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Title: Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations

Abstract

Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006.

Authors:
 [1];  [1];  [2];  [3];  [4];  [5];  [6];  [6];  [7];  [7];  [8];  [7];  [8];  [8];  [8];  [8];  [8];  [8];  [9];  [8] more »;  [8];  [7];  [8];  [8];  [8];  [8];  [8];  [8];  [8];  [8];  [8];  [8];  [8];  [7] « less
  1. Miami University, Oxford, OH
  2. Netherlands Institute of Ecology (NIOO-KNAW)
  3. Chuo University, Tokyo, Japan
  4. University of California, Riverside
  5. University of Louisville, Louisville
  6. Oregon State University
  7. Los Alamos National Laboratory (LANL)
  8. U.S. Department of Energy, Joint Genome Institute
  9. ORNL
Publication Date:
Research Org.:
Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
Sponsoring Org.:
Work for Others (WFO)
OSTI Identifier:
1068094
DOE Contract Number:
DE-AC05-00OR22725
Resource Type:
Journal Article
Resource Relation:
Journal Name: Standards in Genomic Sciences; Journal Volume: 7; Journal Issue: 3
Country of Publication:
United States
Language:
English
Subject:
Nitrosomonas; Ammonia-oxidizing bacteria; Ammonia oxidation; nitrification; nitrogen cycle; freshwater; oligotrophic

Citation Formats

Bollmann, Annette, Sedlacek, Christopher J, Laanbroek, Hendrikus J, Suwa, Yuichi, Stein, Lisa Y, Klotz, Martin G, Arp, D J, Sayavedra-Soto, LA, Lu, Megan, Bruce, David, Detter, J. Chris, Tapia, Roxanne, Han, James, Woyke, Tanja, Lucas, Susan, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam L, Huntemann, Marcel, Deshpande, Shweta, Han, Cliff, Chen, Amy, Kyrpides, Nikos C, Mavromatis, K, Markowitz, Victor, Szeto, Ernest, Ivanova, N, Mikhailova, Natalia, Pagani, Ioanna, Pati, Amrita, Peters, Lin, Ovchinnikova, Galina, and Goodwin, Lynne A. Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. United States: N. p., 2013. Web.
Bollmann, Annette, Sedlacek, Christopher J, Laanbroek, Hendrikus J, Suwa, Yuichi, Stein, Lisa Y, Klotz, Martin G, Arp, D J, Sayavedra-Soto, LA, Lu, Megan, Bruce, David, Detter, J. Chris, Tapia, Roxanne, Han, James, Woyke, Tanja, Lucas, Susan, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam L, Huntemann, Marcel, Deshpande, Shweta, Han, Cliff, Chen, Amy, Kyrpides, Nikos C, Mavromatis, K, Markowitz, Victor, Szeto, Ernest, Ivanova, N, Mikhailova, Natalia, Pagani, Ioanna, Pati, Amrita, Peters, Lin, Ovchinnikova, Galina, & Goodwin, Lynne A. Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations. United States.
Bollmann, Annette, Sedlacek, Christopher J, Laanbroek, Hendrikus J, Suwa, Yuichi, Stein, Lisa Y, Klotz, Martin G, Arp, D J, Sayavedra-Soto, LA, Lu, Megan, Bruce, David, Detter, J. Chris, Tapia, Roxanne, Han, James, Woyke, Tanja, Lucas, Susan, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam L, Huntemann, Marcel, Deshpande, Shweta, Han, Cliff, Chen, Amy, Kyrpides, Nikos C, Mavromatis, K, Markowitz, Victor, Szeto, Ernest, Ivanova, N, Mikhailova, Natalia, Pagani, Ioanna, Pati, Amrita, Peters, Lin, Ovchinnikova, Galina, and Goodwin, Lynne A. Tue . "Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations". United States. doi:.
@article{osti_1068094,
title = {Complete genome sequence of Nitrosomonas sp. Is79, an ammonia oxidizing bacterium adapted to low ammonium concentrations},
author = {Bollmann, Annette and Sedlacek, Christopher J and Laanbroek, Hendrikus J and Suwa, Yuichi and Stein, Lisa Y and Klotz, Martin G and Arp, D J and Sayavedra-Soto, LA and Lu, Megan and Bruce, David and Detter, J. Chris and Tapia, Roxanne and Han, James and Woyke, Tanja and Lucas, Susan and Pitluck, Sam and Pennacchio, Len and Nolan, Matt and Land, Miriam L and Huntemann, Marcel and Deshpande, Shweta and Han, Cliff and Chen, Amy and Kyrpides, Nikos C and Mavromatis, K and Markowitz, Victor and Szeto, Ernest and Ivanova, N and Mikhailova, Natalia and Pagani, Ioanna and Pati, Amrita and Peters, Lin and Ovchinnikova, Galina and Goodwin, Lynne A.},
abstractNote = {Nitrosomonas sp. Is79 is a chemolithoautotrophic ammonia-oxidizing bacterium that belongs to the family Nitrosomonadaceae within the phylum Proteobacteria. Ammonia oxidation is the first step of nitrification, an important process in the global nitrogen cycle ultimately resulting in the production of nitrate. Nitrosomonas sp. Is79 is an ammonia oxidizer of high interest because it is adapted to low ammonium and can be found in freshwater environments around the world. The 3,783,444-bp chromosome with a total of 3,553 protein coding genes and 44 RNA genes was sequenced by the DOE-Joint Genome Institute Program CSP 2006.},
doi = {},
journal = {Standards in Genomic Sciences},
number = 3,
volume = 7,
place = {United States},
year = {Tue Jan 01 00:00:00 EST 2013},
month = {Tue Jan 01 00:00:00 EST 2013}
}