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Title: Evidence of the Involvement of a Cyclase Gene in the Biosynthesis of Ochratoxin A in Aspergillus carbonarius

Abstract

Ochratoxin A (OTA) is a well-known mycotoxin with wide distribution in food and feed. Fungal genome sequencing has great utility for identifying secondary metabolites gene clusters for known and novel compounds. A comparative analysis of the OTA-biosynthetic cluster in A. steynii, A. westerdijkiae, A. niger, A. carbonarius, and P. nordicum has revealed a high synteny in OTA cluster organization in five structural genes (otaA, otaB, ota, otaR1, and otaD). Moreover, a recent detailed comparative genome analysis of Aspergilli OTA producers led to the identification of a cyclase gene, otaY, located in the OTA cluster between the otaA and otaB genes, encoding for a predicted protein with high similarity to SnoaLs domain. These proteins have been shown to catalyze ring closure steps in the biosynthesis of polyketide antibiotics produced in Streptomyces. In the present study, we demonstrated an upregulation of the cyclase gene in A. carbonarius under OTA permissive conditions, consistent with the expression trends of the other OTA cluster genes and their role in OTA biosynthesis by complete gene deletion. Our results pointed out the involvement of a cyclase gene in OTA biosynthetic pathway for the first time. They represent a step forward in the understanding of the molecular basis ofmore » OTA biosynthesis in A. carbonarius.« less

Authors:
ORCiD logo [1];  [2];  [3];  [1];  [1]; ORCiD logo [4]; ORCiD logo [1]
  1. National Research Council (CNR), Bari (Italy). Inst. of Sciences of Food Production (ISPA)
  2. National Research Council (CNR), Lecce (Italy). Inst. of Sciences of Food Production (ISPA)
  3. Cranfield Univ. (United Kingdom)
  4. Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Joint BioEnergy Institute (JBEI), Emeryville, CA (United States)
Publication Date:
Research Org.:
Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER)
OSTI Identifier:
1840753
Report Number(s):
PNNL-SA-169400
Journal ID: ISSN 2072-6651
Grant/Contract Number:  
AC05-76RL01830
Resource Type:
Accepted Manuscript
Journal Name:
Toxins
Additional Journal Information:
Journal Volume: 13; Journal Issue: 12; Journal ID: ISSN 2072-6651
Publisher:
MDPI
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; OTA; biosynthetic cluster; SnoaL domain; polyketide cyclases; CRISPR/Cas9

Citation Formats

Ferrara, Massimo, Gallo, Antonia, Cervini, Carla, Gambacorta, Lucia, Solfrizzo, Michele, Baker, Scott E., and Perrone, Giancarlo. Evidence of the Involvement of a Cyclase Gene in the Biosynthesis of Ochratoxin A in Aspergillus carbonarius. United States: N. p., 2021. Web. doi:10.3390/toxins13120892.
Ferrara, Massimo, Gallo, Antonia, Cervini, Carla, Gambacorta, Lucia, Solfrizzo, Michele, Baker, Scott E., & Perrone, Giancarlo. Evidence of the Involvement of a Cyclase Gene in the Biosynthesis of Ochratoxin A in Aspergillus carbonarius. United States. https://doi.org/10.3390/toxins13120892
Ferrara, Massimo, Gallo, Antonia, Cervini, Carla, Gambacorta, Lucia, Solfrizzo, Michele, Baker, Scott E., and Perrone, Giancarlo. Mon . "Evidence of the Involvement of a Cyclase Gene in the Biosynthesis of Ochratoxin A in Aspergillus carbonarius". United States. https://doi.org/10.3390/toxins13120892. https://www.osti.gov/servlets/purl/1840753.
@article{osti_1840753,
title = {Evidence of the Involvement of a Cyclase Gene in the Biosynthesis of Ochratoxin A in Aspergillus carbonarius},
author = {Ferrara, Massimo and Gallo, Antonia and Cervini, Carla and Gambacorta, Lucia and Solfrizzo, Michele and Baker, Scott E. and Perrone, Giancarlo},
abstractNote = {Ochratoxin A (OTA) is a well-known mycotoxin with wide distribution in food and feed. Fungal genome sequencing has great utility for identifying secondary metabolites gene clusters for known and novel compounds. A comparative analysis of the OTA-biosynthetic cluster in A. steynii, A. westerdijkiae, A. niger, A. carbonarius, and P. nordicum has revealed a high synteny in OTA cluster organization in five structural genes (otaA, otaB, ota, otaR1, and otaD). Moreover, a recent detailed comparative genome analysis of Aspergilli OTA producers led to the identification of a cyclase gene, otaY, located in the OTA cluster between the otaA and otaB genes, encoding for a predicted protein with high similarity to SnoaLs domain. These proteins have been shown to catalyze ring closure steps in the biosynthesis of polyketide antibiotics produced in Streptomyces. In the present study, we demonstrated an upregulation of the cyclase gene in A. carbonarius under OTA permissive conditions, consistent with the expression trends of the other OTA cluster genes and their role in OTA biosynthesis by complete gene deletion. Our results pointed out the involvement of a cyclase gene in OTA biosynthetic pathway for the first time. They represent a step forward in the understanding of the molecular basis of OTA biosynthesis in A. carbonarius.},
doi = {10.3390/toxins13120892},
journal = {Toxins},
number = 12,
volume = 13,
place = {United States},
year = {Mon Dec 13 00:00:00 EST 2021},
month = {Mon Dec 13 00:00:00 EST 2021}
}

