DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: One of the Substrate Waters for O2 Formation in Photosystem II Is Provided by the Water-Splitting Mn4CaO5 Cluster’s Ca2+ Ion

Abstract

During the catalytic step immediately prior to O–O bond formation in Photosystem II, a water molecule deprotonates and moves next to the water-splitting Mn4CaO5 cluster’s O5 oxo bridge. Considerable evidence identifies O5 as one of the two substrate waters that ultimately form O2. The relocated oxygen, known as O6 or Ox, may be the second. It is currently debated whether O6 or Ox originates as the Mn-bound water denoted W2 or as the Ca2+-bound water denoted W3. To distinguish between these two possibilities, we analyzed the D–O–D bending mode of the water molecule that deprotonates/relocates to become O6/Ox. Here, we show that this D–O–D bending mode is not altered by the D1-S169A mutation. Previously, we showed that this D–O–D bending mode is altered substantially when Sr2+ is substituted for Ca2+. Because Sr2+/Ca2+ substitution alters this D–O–D bending mode but the D1-S169A mutation does not, we conclude that the water-derived oxygen that relocates and becomes O6/Ox derives from the Ca2+-bound W3. This conclusion provides an important constraint for proposed mechanisms of O–O bond formation in Photosystem II.

Authors:
 [1]; ORCiD logo [1]
  1. Univ. of California, Riverside, CA (United States)
Publication Date:
Research Org.:
Univ. of California, Riverside, CA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES). Chemical Sciences, Geosciences & Biosciences Division
OSTI Identifier:
1785444
Grant/Contract Number:  
SC0005291
Resource Type:
Accepted Manuscript
Journal Name:
Biochemistry
Additional Journal Information:
Journal Volume: 58; Journal Issue: 29; Journal ID: ISSN 0006-2960
Publisher:
American Chemical Society (ACS)
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES; 37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Genetics; Molecules; Ions; Transition metals; Water

Citation Formats

Kim, Christopher J., and Debus, Richard J. One of the Substrate Waters for O2 Formation in Photosystem II Is Provided by the Water-Splitting Mn4CaO5 Cluster’s Ca2+ Ion. United States: N. p., 2019. Web. doi:10.1021/acs.biochem.9b00418.
Kim, Christopher J., & Debus, Richard J. One of the Substrate Waters for O2 Formation in Photosystem II Is Provided by the Water-Splitting Mn4CaO5 Cluster’s Ca2+ Ion. United States. https://doi.org/10.1021/acs.biochem.9b00418
Kim, Christopher J., and Debus, Richard J. Fri . "One of the Substrate Waters for O2 Formation in Photosystem II Is Provided by the Water-Splitting Mn4CaO5 Cluster’s Ca2+ Ion". United States. https://doi.org/10.1021/acs.biochem.9b00418. https://www.osti.gov/servlets/purl/1785444.
@article{osti_1785444,
title = {One of the Substrate Waters for O2 Formation in Photosystem II Is Provided by the Water-Splitting Mn4CaO5 Cluster’s Ca2+ Ion},
author = {Kim, Christopher J. and Debus, Richard J.},
abstractNote = {During the catalytic step immediately prior to O–O bond formation in Photosystem II, a water molecule deprotonates and moves next to the water-splitting Mn4CaO5 cluster’s O5 oxo bridge. Considerable evidence identifies O5 as one of the two substrate waters that ultimately form O2. The relocated oxygen, known as O6 or Ox, may be the second. It is currently debated whether O6 or Ox originates as the Mn-bound water denoted W2 or as the Ca2+-bound water denoted W3. To distinguish between these two possibilities, we analyzed the D–O–D bending mode of the water molecule that deprotonates/relocates to become O6/Ox. Here, we show that this D–O–D bending mode is not altered by the D1-S169A mutation. Previously, we showed that this D–O–D bending mode is altered substantially when Sr2+ is substituted for Ca2+. Because Sr2+/Ca2+ substitution alters this D–O–D bending mode but the D1-S169A mutation does not, we conclude that the water-derived oxygen that relocates and becomes O6/Ox derives from the Ca2+-bound W3. This conclusion provides an important constraint for proposed mechanisms of O–O bond formation in Photosystem II.},
doi = {10.1021/acs.biochem.9b00418},
journal = {Biochemistry},
number = 29,
volume = 58,
place = {United States},
year = {Fri Jul 05 00:00:00 EDT 2019},
month = {Fri Jul 05 00:00:00 EDT 2019}
}

