A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

Grzymski, Joseph J.; Riesenfeld, Christian S.; Williams, Timothy J.; Dussaq, Alex M.; Ducklow, Hugh; Erickson, Matthew; Cavicchioli, Ricardo; Murray, Alison E.

doi:10.1038/ismej.2012.31

Title: A metagenomic assessment of winter and summer bacterioplankton from Antarctica Peninsula coastal surface waters

Journal Article · Thu Apr 26 00:00:00 EDT 2012 · The ISME Journal

DOI:https://doi.org/10.1038/ismej.2012.31· OSTI ID:1623761

Grzymski, Joseph J. ^[1]; Riesenfeld, Christian S. ^[1]; Williams, Timothy J. ^[2]; Dussaq, Alex M. ^[1]; Ducklow, Hugh ^[3]; Erickson, Matthew ^[3]; Cavicchioli, Ricardo ^[2]; Murray, Alison E. ^[1]

Desert Research Inst., Reno, NV (United States). Division of Earth and Ecosystem Sciences
Univ. of New South Wales, Sydney, NSW (Australia). School of Biotechnology and Biomolecular Sciences
Marine Biological Lab., Woods Hole, MA (United States). The Ecosystem Center

Antarctic surface oceans are well-studied during summer when irradiance levels are high, sea ice is melting and primary productivity is at a maximum. Coincident with this timing, the bacterioplankton respond with significant increases in secondary productivity. Little is known about bacterioplankton in winter when darkness and sea-ice cover inhibit photoautotrophic primary production. We report here an environmental genomic and small subunit ribosomal RNA (SSU rRNA) analysis of winter and summer Antarctic Peninsula coastal seawater bacterioplankton. Intense inter-seasonal differences were reflected through shifts in community composition and functional capacities encoded in winter and summer environmental genomes with significantly higher phylogenetic and functional diversity in winter. In general, inferred metabolisms of summer bacterioplankton were characterized by chemoheterotrophy, photoheterotrophy and aerobic anoxygenic photosynthesis while the winter community included the capacity for bacterial and archaeal chemolithoautotrophy. Chemolithoautotrophic pathways were dominant in winter and were similar to those recently reported in global ‘dark ocean’ mesopelagic waters. If chemolithoautotrophy is widespread in the Southern Ocean in winter, this process may be a previously unaccounted carbon sink and may help account for the unexplained anomalies in surface inorganic nitrogen content.

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Research Organization:: USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)

Sponsoring Organization:: USDOE; National Science Foundation (NSF); Australian Research Council (ARC)

Grant/Contract Number:: AC02-05CH11231; ANT 0632389; ANT 0632278; 0217282

OSTI ID:: 1623761

Journal Information:: The ISME Journal, Vol. 6, Issue 10; ISSN 1751-7362

Publisher:: Nature Publishing GroupCopyright Statement

Country of Publication:: United States

Language:: English

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Phaeocystis antarctica blooms strongly influence bacterial community structures in the Amundsen Sea polynya Delmont, Tom O.; Hammar, Katherine M.; Ducklow, Hugh W. Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00646	journal	December 2014
Microbial diversity and community structure across environmental gradients in Bransfield Strait, Western Antarctic Peninsula Signori, Camila N.; Thomas, FranÃ§ois; Enrich-Prast, Alex Frontiers in Microbiology, Vol. 5 https://doi.org/10.3389/fmicb.2014.00647	journal	December 2014
Genome reconstructions indicate the partitioning of ecological functions inside a phytoplankton bloom in the Amundsen Sea, Antarctica Delmont, Tom O.; Eren, A. Murat; Vineis, Joseph H. Frontiers in Microbiology, Vol. 6 https://doi.org/10.3389/fmicb.2015.01090	journal	October 2015
Microbial Community Response to Terrestrially Derived Dissolved Organic Matter in the Coastal Arctic Sipler, Rachel E.; Kellogg, Colleen T. E.; Connelly, Tara L. Frontiers in Microbiology, Vol. 8 https://doi.org/10.3389/fmicb.2017.01018	journal	June 2017
Extremophiles in an Antarctic Marine Ecosystem Dickinson, Iain; Goodall-Copestake, William; Thorne, Michael Microorganisms, Vol. 4, Issue 1 https://doi.org/10.3390/microorganisms4010008	journal	January 2016
Physiological and Molecular Responses to Main Environmental Stressors of Microalgae and Bacteria in Polar Marine Environments Lauritano, Chiara; Rizzo, Carmen; Lo Giudice, Angelina Microorganisms, Vol. 8, Issue 12 https://doi.org/10.3390/microorganisms8121957	journal	December 2020
Viruses of Polar Aquatic Environments Yau, Sheree; Seth-Pasricha, Mansha Viruses, Vol. 11, Issue 2 https://doi.org/10.3390/v11020189	journal	February 2019

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