Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods

Thompson, David N; Thompson, Vicki S; Schaller, Kastli D; Apel, William A; Lacey, Jeffrey A; Reed, David W

Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods

Patent · Tue Apr 12 04:00:00 EDT 2011

OSTI ID:1016744

Thompson, David N ^[1]; Thompson, Vicki S ^[1]; Schaller, Kastli D ^[2]; Apel, William A ^[3]; Lacey, Jeffrey A ^[1]; Reed, David W ^[1]

Idaho Falls, ID
Ammon, ID
Jackson, WY

Isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof are provided. Further provided are methods of at least partially degrading xylotriose and/or xylobiose using isolated and/or purified polypeptides and nucleic acid sequences encoding polypeptides from Alicyclobacillus acidocaldarius and variations thereof.

View Patent

Research Organization:: Bechtel BWXT Idaho, LLC (Idaho Falls, ID)

Sponsoring Organization:: USDOE

DOE Contract Number:: AC07-99ID13727

Assignee:: Battelle Energy Alliance, LLC (Idaho Falls, ID)

Patent Number(s):: 7,923,234

Application Number:: US Patent Application 12/321,636

OSTI ID:: 1016744

Country of Publication:: United States

Language:: English

References (47)

Thermoacidophilic Microorganisms and their Novel Biocatalysts Bertoldo, C.; Dock, C.; Antranikian, G. Engineering in Life Sciences, Vol. 4, Issue 6, p. 521-532 https://doi.org/10.1002/elsc.200402155	journal	December 2004
Bacterial glycoproteins: Functions, biosynthesis and applications Upreti, Raj K.; Kumar, Manoj; Shankar, V. PROTEOMICS, Vol. 3, Issue 4, p. 363-379 https://doi.org/10.1002/pmic.200390052	journal	April 2003
Single molecule detection of RNA reporter probes by amplification with Qβ replicase Burg, Lawrence J.; Juffras, Ann Marie; Wu, Ye Molecular and Cellular Probes, Vol. 10, Issue 4, p. 257-271 https://doi.org/10.1006/mcpr.1996.0035	journal	August 1996
Polymerase chain reaction Erlich, Henry A. Journal of Clinical Immunology, Vol. 9, Issue 6, p. 437-447 https://doi.org/10.1007/BF00918012	journal	November 1989
Gene cloning, sequencing, and characterization of a family 9 endoglucanase (CelA) with an unusual pattern of activity from the thermoacidophile Alicyclobacillus acidocaldarius ATCC27009 K., Eckert; F., Zielinski; Leggio, L. Lo Applied Microbiology and Biotechnology, Vol. 60, Issue 4, p. 428-436 https://doi.org/10.1007/s00253-002-1131-4	journal	December 2002
Cloning and transcriptional analysis of the Thermoanaerobacter ethanolicus strain 39E maltose ABC transport system Jones, Chris R.; Ray, Myrna; Strobel, Herbert J. Extremophiles, Vol. 6, Issue 4, p. 291-299 https://doi.org/10.1007/s00792-001-0256-1	journal	March 2002
Analytical strategies for the use of DNA probes Matthews, Jayne A.; Kricka, Larry J. Analytical Biochemistry, Vol. 169, Issue 1, p. 1-25 https://doi.org/10.1016/0003-2697(88)90251-5	journal	February 1988
Autocatalytic replication of a recombinant RNA Miele, Eleanor A.; Mills, Donald R.; Kramer, Fred Russell Journal of Molecular Biology, Vol. 171, Issue 3, p. 281-295 https://doi.org/10.1016/0022-2836(83)90094-3	journal	December 1983
Recent advances in heterologous gene expression in Escherichia coli Olins, Peter O.; Lee, Stephen C. Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 520-525 https://doi.org/10.1016/0958-1669(93)90071-4	journal	October 1993
Yeast systems for the expression of heterologous gene products Buckholz, Richard G. Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 538-542 https://doi.org/10.1016/0958-1669(93)90074-7	journal	October 1993
