Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
|
journal
|
May 2018 |
Anvi’o: an advanced analysis and visualization platform for ‘omics data
|
journal
|
January 2015 |
Versatile and open software for comparing large genomes
|
journal
|
January 2004 |
Dispersing misconceptions and identifying opportunities for the use of 'omics' in soil microbial ecology
|
journal
|
June 2015 |
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
|
journal
|
November 2018 |
De novo meta-assembly of ultra-deep sequencing data
|
journal
|
June 2015 |
Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements
|
journal
|
December 2018 |
IMP: a pipeline for reproducible reference-independent integrated metagenomic and metatranscriptomic analyses
|
journal
|
December 2016 |
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
|
journal
|
October 2017 |
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
|
journal
|
October 2017 |
Species-level functional profiling of metagenomes and metatranscriptomes
|
journal
|
October 2018 |
Metagenomic species profiling using universal phylogenetic marker genes
|
journal
|
October 2013 |
Toward Accurate and Quantitative Comparative Metagenomics
|
journal
|
August 2016 |
Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper
|
journal
|
April 2017 |
Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen
|
journal
|
February 2018 |
Clustering huge protein sequence sets in linear time
|
journal
|
June 2018 |
dRep: a tool for fast and accurate genomic comparisons that enables improved genome recovery from metagenomes through de-replication
|
journal
|
July 2017 |
MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
|
journal
|
January 2015 |
Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies
|
journal
|
May 2016 |
Snakemake--a scalable bioinformatics workflow engine
|
journal
|
August 2012 |
Bioconda: sustainable and comprehensive software distribution for the life sciences
|
journal
|
July 2018 |
Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
|
journal
|
September 2017 |
metaSPAdes: a new versatile metagenomic assembler
|
journal
|
March 2017 |
Towards standards for human fecal sample processing in metagenomic studies
|
journal
|
October 2017 |
Prodigal: prokaryotic gene recognition and translation initiation site identification
|
journal
|
March 2010 |
MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
|
journal
|
October 2015 |
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
|
journal
|
August 2018 |
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
|
journal
|
May 2015 |
MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
|
journal
|
January 2019 |
A new genomic blueprint of the human gut microbiota
|
journal
|
February 2019 |
IMG/M: integrated genome and metagenome comparative data analysis system
|
journal
|
October 2016 |
MEGAHIT v1.0: A fast and scalable metagenome assembler driven by advanced methodologies and community practices
|
journal
|
June 2016 |
Mash: fast genome and metagenome distance estimation using MinHash
|
journal
|
June 2016 |
Optimization of fecal sample processing for microbiome study — The journey from bathroom to bench
|
journal
|
February 2019 |
MOCAT2: a metagenomic assembly, annotation and profiling framework
|
journal
|
April 2016 |
Diversity and composition of the North Sikkim hot spring mycobiome using a culture-independent method
|
journal
|
March 2021 |
Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads
|
journal
|
December 2020 |
Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes
|
journal
|
April 2016 |
Database resources of the National Center for Biotechnology Information
|
journal
|
January 2006 |
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
|
journal
|
November 2015 |
Draft Genome Sequence of Medusavirus Stheno, Isolated from the Tatakai River of Uji, Japan
|
journal
|
January 2021 |
Polinton-like viruses are abundant in aquatic ecosystems
|
journal
|
January 2021 |
MOCAT: A Metagenomics Assembly and Gene Prediction Toolkit
|
journal
|
October 2012 |
MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities
|
journal
|
January 2015 |
Fast and sensitive protein alignment using DIAMOND
|
journal
|
November 2014 |
Database resources of the National Center for Biotechnology Information
|
journal
|
October 2020 |
Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT
|
journal
|
October 2019 |
Snakemake—a scalable bioinformatics workflow engine
|
journal
|
May 2018 |
Database resources of the National Center for Biotechnology Information
|
journal
|
December 2007 |
Database resources of the National Center for Biotechnology Information
|
journal
|
November 2018 |
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
|
text
|
January 2016 |
Critical Assessment of Metagenome Interpretation - A benchmark of metagenomics software
|
text
|
January 2017 |
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
|
preprint
|
January 2014 |
Substantial expansion of the human gut microbiota genome catalogue
|
journal
|
March 2019 |