a progression from stochasticity to determinism due to Na accumulation with increasing ecosystem age, supporting a main element of the conceptual model. At the regional-scale, soil organic matter (SOM) governed the relative influence of stochasticity and the type of deterministic ecological selection, suggesting scale-dependency in how deterministic ecological selection is imposed. Analysis of a new ecological simulation model supported these conceptual inferences. Looking forward, we propose an extended conceptual model that integrates primary and secondary succession in microbial systems.

View Accepted Manuscript (DOE)

Research Organization:: Pacific Northwest National Laboratory (PNNL), Richland, WA (US)

Sponsoring Organization:: USDOE

Grant/Contract Number:: AC05-76RL01830

OSTI ID:: 1182871

Report Number(s):: PNNL-SA-105908

Journal Information:: Proceedings of the National Academy of Sciences of the United States of America, 112(11):E1326-E1332, Journal Name: Proceedings of the National Academy of Sciences of the United States of America, 112(11):E1326-E1332

Country of Publication:: United States

Language:: English

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Additional file 4 of Contrast diversity patterns and processes of microbial community assembly in a river-lake continuum across a catchment scale in northwestern China Tang, Xiangming; Xie, Guijuan; Shao, Keqiang figshare https://doi.org/10.6084/m9.figshare.12197373	dataset	January 2020
Additional file 2 of Deterministic transition of enterotypes shapes the infant gut microbiome at an early age Xiao, Liwen; Wang, Jinfeng; Zheng, Jiayong figshare https://doi.org/10.6084/m9.figshare.16435885	dataset	January 2021
Additional file 10 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590624.v1	dataset	January 2021
Additional file 11 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590627.v1	dataset	January 2021
Additional file 12 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590630.v1	dataset	January 2021
Additional file 13 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590633	dataset	January 2021
Additional file 14 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590636	dataset	January 2021
Additional file 15 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590639.v1	dataset	January 2021
Additional file 2 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590648.v1	image	January 2021
Additional file 3 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590651	image	January 2021
Additional file 4 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590654	image	January 2021
Additional file 5 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590657	image	January 2021
Additional file 6 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590663	image	January 2021
Additional file 7 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590666.v1	dataset	January 2021
Additional file 8 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590669.v1	dataset	January 2021
Additional file 9 of Strategies and Structure Feature of the Aboveground and Belowground Microbial Community Respond to Drought in Wild Rice (Oryza longistaminata) Xie, Jian; Wang, Xiaoqing; Xu, Jiawang figshare https://doi.org/10.6084/m9.figshare.16590672	dataset	January 2021
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Contrast diversity patterns and processes of microbial community assembly in a river-lake continuum across a catchment scale in northwestern China Tang, Xiangming; Xie, Guijuan; Shao, Keqiang Environmental Microbiome, Vol. 15, Issue 1 https://doi.org/10.1186/s40793-020-00356-9	journal	April 2020
Maize phyllosphere microbial community niche development across stages of host leaf growth Manching, Heather C.; Carlson, Kara; Kosowsky, Sean F1000Research, Vol. 6 https://doi.org/10.12688/f1000research.12490.1	journal	January 2017
Maize Phyllosphere Microbial Community Niche Development Across Stages of Host Leaf Growth Manching, Heather C.; Carlson, Kara; Kosowsky, Sean F1000Research, Vol. 6 https://doi.org/10.12688/f1000research.12490.2	journal	January 2017
Maize Phyllosphere Microbial Community Niche Development Across Stages of Host Leaf Growth Manching, Heather C.; Carlson, Kara; Kosowsky, Sean F1000Research, Vol. 6 https://doi.org/10.12688/f1000research.12490.3	journal	January 2017
Contribution of neutral processes to the assembly of gut microbial communities in the zebrafish over host development Zac, Stephens, W.; Sandi, Wong,; Karen, Guillemin, The University of North Carolina at Chapel Hill University Libraries https://doi.org/10.17615/vxyb-pb50	text	January 2016
Distinct Taxonomic and Functional Profiles of the Microbiome Associated With Different Soil Horizons of a Moist Tussock Tundra in Alaska Tripathi, Binu M.; Kim1, Hye Min; Jung, Ji Young Frontiers in Microbiology, Vol. 10 https://doi.org/10.3389/fmicb.2019.01442	journal	June 2019
Multiple, Compounding Disturbances in a Forest Ecosystem: Fire Increases Susceptibility of Soil Edaphic Properties, Bacterial Community Structure, and Function to Change with Extreme Precipitation Event Knelman, Joseph; Schmidt, Steve; Garayburu-Caruso, Vanessa Soil Systems, Vol. 3, Issue 2 https://doi.org/10.3390/soilsystems3020040	journal	June 2019
Community Assembly Mechanisms Underlying the Core and Random Bacterioplankton and Microeukaryotes in a River–Reservoir System Isabwe, Alain; Ren, Kexin; Wang, Yongming Water, Vol. 11, Issue 6 https://doi.org/10.3390/w11061127	journal	May 2019
Microbial interactions lead to rapid micro-scale successions on model marine particles Datta, Manoshi S.; Sliwerska, Elzbieta; Gore, Jeff ETH Zurich https://doi.org/10.3929/ethz-b-000117915	text	January 2016

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