Current applications of COS cell based transient expression systems Edwards, Caroline P.; Aruffo, Alejandro Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 558-563 https://doi.org/10.1016/0958-1669(93)90077-A	journal	October 1993
Baculovirus systems for the expression of human gene products Luckow, Verne A. Current Opinion in Biotechnology, Vol. 4, Issue 5, p. 564-572 https://doi.org/10.1016/0958-1669(93)90078-B	journal	October 1993
Chapter 9 - Import of Solutes by ABC Transporters - The Maltose and Other Systems Schneider, Erwin ABC Proteins, p. 157-185 https://doi.org/10.1016/B978-012352551-2/50010-X	book	December 2002
Biochemistry and genetics of microbial xylanases Jeffries, Thomas W. Current Opinion in Biotechnology, Vol. 7, Issue 3, p. 337-342 https://doi.org/10.1016/S0958-1669(96)80041-3	journal	June 1996
The acid hydrolysis of sugarcane bagasse hemicellulose to produce xylose, arabinose, glucose and other products Lavarack, B. P.; Griffin, G. J.; Rodman, D. Biomass and Bioenergy, Vol. 23, Issue 5, p. 367-380 https://doi.org/10.1016/S0961-9534(02)00066-1	journal	November 2002
Ethanol production from biomass: technology and commercialization status Mielenz, Jonathan R. Current Opinion in Microbiology, Vol. 4, Issue 3, p. 324-329 https://doi.org/10.1016/S1369-5274(00)00211-3	journal	June 2001
Microbial hemicellulases Shallom, Dalia; Shoham, Yuval Current Opinion in Microbiology, Vol. 6, Issue 3, p. 219-228 https://doi.org/10.1016/S1369-5274(03)00056-0	journal	June 2003
Functional reconstitution of a maltose ATP-binding cassette transporter from the thermoacidophilic gram-positive bacterium Alicyclobacillus acidocaldarius Scheffel, Frank; Fleischer, Rebecca; Schneider, Erwin Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1656, Issue 1, p. 57-65 https://doi.org/10.1016/j.bbabio.2004.01.005	journal	May 2004
Isolation and characterization of a new family 42 β-galactosidase from the thermoacidophilic bacterium Alicyclobacillus acidocaldarius: Identification of the active site residues Di Lauro, Barbara; Strazzulli, Andrea; Perugino, Giuseppe Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, Vol. 1784, Issue 2, p. 292-301 https://doi.org/10.1016/j.bbapap.2007.10.013	journal	February 2008
Ethanol from lignocellulosic biomass techno-economic performance in short-, middle- and long-term Hamelinck, Carlo N; Hooijdonk, Geertje van; Faaij, André PC Biomass and Bioenergy, Vol. 28, Issue 4, p. 384-410 https://doi.org/10.1016/j.biombioe.2004.09.002	journal	April 2005
Xylanases, xylanase families and extremophilic xylanases Collins, Tony; Gerday, Charles; Feller, Georges FEMS Microbiology Reviews, Vol. 29, Issue 1, p. 3-23 https://doi.org/10.1016/j.femsre.2004.06.005	journal	January 2005
X-ray Structures of the Maltose–Maltodextrin-binding Protein of the Thermoacidophilic Bacterium Alicyclobacillus acidocaldarius Provide Insight into Acid Stability of Proteins Schäfer, Karsten; Magnusson, Ulrika; Scheffel, Frank Journal of Molecular Biology, Vol. 335, Issue 1, p. 261-274 https://doi.org/10.1016/j.jmb.2003.10.042	journal	January 2004
Prediction of protein function from protein sequence and structure Whisstock, James C.; Lesk, Arthur M. Quarterly Reviews of Biophysics, Vol. 36, Issue 3, p. 307-340 https://doi.org/10.1017/S0033583503003901	journal	January 1999
Conversion of a β-Ketoacyl Synthase to a Malonyl Decarboxylase by Replacement of the Active-Site Cysteine with Glutamine Witkowski, Andrzej; Joshi, Anil K.; Lindqvist, Ylva Biochemistry, Vol. 38, Issue 36, p. 11643-11650 https://doi.org/10.1021/bi990993h	journal	September 1999
