Complete genome sequence of Paludibacter propionicigenes type strain (WB4T)

Journal Article · Sat Jan 01 04:00:00 EST 2011 · Standards in Genomic Sciences

DOI:https://doi.org/10.4056/sigs.1503846· OSTI ID:1029228

Gronow, Sabine ^[1]; Munk, Christine ^[2]; Lapidus, Alla L ^[2]; Nolan, Matt ^[2]; Lucas, Susan ^[2]; Hammon, Nancy ^[2]; Deshpande, Shweta ^[2]; Cheng, Jan-Fang ^[2]; Tapia, Roxanne ^[3]; Han, Cliff ^[3]; Goodwin, Lynne A ^[3]; Pitluck, Sam ^[2]; Liolios, Konstantinos ^[2]; Ivanova, N ^[4]; Mavromatis, K ^[4]; Mikhailova, Natalia ^[4]; Pati, Amrita ^[4]; Chen, Amy ^[2]; Palaniappan, Krishna ^[2]; Land, Miriam L ^[5] ; Hauser, Loren John ^[5]; Chang, Yun-Juan ^[5]; Jeffries, Cynthia ^[6]; Brambilla, Evelyne-Marie ^[1]; Rohde, Manfred ^[7]; Goker, Markus ^[1]; Detter, J Chris ^[2]; Woyke, Tanja ^[2]; Bristow, James ^[2]; Eisen, Jonathan ^[2]; Markowitz, Victor ^[2]; Hugenholtz, Philip ^[4]; Kyrpides, Nikos C ^[2]; Klenk, Hans-Peter ^[1]

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1. DSMZ - German Collection of Microorganisms and Cell Cultures GmbH, Braunschweig, Germany
2. Joint Genome Institute, Walnut Creek, California
3. Los Alamos National Laboratory (LANL)
4. U.S. Department of Energy, Joint Genome Institute
5. ORNL
6. Oak Ridge National Laboratory (ORNL)
7. HZI - Helmholtz Centre for Infection Research, Braunschweig, Germany

Paludibacter propionicigenes Ueki et al. 2006 is the type species of the genus Paludibacter, which belongs to the family Porphyromonadaceae. The species is of interest because of the position it occupies in the tree of life where it can be found in close proximity to members of the genus Dysgonomonas. This is the first completed genome sequence of a member of the genus Paludibacter and the third sequence from the family Porphyromonadaceae. The 3,685,504 bp long genome with its 3,054 protein-coding and 64 RNA genes consists of one circular chromosome and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

• Research Organization: Oak Ridge National Laboratory (ORNL)
• Sponsoring Organization: ORNL work for others
• DOE Contract Number: AC05-00OR22725
• OSTI ID: 1029228
• Journal Information: Standards in Genomic Sciences, Journal Name: Standards in Genomic Sciences Journal Issue: 1 Vol. 4; ISSN 1944-3277
• Country of Publication: United States
• Language: English

Related Subjects

59 BASIC BIOLOGICAL SCIENCES
60 APPLIED LIFE SCIENCES
BACTERIA
CHROMOSOMES
GEBA
GENES
Gram-negative
Porphyromonadaceae
RNA
STRAINS
anoxic rice field soil
chemoorganotrophic
mesophilic
nonmotile
strictly anaerobic