skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Design and Synthesis of Highly Potent HIV-1 Protease Inhibitors Containing Tricyclic Fused Ring Systems as Novel P2 Ligands: Structure–Activity Studies, Biological and X-ray Structural Analysis

Journal Article · · Journal of Medicinal Chemistry
ORCiD logo [1];  [1];  [1];  [1];  [1];  [1];  [2];  [3];  [4];  [4]; ORCiD logo [4];  [5]
  1. Purdue Univ., West Lafayette, IN (United States)
  2. Kumamoto Univ. Graduate School of Biomedical Sciences (Japan); Kumamoto Health Science Univ. (Japan)
  3. Kumamoto Univ. Graduate School of Biomedical Sciences (Japan); Kumamoto Health Science Univ. (Japan); National Inst. of Health (NIH), Bethesda, MD (United States)
  4. Georgia State Univ., Atlanta, GA (United States)
  5. Kumamoto Univ. Graduate School of Biomedical Sciences (Japan); National Center for Global Health and Medicine Research Institute, Tokyo (Japan); National Inst. of Health (NIH), Bethesda, MD (United States)

The design, synthesis, and biological evaluation of a new class of HIV-1 protease inhibitors containing stereochemically defined fused tricyclic polyethers as the P2 ligands and a variety of sulfonamide derivatives as the P2' ligands are described. A number of ring sizes and various substituent effects were investigated to enhance the ligand–backbone interactions in the protease active site. Inhibitors 5c and 5d containing this unprecedented fused 6–5–5 ring system as the P2 ligand, an aminobenzothiazole as the P2' ligand, and a difluorophenylmethyl as the P1 ligand exhibited exceptional enzyme inhibitory potency and maintained excellent antiviral activity against a panel of highly multidrug-resistant HIV-1 variants. The umbrella-like P2 ligand for these inhibitors has been synthesized efficiently in an optically active form using a Pauson–Khand cyclization reaction as the key step. The racemic alcohols were resolved efficiently using a lipase catalyzed enzymatic resolution. As a result, two high resolution X-ray structures of inhibitor-bound HIV-1 protease revealed extensive interactions with the backbone atoms of HIV-1 protease and provided molecular insight into the binding properties of these new inhibitors.

Research Organization:
Argonne National Laboratory (ANL), Argonne, IL (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES); National Inst. of Health
Grant/Contract Number:
W-31-109-Eng-38; GM53386; GM62920
OSTI ID:
1460842
Journal Information:
Journal of Medicinal Chemistry, Vol. 61, Issue 10; ISSN 0022-2623
Publisher:
American Chemical Society (ACS)Copyright Statement
Country of Publication:
United States
Language:
ENGLISH
Citation Metrics:
Cited by: 23 works
Citation information provided by
Web of Science

References (61)