Glycosylation Engineering: Controlling personalities tame wild sugars on proteins and natural products Borman, STU Chemical & Engineering News Archive, Vol. 84, Issue 36, p. 13-22 https://doi.org/10.1021/cen-v084n036.p013	journal	September 2006
The Effect of Flow Rate of Compressed Hot Water on Xylan, Lignin, and Total Mass Removal from Corn Stover Liu, Chaogang; Wyman, Charles E. Industrial & Engineering Chemistry Research, Vol. 42, Issue 21, p. 5409-5416 https://doi.org/10.1021/ie030458k	journal	September 2003
The Synthesis of Bovine Insulin by the Solid Phase Method Marglin, B.; Merrifield, R. B. Journal of the American Chemical Society, Vol. 88, Issue 21, p. 5051-5052 https://doi.org/10.1021/ja00973a068	journal	November 1966
Lignocellulose biodegradation: Fundamentals and applications Malherbe, S.; Cloete, T. E. Reviews in Environmental Science and Bio/Technology, Vol. 1, Issue 2, p. 105-114 https://doi.org/10.1023/A:1020858910646	journal	June 2002
Continuous cultures of fused cells secreting antibody of predefined specificity Köhler, G.; Milstein, C. Nature, Vol. 256, Issue 5517, p. 495-497 https://doi.org/10.1038/256495a0	journal	August 1975
Immunogenicity and protective efficacy of a tuberculosis DNA vaccine Huygen, Kris; Content, Jean; Denis, Olivier Nature Medicine, Vol. 2, Issue 8, p. 893-898 https://doi.org/10.1038/nm0896-893	journal	August 1996
A thermoacidophilic endoglucanase (CelB) from Alicyclobacillus acidocaldarius displays high sequence similarity to arabinofuranosidases belonging to family 51 of glycoside hydrolases Eckert, Kelvin; Schneider, Erwin European Journal of Biochemistry, Vol. 270, Issue 17, p. 3593-3602 https://doi.org/10.1046/j.1432-1033.2003.03744.x	journal	August 2003
Improved tools for biological sequence comparison. Pearson, W. R.; Lipman, D. J. Proceedings of the National Academy of Sciences, Vol. 85, Issue 8, p. 2444-2448 https://doi.org/10.1073/pnas.85.8.2444	journal	April 1988
Transcription-based amplification system and detection of amplified human immunodeficiency virus type 1 with a bead-based sandwich hybridization format. Kwoh, D. Y.; Davis, G. R.; Whitfield, K. M. Proceedings of the National Academy of Sciences, Vol. 86, Issue 4, p. 1173-1177 https://doi.org/10.1073/pnas.86.4.1173	journal	February 1989
Synthesis of an amplifiable reporter RNA for bioassays Chu, Barbara C. F.; Kramer, Fred Russell; Orgel, Leslie E. Nucleic Acids Research, Vol. 14, Issue 14, p. 5591-5603 https://doi.org/10.1093/nar/14.14.5591	journal	January 1986
A comparison of non-radioisotopic hybridization assay methods using fluorescent, chemiluminescent and enzyme labeled synthetic oligodeoxyribonucleotide probes Urdea, Mickey S.; Warner, Brian D.; Running, Joyce A. Nucleic Acids Research, Vol. 16, Issue 11, p. 4937-4956 https://doi.org/10.1093/nar/16.11.4937	journal	January 1988
Strand displacement amplification—an isothermal, in vitro DNA amplification technique Walker, G. Terrance; Fraiser, Melinda S.; Schram, James L. Nucleic Acids Research, Vol. 20, Issue 7, p. 1691-1696 https://doi.org/10.1093/nar/20.7.1691	journal	January 1992
Temple, W. J., et al. Childhood melanoma Manstein, Carl H. Plastic and Reconstructive Surgery, Vol. 89, Issue 2 https://doi.org/10.1097/00006534-199202000-00093	journal	January 1992