Journal Article:
Free Publicly Available Full Text
Publisher's Version of Record

Citation Metrics:
Cited by: 24 works
Citation information provided by
Web of Science

Save / Share:

Works referenced in this record:

Recent developments in biological water oxidation
journal, April 2016

  • Pérez-Navarro, Montserrat; Neese, Frank; Lubitz, Wolfgang
  • Current Opinion in Chemical Biology, Vol. 31
  • DOI: 10.1016/j.cbpa.2016.02.007

Missing Pieces in the Puzzle of Biological Water Oxidation
journal, September 2018


Water oxidation in photosystem II
journal, June 2019


Crystal structure of oxygen-evolving photosystem II at a resolution of 1.9 Å
journal, April 2011

  • Umena, Yasufumi; Kawakami, Keisuke; Shen, Jian-Ren
  • Nature, Vol. 473, Issue 7345
  • DOI: 10.1038/nature09913

Native structure of photosystem II at 1.95 Å resolution viewed by femtosecond X-ray pulses
journal, November 2014

  • Suga, Michihiro; Akita, Fusamichi; Hirata, Kunio
  • Nature, Vol. 517, Issue 7532
  • DOI: 10.1038/nature13991

Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II
journal, January 2017

  • Tanaka, Ayako; Fukushima, Yoshimasa; Kamiya, Nobuo
  • Journal of the American Chemical Society, Vol. 139, Issue 5
  • DOI: 10.1021/jacs.6b09666

Structure of spinach photosystem II–LHCII supercomplex at 3.2 Å resolution
journal, May 2016


Subunit and chlorophyll organization of the plant photosystem II supercomplex
journal, June 2017

  • van Bezouwen, Laura S.; Caffarri, Stefano; Kale, Ravindra S.
  • Nature Plants, Vol. 3, Issue 7
  • DOI: 10.1038/nplants.2017.80

Structure and assembly mechanism of plant C 2 S 2 M 2 -type PSII-LHCII supercomplex
journal, August 2017


Structure, assembly and energy transfer of plant photosystem II supercomplex
journal, September 2018

  • Cao, Peng; Su, Xiaodong; Pan, Xiaowei
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1859, Issue 9
  • DOI: 10.1016/j.bbabio.2018.03.007

Light-induced structural changes and the site of O=O bond formation in PSII caught by XFEL
journal, February 2017

  • Suga, Michihiro; Akita, Fusamichi; Sugahara, Michihiro
  • Nature, Vol. 543, Issue 7643
  • DOI: 10.1038/nature21400

Structures of the intermediates of Kok’s photosynthetic water oxidation clock
journal, November 2018


Detection of the Water-Binding Sites of the Oxygen-Evolving Complex of Photosystem II Using W-Band 17 O Electron–Electron Double Resonance-Detected NMR Spectroscopy
journal, September 2012

  • Rapatskiy, Leonid; Cox, Nicholas; Savitsky, Anton
  • Journal of the American Chemical Society, Vol. 134, Issue 40
  • DOI: 10.1021/ja3053267

Ammonia binding to the oxygen-evolving complex of photosystem II identifies the solvent-exchangeable oxygen bridge ( -oxo) of the manganese tetramer
journal, September 2013

  • Perez Navarro, M.; Ames, W. M.; Nilsson, H.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 39
  • DOI: 10.1073/pnas.1304334110

Structure, ligands and substrate coordination of the oxygen-evolving complex of photosystem II in the S2 state: a combined EPR and DFT study
journal, January 2014

  • Lohmiller, Thomas; Krewald, Vera; Navarro, Montserrat Pérez
  • Physical Chemistry Chemical Physics, Vol. 16, Issue 24
  • DOI: 10.1039/c3cp55017f

The First State in the Catalytic Cycle of the Water-Oxidizing Enzyme: Identification of a Water-Derived μ-Hydroxo Bridge
journal, October 2017

  • Lohmiller, Thomas; Krewald, Vera; Sedoud, Arezki
  • Journal of the American Chemical Society, Vol. 139, Issue 41
  • DOI: 10.1021/jacs.7b05263

18O-Water exchange in photosystem II: Substrate binding and intermediates of the water splitting cycle
journal, February 2008