Works referenced in this record:

Identification and characterization of the polyketide synthase involved in ochratoxin A biosynthesis in Aspergillus carbonarius
journal, June 2014


Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species
journal, January 2018

  • Kjærbølling, Inge; Vesth, Tammi C.; Frisvad, Jens C.
  • Proceedings of the National Academy of Sciences, Vol. 115, Issue 4
  • DOI: 10.1073/pnas.1715954115

Selection is required for efficient Cas9-mediated genome editing in Fusarium graminearum
journal, February 2018


Functional Role of Aspergillus carbonarius AcOTAbZIP Gene, a bZIP Transcription Factor within the OTA Gene Cluster
journal, February 2021


Development of the CRISPR/Cas9 System for Targeted Gene Disruption in Aspergillus fumigatus
journal, November 2015

  • Fuller, Kevin K.; Chen, Shan; Loros, Jennifer J.
  • Eukaryotic Cell, Vol. 14, Issue 11
  • DOI: 10.1128/EC.00107-15

Structure of the polyketide cyclase SnoaL reveals a novel mechanism for enzymatic aldol condensation
journal, April 2004


Coordinated and Iterative Enzyme Catalysis in Fungal Polyketide Biosynthesis
journal, August 2016


A new approach to Cas9-based genome editing in Aspergillus niger that is precise, efficient and selectable
journal, January 2019


Functional Reconstitution of a Fungal Natural Product Gene Cluster by Advanced Genome Editing
journal, September 2016


The Genomic Regions That Contain Ochratoxin A Biosynthetic Genes Widely Differ in Aspergillus Section Circumdati Species
journal, November 2020

  • Gil-Serna, Jéssica; Vázquez, Covadonga; Patiño, Belén
  • Toxins, Vol. 12, Issue 12
  • DOI: 10.3390/toxins12120754

CRISPR/Cas9 Based Genome Editing of Penicillium chrysogenum
journal, April 2016


A CRISPR-Cas9 System for Genome Editing of Fusarium proliferatum
journal, December 2019


Efficient genome editing in Fusarium oxysporum based on CRISPR/Cas9 ribonucleoprotein complexes
journal, August 2018


Occurrence of ochratoxin A in commodities and processed food – A review of EU occurrence data
journal, January 2005


Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88
journal, January 2007

  • Pel, Herman J.; de Winde, Johannes H.; Archer, David B.
  • Nature Biotechnology, Vol. 25, Issue 2, p. 221-231
  • DOI: 10.1038/nbt1282

The architectures of iterative type I PKS and FAS
journal, January 2018

  • Herbst, Dominik A.; Townsend, Craig A.; Maier, Timm
  • Natural Product Reports, Vol. 35, Issue 10
  • DOI: 10.1039/C8NP00039E

CRISPR/Cas9‐based genome engineering: A new breakthrough in the genetic manipulation of filamentous fungi
journal, November 2020

  • Ullah, Mati; Xia, Lin; Xie, Shangxian
  • Biotechnology and Applied Biochemistry, Vol. 67, Issue 6
  • DOI: 10.1002/bab.2077

Efficient gene editing in Neurospora crassa with CRISPR technology
journal, July 2015

  • Matsu-ura, Toru; Baek, Mokryun; Kwon, Jungin
  • Fungal Biology and Biotechnology, Vol. 2, Issue 1
  • DOI: 10.1186/s40694-015-0015-1

The MaSuRCA genome assembler
journal, August 2013


Efficient genome editing in filamentous fungus Trichoderma reesei using the CRISPR/Cas9 system
journal, May 2015


FunGeneClusterS: Predicting fungal gene clusters from genome and transcriptome data
journal, June 2016

  • Vesth, Tammi C.; Brandl, Julian; Andersen, Mikael Rørdam
  • Synthetic and Systems Biotechnology, Vol. 1, Issue 2
  • DOI: 10.1016/j.synbio.2016.01.002

Recent advances on the molecular aspects of ochratoxin A biosynthesis
journal, October 2017


Quantitative Proteomics Analysis Reveals the Function of the Putative Ester Cyclase UvEC1 in the Pathogenicity of the Rice False Smut Fungus Ustilaginoidea virens
journal, April 2021

  • Chen, Xiaoyang; Pei, Zhangxin; Li, Pingping
  • International Journal of Molecular Sciences, Vol. 22, Issue 8
  • DOI: 10.3390/ijms22084069

Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes.
journal, January 1995


Highly efficient CRISPR mutagenesis by microhomology-mediated end joining in Aspergillus fumigatus
journal, January 2016


Balkan endemic nephropathy: Role of ochratoxins A through biomarkers
journal, June 2006

  • Castegnaro, Marcel; Canadas, Delphine; Vrabcheva, Terry
  • Molecular Nutrition & Food Research, Vol. 50, Issue 6
  • DOI: 10.1002/mnfr.200500182

Ochratoxin A: 50 Years of Research
journal, July 2016

  • Malir, Frantisek; Ostry, Vladimir; Pfohl-Leszkowicz, Annie
  • Toxins, Vol. 8, Issue 7
  • DOI: 10.3390/toxins8070191

Development of a genome editing technique using the CRISPR/Cas9 system in the industrial filamentous fungus Aspergillus oryzae
journal, December 2015


Determination of Ochratoxin A in Wine and Beer by Immunoaffinity Column Cleanup and Liquid Chromatographic Analysis with Fluorometric Detection: Collaborative Study
journal, November 2001

  • Visconti, Angelo; Pascale, Michelangelo; Centonze, Gianluca
  • Journal of AOAC INTERNATIONAL, Vol. 84, Issue 6
  • DOI: 10.1093/jaoac/84.6.1818

Comparative Genomic Analysis of Ochratoxin A Biosynthetic Cluster in Producing Fungi: New Evidence of a Cyclase Gene Involvement
journal, December 2020


A CRISPR-Cas9 System for Genetic Engineering of Filamentous Fungi
journal, July 2015


Biosynthetic Cyclization Catalysts for the Assembly of Peptide and Polyketide Natural Products
journal, April 2021

  • Adrover‐Castellano, Maria L.; Schmidt, Jennifer J.; Sherman, David H.
  • ChemCatChem, Vol. 13, Issue 9
  • DOI: 10.1002/cctc.202001886

Effects of temperature and water activity change on ecophysiology of ochratoxigenic Aspergillus carbonarius in field-simulating conditions
journal, February 2020


Engineering Aspergillus niger for galactaric acid production: elimination of galactaric acid catabolism by using RNA sequencing and CRISPR/Cas9
journal, December 2016

  • Kuivanen, Joosu; Wang, Y. -M. Jasmin; Richard, Peter
  • Microbial Cell Factories, Vol. 15, Issue 1
  • DOI: 10.1186/s12934-016-0613-5

Efficient Biosynthesis of Fungal Polyketides Containing the Dioxabicyclo-octane Ring System
journal, September 2015

  • Mao, Xu-Ming; Zhan, Zha-Jun; Grayson, Matthew N.
  • Journal of the American Chemical Society, Vol. 137, Issue 37
  • DOI: 10.1021/jacs.5b07816

Advances in cloning, functional analysis and heterologous expression of fungal polyketide synthase genes
journal, August 2006


New Insight into the Ochratoxin A Biosynthetic Pathway through Deletion of a Nonribosomal Peptide Synthetase Gene in Aspergillus carbonarius
journal, September 2012

  • Gallo, Antonia; Bruno, Kenneth S.; Solfrizzo, Michele
  • Applied and Environmental Microbiology, Vol. 78, Issue 23
  • DOI: 10.1128/AEM.02508-12

Ochratoxin A: General Overview and Actual Molecular Status
journal, March 2010


Establishment of CRISPR/Cas9 in Alternaria alternata
journal, April 2017

  • Wenderoth, Maximilian; Pinecker, Christoph; Voß, Benjamin
  • Fungal Genetics and Biology, Vol. 101
  • DOI: 10.1016/j.fgb.2017.03.001

Selection is required for efficient Cas9-mediated genome editing in Fusarium graminearum
journal, February 2018


Advances in cloning, functional analysis and heterologous expression of fungal polyketide synthase genes
journal, August 2006


FunGeneClusterS: Predicting fungal gene clusters from genome and transcriptome data
journal, June 2016

  • Vesth, Tammi C.; Brandl, Julian; Andersen, Mikael Rørdam
  • Synthetic and Systems Biotechnology, Vol. 1, Issue 2
  • DOI: 10.1016/j.synbio.2016.01.002

Determination of Ochratoxin A in Wine and Beer by Immunoaffinity Column Cleanup and Liquid Chromatographic Analysis with Fluorometric Detection: Collaborative Study
journal, November 2001

  • Visconti, Angelo; Pascale, Michelangelo; Centonze, Gianluca
  • Journal of AOAC INTERNATIONAL, Vol. 84, Issue 6
  • DOI: 10.1093/jaoac/84.6.1818

Identification of a Halogenase Involved in the Biosynthesis of Ochratoxin A in Aspergillus carbonarius
journal, July 2016

  • Ferrara, Massimo; Perrone, Giancarlo; Gambacorta, Lucia
  • Applied and Environmental Microbiology, Vol. 82, Issue 18
  • DOI: 10.1128/aem.01209-16