Improved survival in HIV-infected persons: consequences and perspectives journal July 2007
GRL-09510, a Unique P2-Crown-Tetrahydrofuranylurethane -Containing HIV-1 Protease Inhibitor, Maintains Its Favorable Antiviral Activity against Highly-Drug-Resistant HIV-1 Variants in vitro journal September 2017
High Resolution Crystal Structures of HIV-1 Protease with a Potent Non-peptide Inhibitor (UIC-94017) Active Against Multi-drug-resistant Clinical Strains journal April 2004
Structure-Based Drug Design: Exploring the Proper Filling of Apolar Pockets at Enzyme Active Sites journal June 2008
Overview of the CCP 4 suite and current developments journal March 2011
Biological Aspects of Emerging Benzothiazoles: A Short Review journal January 2013
The Effect of Highly Active Antiretroviral Therapy on the Survival of HIV-Infected Children in a Resource-Deprived Setting: A Cohort Study journal June 2011
A simple, continuous fluorometric assay for HIV protease journal December 1990
Synthesis and optical resolution of high affinity P2-ligands for HIV-1 protease inhibitors journal January 1995
Ultra-high Resolution Crystal Structure of HIV-1 Protease Mutant Reveals Two Binding Sites for Clinical Inhibitor TMC114 journal October 2006
Palladium assisted transfer hydrogenation of cyclic α,β-unsaturated ketones by ammonium formate journal January 1994
Design and Development of Highly Potent HIV-1 Protease Inhibitors with a Crown-Like Oxotricyclic Core as the P2-Ligand To Combat Multidrug-Resistant HIV Variants journal April 2017
The Pauson–Khand reaction, a powerful synthetic tool for the synthesis of complex molecules journal January 2004
Current status and challenges of antiretroviral research and therapy journal January 2010
Disubstituted Bis-THF Moieties as New P2 Ligands in Nonpeptidal HIV-1 Protease Inhibitors (II) journal April 2015
[16] SHELXL: High-resolution refinement book January 1997
The development of antiretroviral therapy and its impact on the HIV-1/AIDS pandemic journal January 2010
A novel central nervous system-penetrating protease inhibitor overcomes human immunodeficiency virus 1 resistance with unprecedented aM to pM potency journal October 2017
The CCP4 suite programs for protein crystallography journal September 1994
Novel bis-Tetrahydrofuranylurethane-Containing Nonpeptidic Protease Inhibitor (PI) UIC-94017 (TMC114) with Potent Activity against Multi-PI-Resistant Human Immunodeficiency Virus In Vitro journal September 2003
In Vitro Selection of Highly Darunavir-Resistant and Replication-Competent HIV-1 Variants by Using a Mixture of Clinical HIV-1 Isolates Resistant to Multiple Conventional Protease Inhibitors journal September 2010
Disubstituted Bis-THF Moieties as New P2 Ligands in Nonpeptidal HIV-1 Protease Inhibitors journal March 2011
Design and Synthesis of Piperazine Sulfonamide Cores Leading to Highly Potent HIV-1 Protease Inhibitors journal November 2017
INHIBITORS OF HIV-1 PROTEASE: A Major Success of Structure-Assisted Drug Design journal June 1998
Design and synthesis of potent HIV-1 protease inhibitors with ( S )-tetrahydrofuran-tertiary amine-acetamide as P2−ligand: Structure−activity studies and biological evaluation journal September 2017
Probing Multidrug-Resistance and Protein-Ligand Interactions with Oxatricyclic Designed Ligands in HIV-1 Protease Inhibitors journal September 2010
Fluorine in Pharmaceuticals: Looking Beyond Intuition journal September 2007
TMC114, a Novel Human Immunodeficiency Virus Type 1 Protease Inhibitor Active against Protease Inhibitor-Resistant Viruses, Including a Broad Range of Clinical Isolates journal May 2005
Design and Synthesis of Potent HIV-1 Protease Inhibitors Incorporating Hexahydrofuropyranol-Derived High Affinity P 2 Ligands: Structure−Activity Studies and Biological Evaluation journal January 2011
PRODRG : a tool for high-throughput crystallography of protein–ligand complexes journal July 2004
Uses of Cobalt-Carbonyl Acetylene Complexes in Organic Synthesis? journal November 1977
Structural implications of drug-resistant mutants of HIV-1 protease: High-resolution crystal structures of the mutant protease/substrate analogue complexes journal January 2001
N-oxide promoted pauson-khand cyclizations at room temperature journal January 1990
Allenyl allylic ethers: synthesis and thermal rearrangements journal October 1993
Synthesis and biological evaluation of novel amprenavir-based P1-substituted bi-aryl derivatives as ultra-potent HIV-1 protease inhibitors journal March 2012
Recent Progress in the Development of HIV-1 Protease Inhibitors for the Treatment of HIV/AIDS journal January 2016
Synthesis and biological evaluation of novel HIV-1 protease inhibitors using tertiary amine as P2-ligands journal May 2015
A short history of SHELX journal December 2007
HIV-associated neurocognitive disorder — pathogenesis and prospects for treatment journal March 2016
Recent Advances in the Pauson–Khand Reaction and Related [2+2+1] Cycloadditions journal May 2000
Loss of the Protease Dimerization Inhibition Activity of Tipranavir (TPV) and Its Association with the Acquisition of Resistance to TPV by HIV-1 journal September 2012
Enhancing Protein Backbone Binding-A Fruitful Concept for Combating Drug-Resistant HIV journal January 2012
Coot model-building tools for molecular graphics journal November 2004
The khand reaction journal January 1985
Convertible Formation of Different Glycoside Using Molecular Iodine journal January 2010
Features and development of Coot journal March 2010
Bis-Tetrahydrofuran: a Privileged Ligand for Darunavir and a New Generation of HIV Protease Inhibitors That Combat Drug Resistance journal September 2006
Design of HIV Protease Inhibitors Targeting Protein Backbone: An Effective Strategy for Combating Drug Resistance journal January 2008
Anhydrides as acylating agents in lipase-catalyzed stereoselective esterification of racemic alcohols journal November 1988
A graphical user interface to the CCP 4 program suite journal June 2003
A Comprehensive Review on Recent advances in Synthesis & Pharmacotherapeutic potential of Benzothiazoles journal October 2015
HIV-1 Protease: Structural Perspectives on Drug Resistance journal December 2009
Protease inhibitor-based antiretroviral therapy in treatment-naive HIV-1-infected patients: the evidence behind the options journal April 2010
Association of highly active antiretroviral therapy coverage, population viral load, and yearly new HIV diagnoses in British Columbia, Canada: a population-based study journal August 2010
Amprenavir complexes with HIV-1 protease and its drug-resistant mutants altering hydrophobic clusters: HIV protease mutants altering hydrophobic clusters journal August 2010
The Protein Data Bank journal January 2000
Darunavir, a conceptually new HIV-1 protease inhibitor for the treatment of drug-resistant HIV journal December 2007
Demonstration of Sustained Drug-Resistant Human Immunodeficiency Virus Type 1 Lineages Circulating among Treatment-Naive Individuals journal January 2009
[20] Processing of X-ray diffraction data collected in oscillation mode book January 1997
Phaser crystallographic software journal July 2007
Discovery of MK-8718, an HIV Protease Inhibitor Containing a Novel Morpholine Aspartate Binding Group journal May 2016

Cited By (1)