skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Single, Double and Quadruple Alanine Substitutions at Oligomeric Interfaces Identify Hydrophobicity as the Key Determinant of Human Neutrophil Alpha Defensin HNP1 Function

Journal Article · · PLoS ONE
 [1];  [2];  [2];  [2];  [2];  [2];  [3];  [2];  [2]
  1. Xi'an Jiaotong Univ., Shaanxi (China). School of Medicine, First Affiliated Hospital, Translational Medicine Center; Univ. of Maryland, Baltimore, MD (United States). School of Medicine, Institute of Human Virology and Department of Biochemistry and Molecular Biology
  2. Univ. of Maryland, Baltimore, MD (United States). School of Medicine, Institute of Human Virology and Department of Biochemistry and Molecular Biology
  3. Xi'an Jiaotong Univ., Shaanxi (China). School of Medicine, First Affiliated Hospital, Translational Medicine Center

HNP1 is a human alpha defensin that forms dimers and multimers governed by hydrophobic residues, including Tyr16, Ile20, Leu25, and Phe28. Previously, alanine scanning mutagenesis identified each of these residues and other hydrophobic residues as important for function. Here we report further structural and functional studies of residues shown to interact with one another across oligomeric interfaces: I20A-HNP1 and L25A-HNP1, plus the double alanine mutants I20A/L25AHNP1 and Y16A/F28A-HNP1, and the quadruple alanine mutant Y16A/I20A/L25A/F28A-HNP1. We tested binding to HIV-1 gp120 and HNP1 by surface plasmon resonance, binding to HIV-1 gp41 and HNP1 by fluorescence polarization, inhibition of anthrax lethal factor, and antibacterial activity using the virtual colony count assay. Similar to the previously described single mutant W26A-HNP1, the quadruple mutant displayed the least activity in all functional assays, followed by the double mutant Y16A/F28A-HNP1. The effects of the L25A and I20A single mutations were milder than the double mutant I20A/ L25A-HNP1. Crystallographic studies confirmed the correct folding and disulfide pairing, and depicted an array of dimeric and tetrameric structures. These results indicate that side chain hydrophobicity is the critical factor that determines activity at these positions.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States). Stanford Synchrotron Radiation Lightsource (SSRL)
Sponsoring Organization:
USDOE Office of Science (SC), Biological and Environmental Research (BER); National Institutes of Health (NIH); National Institute of General Medical Sciences (NIGMS); National Center for Research Resources (NCRR)
Grant/Contract Number:
AC02-76SF00515; AI072732; AI061482
OSTI ID:
1627653
Journal Information:
PLoS ONE, Vol. 8, Issue 11; ISSN 1932-6203
Publisher:
Public Library of ScienceCopyright Statement
Country of Publication:
United States
Language:
English

References (69)