Purification, Properties and Structural Aspects of a Thermoacidophilic alpha-Amylase from Alicyclobacillus Acidocaldarius Atcc 27009 Schwermann, Birgit; Pfau, Karsten; Liliensiek, Birgit European Journal of Biochemistry, Vol. 226, Issue 3, p. 981-991 https://doi.org/10.1111/j.1432-1033.1994.00981.x	journal	December 1994
Catalytic Plasticity of Fatty Acid Modification Enzymes Underlying Chemical Diversity of Plant Lipids Broun, Pierre; Shanklin, John; Whittle, Ed Science, Vol. 282, Issue 5392, p. 1315-1317 https://doi.org/10.1126/science.282.5392.1315	journal	November 1998
Maltose and Maltodextrin Transport in the Thermoacidophilic Gram-Positive Bacterium Alicyclobacillus acidocaldarius Is Mediated by a High-Affinity Transport System That Includes a Maltose Binding Protein Tolerant to Low pH Hülsmann, A.; Lurz, R.; Scheffel, F. Journal of Bacteriology, Vol. 182, Issue 22, p. 6292-6301 https://doi.org/10.1128/JB.182.22.6292-6301.2000	journal	November 2000
Melamine Deaminase and Atrazine Chlorohydrolase: 98 Percent Identical but Functionally Different Seffernick, J. L.; de Souza, M. L.; Sadowsky, M. J. Journal of Bacteriology, Vol. 183, Issue 8, p. 2405-2410 https://doi.org/10.1128/JB.183.8.2405-2410.2001	journal	April 2001
Rapid chemiluminescent nucleic acid assays for detection of TEM-1 beta-lactamase-mediated penicillin resistance in Neisseria gonorrhoeae and other bacteria. Sanchez-Pescador, R.; Stempien, M. S.; Urdea, M. S. Journal of Clinical Microbiology, Vol. 26, Issue 10 https://doi.org/10.1128/JCM.26.10.1934-1938.1988	journal	January 1988
Hyperthermophilic Enzymes: Sources, Uses, and Molecular Mechanisms for Thermostability Vieille, C.; Zeikus, G. J. Microbiology and Molecular Biology Reviews, Vol. 65, Issue 1, p. 1-43 https://doi.org/10.1128/MMBR.65.1.1-43.2001	journal	March 2001
Microbial Cellulose Utilization: Fundamentals and Biotechnology Lynd, L. R.; Weimer, P. J.; van Zyl, W. H. Microbiology and Molecular Biology Reviews, Vol. 66, Issue 3, p. 506-577 https://doi.org/10.1128/MMBR.66.3.506-577.2002	journal	September 2002
Purification and Properties of Acid Stable Xylanases from Aspergillus kawachii Ito, Kiyoshi; Ogasawara, Hironobu; Sugimoto, Takashi Bioscience, Biotechnology, and Biochemistry, Vol. 56, Issue 4, p. 547-550 https://doi.org/10.1271/bbb.56.547	journal	January 1992
Manufacture of Xylose-Based Fermentation Media from Corncobs by Posthydrolysis of Autohydrolysis Liquors Garrote, Gil; Domínguez, Herminia; Parajó, Juan C. Applied Biochemistry and Biotechnology, Vol. 95, Issue 3, p. 195-208 https://doi.org/10.1385/ABAB:95:3:195	journal	January 2001
Cloning and characterization of two glycosidases from the acidothermophile Alicyclobacillus acidocaldarius ATCC27009 Eckert, Kelvin Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I https://doi.org/10.18452/15013	text	January 2004

Similar Records

Thermal and acid tolerant beta xylosidases, arabinofuranosidases, genes encoding, related organisms, and methods

Patent · Tue Apr 30 00:00:00 EDT 2013 · OSTI ID:1083277

Thermophilic and thermoacidophilic metabolism genes and enzymes from alicyclobacillus acidocaldarius and related organisms, methods

Patent · Mon Dec 28 23:00:00 EST 2015 · OSTI ID:1234233

Thermophilic and thermoacidophilic glycosylation genes and enzymes from Alicyclobacillus acidocaldarius and related organisms, methods

Patent · Mon Jan 11 23:00:00 EST 2016 · OSTI ID:1234645

Related Subjects

60 APPLIED LIFE SCIENCES

Thermal and acid tolerant beta-xylosidases, genes encoding, related organisms, and methods

Citation Formats

References (47)

Similar Records

Related Subjects