Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems

Paver, Sara F.; Muratore, Daniel; Newton, Ryan J.; Coleman, Maureen L.

doi:10.1128/msystems.00232-18

Title: Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems

Journal Article · Tue Nov 13 00:00:00 EST 2018 · mSystems

DOI:https://doi.org/10.1128/msystems.00232-18· OSTI ID:1626179

^[1]; Muratore, Daniel ^[1]; Newton, Ryan J. ^[2]; Coleman, Maureen L. ^[1]

Univ. of Chicago, IL (United States). Dept. of the Geophysical Sciences
Univ. of Wisconsin, Milwaukee, WI (United States). School of Freshwater Sciences

Marine and freshwater microbial communities are phylogenetically distinct, and transitions between habitat types are thought to be infrequent. We compared the phylogenetic diversity of marine and freshwater microorganisms and identified specific lineages exhibiting notably high or low similarity between marine and freshwater ecosystems using a meta-analysis of 16S rRNA gene tag-sequencing data sets. As expected, marine and freshwater microbial communities differed in the relative abundance of major phyla and contained habitat-specific lineages. At the same time, and contrary to expectations, many shared taxa were observed in both habitats. Based on several metrics, we found that Gammaproteobacteria, Alphaproteobacteria, Bacteroidetes, and Betaproteobacteria contained the highest number of closely related marine and freshwater sequences, suggesting comparatively recent habitat transitions in these groups. Using the abundant alphaproteobacterial group SAR11 as an example, we found evidence that new lineages, beyond the recognized LD12 clade, are detected in freshwater at low but reproducible abundances; this evidence extends beyond the 16S rRNA locus to core genes throughout the genome. Our results suggest that shared taxa are numerous, but tend to occur sporadically and at low relative abundance in one habitat type, leading to an underestimation of transition frequency between marine and freshwater habitats. Rare taxa with abundances near or below detection, including lineages that appear to have crossed the salty divide relatively recently, may possess adaptations enabling them to exploit opportunities for niche expansion when environments are disturbed or conditions change.

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Research Organization:: Univ. of Chicago, IL (United States). Dept. of the Geophysical Sciences

Sponsoring Organization:: USDOE Office of Science (SC)

Grant/Contract Number:: AC02-05CH11231

OSTI ID:: 1626179

Journal Information:: mSystems, Vol. 3, Issue 6; ISSN 2379-5077

Publisher:: American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

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59 BASIC BIOLOGICAL SCIENCES
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Title: Reevaluating the Salty Divide: Phylogenetic Specificity of Transitions between Marine and Freshwater Systems

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