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Title: Metagenome-Assembled Genome Sequence of Pseudomonas stutzeri Strain CO183 Isolated from a Coalbed Methane Well

Journal Article · · Genome Announcements
ORCiD logo [1];  [2]
  1. National Energy Technology Lab. (NETL), Pittsburgh, PA (United States); AECOM, Pittsburgh, PA (United States)
  2. National Energy Technology Lab. (NETL), Pittsburgh, PA (United States)
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A near-complete Pseudomonas stutzeri draft genome was extracted from a coalbed metagenome. The draft genome described herein provides insight into the functional pathways encoded by this bacterium and its potential role in coalbed methane environments.

Research Organization:
National Energy Technology Lab. (NETL), Pittsburgh, PA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
FE0002128; FE0004000
OSTI ID:
1629847
Journal Information:
Genome Announcements, Vol. 4, Issue 6; ISSN 2169-8287
Publisher:
American Society for MicrobiologyCopyright Statement
Country of Publication:
United States
Language:
English

References (9)

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes journal May 2015
CONTIGuator: a bacterial genomes finishing tool for structural insights on draft genomes journal January 2011
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing journal May 2012
Biogenic methane production from coal: A review on recent research and development on microbially enhanced coalbed methane (MECBM) journal February 2016
PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data journal March 2013
Metagenomics of Hydrocarbon Resource Environments Indicates Aerobic Taxa and Genes to be Unexpectedly Common journal September 2013
VizBin - an application for reference-independent visualization and human-augmented binning of metagenomic data journal January 2015
The RAST Server: Rapid Annotations using Subsystems Technology journal January 2008
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes journal February 2015

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