skip to main content
OSTI.GOV title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: A novel inert crystal delivery medium for serial femtosecond crystallography

Journal Article · · IUCrJ
 [1];  [2];  [2];  [3];  [2];  [2];  [2];  [4];  [2];  [5];  [4];  [6];  [7];  [2];  [2];  [5];  [5];  [2];  [6];  [8] more »;  [2];  [2];  [2];  [2] « less
  1. Arizona State Univ., Tempe, AZ (United States);The Biodesign Inst., Tempe, AZ (United States)
  2. Arizona State Univ., Tempe, AZ (United States); The Biodesign Inst., Tempe, AZ (United States)
  3. Arizona State Univ., Tempe, AZ (United States)
  4. SLAC National Accelerator Laboratory, Menlo Park, CA (United States)
  5. Deutsches Elektronen-Synchrotron (DESY), Hamburg (Germany)
  6. SLAC National Accelerator Lab., Menlo Park, CA (United States)
  7. Univ. of Wisconsin-Milwaukee, Milwaukee, WI (United States); The Biodesign Inst., Tempe, AZ (United States)
  8. Univ. of Southern California, Los Angeles, CA (United States)

Serial femtosecond crystallography (SFX) has opened a new era in crystallography by permitting nearly damage-free, room-temperature structure determination of challenging proteins such as membrane proteins. In SFX, femtosecond X-ray free-electron laser pulses produce diffraction snapshots from nanocrystals and microcrystals delivered in a liquid jet, which leads to high protein consumption. A slow-moving stream of agarose has been developed as a new crystal delivery medium for SFX. It has low background scattering, is compatible with both soluble and membrane proteins, and can deliver the protein crystals at a wide range of temperatures down to 4°C. Using this crystal-laden agarose stream, the structure of a multi-subunit complex, phycocyanin, was solved to 2.5 Å resolution using 300 µg of microcrystals embedded into the agarose medium post-crystallization. The agarose delivery method reduces protein consumption by at least 100-fold and has the potential to be used for a diverse population of proteins, including membrane protein complexes.

Research Organization:
SLAC National Accelerator Laboratory (SLAC), Menlo Park, CA (United States)
Sponsoring Organization:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
Grant/Contract Number:
AC03-76SF00515; SC0010575
OSTI ID:
1208832
Journal Information:
IUCrJ, Vol. 2, Issue 4; ISSN 2052-2525
Publisher:
International Union of CrystallographyCopyright Statement
Country of Publication:
United States
Language:
English
Citation Metrics:
Cited by: 104 works
Citation information provided by
Web of Science

References (39)