Human  -Defensin 6 Promotes Mucosal Innate Immunity Through Self-Assembled Peptide Nanonets journal June 2012
Alanine Scanning Mutagenesis of the α-Helix 115-123 of Phage T4 Lysozyme: Effects on Structure, Stability and the Binding of Solvent journal February 1995
Additivity of mutational effects in proteins journal September 1990
Refinement of Macromolecular Structures by the Maximum-Likelihood Method journal May 1997
Through the Looking Glass, Mechanistic Insights from Enantiomeric Human Defensins journal October 2009
Antimicrobial peptides of multicellular organisms journal January 2002
The Solution Structures of the Human β-Defensins Lead to a Better Understanding of the Potent Bactericidal Activity of HBD3 against Staphylococcus aureus journal December 2001
Antibacterial Activity and Specificity of the Six Human α-Defensins journal January 2005
Crystal structures of human α-defensins HNP4, HD5, and HD6 journal December 2006
Defensins: antimicrobial peptides of innate immunity journal September 2003
Resonance Assignment and Three-Dimensional Structure Determination of a Human α-Defensin, HNP-1, by Solid-State NMR journal March 2010
Combinatorial alanine-scanning journal June 2001
Defensins in innate antiviral immunity journal June 2006
Interaction of human defensins with Escherichia coli. Mechanism of bactericidal activity. journal August 1989
Alanine Scanning Mutagenesis of Aβ(1-40) Amyloid Fibril Stability journal April 2006
Additivity Principles in Biochemistry journal January 1997
Paneth cell defensins: key effector molecules of innate immunity journal March 2006
PHENIX : building new software for automated crystallographic structure determination journal October 2002
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids journal May 2007
The Structure of Human β-Defensin-2 Shows Evidence of Higher Order Oligomerization journal October 2000
Primate defensins journal September 2004
NMR studies of defensin antimicrobial peptides. 1. Resonance assignment and secondary structure determination of rabbit NP-2 and human HNP-1 journal November 1992
Human Neutrophils Kill Bacillus anthracis journal January 2005
Crystal structure of defensin HNP-3, an amphiphilic dimer: mechanisms of membrane permeabilization journal March 1991
Primary structures of three human neutrophil defensins. journal October 1985
Contribution of individual side-chains to the stability of BPTI examined by alanine-scanning mutagenesis journal January 1995
Retrocyclin-2:  Structural Analysis of a Potent Anti-HIV θ-Defensin , journal August 2007
Dual role of α-defensin-1 in anti–HIV-1 innate immunity journal March 2005
Structure-Dependent Charge Density as a Determinant of Antimicrobial Activity of Peptide Analogues of Defensin journal August 2009
Mammalian defensins in the antimicrobial immune response journal May 2005
Structure and dynamics of cationic membrane peptides and proteins: Insights from solid-state NMR: Cationic Membrane Peptides from SSNMR journal March 2011
Plectasin, a Fungal Defensin, Targets the Bacterial Cell Wall Precursor Lipid II journal May 2010
Productive Folding of Human Neutrophil α-Defensins in Vitro without the Pro-peptide journal March 2003
Coot model-building tools for molecular graphics journal November 2004
Mapping the CD4 binding site for human immunodeficiency virus by alanine-scanning mutagenesis. journal September 1990
Human  -defensins neutralize anthrax lethal toxin and protect against its fatal consequences journal March 2005
Alanine Scanning Mutagenesis of Insulin journal May 1997
In situ neutralization in Boc-chemistry solid phase peptide synthesis: Rapid, high yield assembly of difficult sequences journal September 1992
Defensins. Natural peptide antibiotics of human neutrophils. journal October 1985
Multivalent Binding of Carbohydrates by the Human α-Defensin, HD5 journal June 2009
Sometimes It Takes Two to Tango journal March 2012
MolProbity: all-atom contacts and structure validation for proteins and nucleic acids text January 2007
Paneth cell defensins: key effector molecules of innate immunity journal April 2006
θ-Defensins: Cyclic Peptides with Endless Potential journal August 2012
Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination journal September 1998
Functional interaction of human neutrophil peptide-1 with the cell wall precursor lipid II journal March 2010
Eurocin, a New Fungal Defensin journal December 2012
Insight into Invertebrate Defensin Mechanism of Action journal September 2010
MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures journal October 1991
High-resolution epitope mapping of hGH-receptor interactions by alanine-scanning mutagenesis journal June 1989
Defensin-6 mRNA in human Paneth cells: implications for antimicrobia peptides in host defense of the human bowel journal January 1993
Critical Determinants of Human α-Defensin 5 Activity against Non-enveloped Viruses journal July 2012
How to measure and predict the molar absorption coefficient of a protein journal November 1995
Multifaceted Mechanisms of HIV-1 Entry Inhibition by Human α-Defensin* journal August 2012
Functional Determinants of Human Enteric α-Defensin HD5 journal June 2012
Invariant Gly Residue Is Important for α-Defensin Folding, Dimerization, and Function journal June 2012
α-Defensins in human innate immunity: α-Defensins journal December 2011
Human β-Defensin 3 Inhibits Cell Wall Biosynthesis in Staphylococci journal April 2010
Dimerization of Plant Defensin NaD1 Enhances Its Antifungal Activity journal June 2012
Human β-defensins journal May 2006
Trp-26 Imparts Functional Versatility to Human α-Defensin HNP1 journal May 2010
Antibiotic proteins of human polymorphonuclear leukocytes. journal July 1989
Experimentally determined hydrophobicity scale for proteins at membrane interfaces journal October 1996
Structure of a novel human granulocyte peptide with anti-ACTH activity journal August 1988
Phaser crystallographic software journal July 2007
Purification and Characterization of Human Neutrophil Peptide 4, a Novel Member of the Defensin Family journal July 1989
Paneth cells of the human small intestine express an antimicrobial peptide gene journal November 1992
Rational scanning mutagenesis of a protein kinase identifies functional regions involved in catalysis and substrate interactions journal May 1991
Primary structures of six antimicrobial peptides of rabbit peritoneal neutrophils. journal April 1985

Cited By (12)

Safety, efficacy and utility of methods of transferring adhesive and cohesive Escherichia coli cells to microplates to avoid aerosols journal January 2015
Modeling of the Ebola Virus Delta Peptide Reveals a Potential Lytic Sequence Motif journal January 2015
High-Throughput Quantification of Bacterial-Cell Interactions Using Virtual Colony Counts journal February 2018
Cyclic Peptides as Novel Therapeutic Microbicides: Engineering of Human Defensin Mimetics journal July 2017
Cationic host defense peptides; novel antimicrobial therapeutics against Category A pathogens and emerging infections journal June 2016
Quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing journal January 2015
Quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing journal January 2015
Quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing journal January 2015
Quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing journal January 2015
Quantification of polysaccharides fixed to Gram stained slides using lactophenol cotton blue and digital image processing journal January 2015
Antifungal Peptides with Potential Against Pathogenic Fungi book September 2016
Role of peptide self-assembly in antimicrobial peptides: ROLE OF PEPTIDE SELF-ASSEMBLY IN ANTIMICROBIAL PEPTIDES journal June 2015