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Title: Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)

Journal Article · · Standards in Genomic Sciences
DOI:https://doi.org/10.4056/sigs.2665915· OSTI ID:1182759
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  1. 1DOE Joint Genome Institute, Walnut Creek, California, USA
  2. 2Los Alamos National Laboratory, Bioscience Division, Los Alamos, New Mexico, USA
  3. 3Biological Data Management and Technology Center, Lawrence Berkeley National Laboratory, Berkeley, California, USA
  4. 4Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA
  5. 6Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany
  6. 5HZI – Helmholtz Centre for Infection Research, Braunschweig, Germany
  7. 7University of California Davis Genome Center, Davis, California, USA
  8. 8Australian Centre for Ecogenomics, School of Chemistry and Molecular Biosciences, The University of Queensland, Brisbane, Australia
+ Show Author Affiliations

Research Organization:
Lawrence Berkeley National Laboratory (LBNL), Berkeley, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC)
DOE Contract Number:
DE-AC02-05CH11231
OSTI ID:
1182759
Report Number(s):
LBNL-5841E
Journal Information:
Standards in Genomic Sciences, Vol. 6, Issue 2; ISSN 1944-3277
Publisher:
BioMed Central
Country of Publication:
United States
Language:
English

References (23)

Thermodesulfatator indicus gen. nov., sp. nov., a novel thermophilic chemolithoautotrophic sulfate-reducing bacterium isolated from the Central Indian Ridge journal January 2004
Thermodesulfatator atlanticus sp. nov., a thermophilic, chemolithoautotrophic, sulfate-reducing bacterium isolated from a Mid-Atlantic Ridge hydrothermal vent journal January 2010
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An algorithm for suffix stripping journal March 1980
Multiple sequence alignment using partial order graphs journal March 2002
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis journal April 2000
A Rapid Bootstrap Algorithm for the RAxML Web Servers journal October 2008
An empirical test of the midpoint rooting method: A TEST FOR THE MIDPOINT ROOTING METHOD journal December 2007
The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata journal November 2009
The minimum information about a genome sequence (MIGS) specification journal May 2008
Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya. journal June 1990
Gene Ontology: tool for the unification of biology journal May 2000
En route to a genome-based classification of Archaea and Bacteria? journal June 2010
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea journal December 2009
The DNA Bank Network: The Start from a German Initiative journal March 2011
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs journal February 2008
Prodigal: prokaryotic gene recognition and translation initiation site identification journal March 2010
GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes journal May 2010
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence journal March 1997
RNAmmer: consistent and rapid annotation of ribosomal RNA genes journal April 2007
Rfam: an RNA family database journal January 2003
Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen journal January 2001
Improved Prediction of Signal Peptides: SignalP 3.0 journal July 2004

Cited By (5)

Shifting the metallocentric molybdoenzyme paradigm: the importance of pyranopterin coordination journal September 2014
Molecular signatures for the phylum Aquificae and its different clades: proposal for division of the phylum Aquificae into the emended order Aquificales, containing the families Aquificaceae and Hydrogenothermaceae, and a new order Desulfurobacteriales ord. nov., containing the family Desulfurobacteriaceae journal June 2013
A genomic approach to the cryptic secondary metabolome of the anaerobic world journal January 2013
Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane : The partner bacterium in thermophilic methanotrophy journal April 2016
Pan-genome analyses identify lineage- and niche-specific markers of evolution and adaptation in Epsilonproteobacteria journal March 2014

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