Time-resolved protein nanocrystallography using an X-ray free-electron laser journal January 2012
The agarose double helix and its function in agarose gel structure journal December 1974
Self-terminating diffraction gates femtosecond X-ray nanocrystallography measurements journal December 2011
Cheetah : software for high-throughput reduction and analysis of serial femtosecond X-ray diffraction data journal May 2014
Crystallization of biological macromolecules using agarose gel journal September 2002
Room-temperature serial crystallography at synchrotron X-ray sources using slowly flowing free-standing high-viscosity microstreams journal January 2015
High-Resolution Protein Structure Determination by Serial Femtosecond Crystallography journal May 2012
The Coherent X-ray Imaging (CXI) instrument at the Linac Coherent Light Source (LCLS) journal March 2010
Breaking the indexing ambiguity in serial crystallography journal December 2013
A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes journal January 2015
Crystallizing membrane proteins using lipidic mesophases journal April 2009
Femtosecond X-ray protein nanocrystallography journal February 2011
A simple mechanical mixer for small viscous lipid-containing samples journal September 1998
Lipidic cubic phase technologies for membrane protein structural studies journal August 2011
Gas dynamic virtual nozzle for generation of microscopic droplet streams journal September 2008
Structural basis for bifunctional peptide recognition at human δ-opioid receptor journal February 2015
Improved isolation and crystallization of photosystem I for structural analysis journal June 1998
Agarose as crystallization media for proteins journal November 2001
The druggable genome journal September 2002
Toward structure determination using membrane–protein nanocrystals and microcrystals journal December 2011
Structure of a photosynthetic reaction centre determined by serial femtosecond crystallography journal December 2013
Lipidic phase membrane protein serial femtosecond crystallography journal January 2012
Three-dimensional structure of cyanobacterial photosystem I at 2.5 Å resolution journal June 2001
Linking Crystallographic Model and Data Quality journal May 2012
Femtosecond protein nanocrystallography—data analysis methods journal January 2010
Structure-factor analysis of femtosecond microdiffraction patterns from protein nanocrystals journal February 2011
Second-Order Nonlinear Optical Imaging of Chiral Crystals journal July 2011
Serial time-resolved crystallography of photosystem II using a femtosecond X-ray laser journal July 2014
Lipidic cubic phases: A novel concept for the crystallization of membrane proteins journal December 1996
Serial Femtosecond Crystallography of G Protein-Coupled Receptors journal December 2013
Crystal growth of proteins, nucleic acids, and viruses in gels journal November 2009
Solving structures of protein complexes by molecular replacement with Phaser journal December 2006
Potential impact of an X-ray free electron laser on structural biology journal October 2004
X-ray crystallographic structure of the light-harvesting biliprotein C-phycocyanin from the thermophilic cyanobacterium Mastigocladus laminosus and its resemblance to globin structures journal July 1985
Nanoflow electrospinning serial femtosecond crystallography journal October 2012
Grease matrix as a versatile carrier of proteins for serial crystallography journal November 2014
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography journal February 2014
CrystFEL : a software suite for snapshot serial crystallography journal March 2012
Structure of the Angiotensin Receptor Revealed by Serial Femtosecond Crystallography journal May 2015

Cited By (35)

Climbing the Data Mountain: Processing of SFX Data book January 2018
High-speed fixed-target serial virus crystallography journal June 2017
Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons journal September 2017
Hydroxyethyl cellulose matrix applied to serial crystallography journal April 2017
Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography journal February 2018
Polyacrylamide injection matrix for serial femtosecond crystallography journal February 2019
Viscosity-adjustable grease matrices for serial nanocrystallography journal January 2020
Oil-free hyaluronic acid matrix for serial femtosecond crystallography journal April 2016
Graphene-based microfluidics for serial crystallography journal January 2016
Microfluidics: From crystallization to serial time-resolved crystallography journal May 2017
The serial millisecond crystallography instrument at the Australian Synchrotron incorporating the “Lipidico” injector journal August 2019
Shortening injection matrix for serial crystallography posted_content July 2019
X-ray free-electron laser: opportunities for drug discovery journal July 2018
Stable sample delivery in viscous media via a capillary for serial crystallography journal February 2020
Microcrystal delivery by pulsed liquid droplet for serial femtosecond crystallography journal March 2016
Sample delivery for serial crystallography at free-electron lasers and synchrotrons journal January 2019
Seeding from silica-reinforced lysozyme crystals for neutron crystallography journal November 2018
A guide to sample delivery systems for serial crystallography journal August 2019
Serial Femtosecond Crystallography text January 2015
Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography text January 2016
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography text January 2016
Short-wavelength free-electron laser sources and science: a review text January 2017
Sample Delivery Media for Serial Crystallography journal March 2019
Polysaccharide-Based Injection Matrix for Serial Crystallography journal May 2020
Shortening injection matrix for serial crystallography journal January 2020
X-ray free electron laser: opportunities for drug discovery journal November 2017
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography journal May 2017
Lipidic cubic phase injector is a viable crystal delivery system for time-resolved serial crystallography text January 2016
Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons text January 2017
Strategies for sample delivery for femtosecond crystallography text January 2019
Climbing the Data Mountain: Processing of SFX Data text January 2018
Structures of riboswitch RNA reaction states by mix-and-inject XFEL serial crystallography journal November 2016
Serial Femtosecond Crystallography journal November 2015
Supersaturation-controlled microcrystallization and visualization analysis for serial femtosecond crystallography text January 2018
Short-wavelength free-electron laser sources and science: a review journal October 2017