Reflections on substrate water and dioxygen formation
journal, August 2013

  • Cox, Nicholas; Messinger, Johannes
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1827, Issue 8-9
  • DOI: 10.1016/j.bbabio.2013.01.013

Substrate water exchange in photosystem II core complexes of the extremophilic red alga Cyanidioschyzon merolae
journal, August 2014

  • Nilsson, Håkan; Krupnik, Tomasz; Kargul, Joanna
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1837, Issue 8
  • DOI: 10.1016/j.bbabio.2014.04.001

Computational Insights on Crystal Structures of the Oxygen-Evolving Complex of Photosystem II with Either Ca 2+ or Ca 2+ Substituted by Sr 2+
journal, January 2015

  • Vogt, Leslie; Ertem, Mehmed Z.; Pal, Rhitankar
  • Biochemistry, Vol. 54, Issue 3
  • DOI: 10.1021/bi5011706

Electronic structure of the oxygen-evolving complex in photosystem II prior to O-O bond formation
journal, August 2014


Two Interconvertible Structures that Explain the Spectroscopic Properties of the Oxygen-Evolving Complex of Photosystem II in the S 2 State
journal, August 2012

  • Pantazis, Dimitrios A.; Ames, William; Cox, Nicholas
  • Angewandte Chemie International Edition, Vol. 51, Issue 39
  • DOI: 10.1002/anie.201204705

Structural isomers of the S 2 state in photosystem II: do they exist at room temperature and are they important for function?
journal, March 2019

  • Chatterjee, Ruchira; Lassalle, Louise; Gul, Sheraz
  • Physiologia Plantarum, Vol. 166, Issue 1
  • DOI: 10.1111/ppl.12947

Structures and Energetics for O 2 Formation in Photosystem II
journal, December 2009

  • Siegbahn, Per E. M.
  • Accounts of Chemical Research, Vol. 42, Issue 12
  • DOI: 10.1021/ar900117k

Water oxidation mechanism in photosystem II, including oxidations, proton release pathways, O―O bond formation and O2 release
journal, August 2013


Alternative mechanisms for O 2 release and O–O bond formation in the oxygen evolving complex of photosystem II
journal, January 2015

  • Li, Xichen; Siegbahn, Per E. M.
  • Physical Chemistry Chemical Physics, Vol. 17, Issue 18
  • DOI: 10.1039/C5CP00138B

Strong Coupling between the Hydrogen Bonding Environment and Redox Chemistry during the S 2 to S 3 Transition in the Oxygen-Evolving Complex of Photosystem II
journal, April 2015

  • Isobe, Hiroshi; Shoji, Mitsuo; Shen, Jian-Ren
  • The Journal of Physical Chemistry B, Vol. 119, Issue 43
  • DOI: 10.1021/acs.jpcb.5b05740

QM/MM study of the S2 to S3 transition reaction in the oxygen-evolving complex of photosystem II
journal, September 2015


Mechanism of Water Delivery to the Active Site of Photosystem II along the S 2 to S 3 Transition
journal, January 2016

  • Capone, Matteo; Narzi, Daniele; Bovi, Daniele
  • The Journal of Physical Chemistry Letters, Vol. 7, Issue 3
  • DOI: 10.1021/acs.jpclett.5b02851

A five-coordinate Mn( iv ) intermediate in biological water oxidation: spectroscopic signature and a pivot mechanism for water binding
journal, January 2016

  • Retegan, Marius; Krewald, Vera; Mamedov, Fikret
  • Chemical Science, Vol. 7, Issue 1
  • DOI: 10.1039/C5SC03124A

Redox-coupled substrate water reorganization in the active site of Photosystem II—The role of calcium in substrate water delivery
journal, June 2016

  • Ugur, Ilke; Rutherford, A. William; Kaila, Ville R. I.
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1857, Issue 6
  • DOI: 10.1016/j.bbabio.2016.01.015

The S 2 to S 3 transition for water oxidation in PSII (photosystem II), revisited
journal, January 2018

  • Siegbahn, Per E. M.
  • Physical Chemistry Chemical Physics, Vol. 20, Issue 35
  • DOI: 10.1039/C8CP03720E

NH 3 Binding to the S 2 State of the O 2 -Evolving Complex of Photosystem II: Analogue to H 2 O Binding during the S 2 → S 3 Transition
journal, September 2015


S 3 State of the O 2 -Evolving Complex of Photosystem II: Insights from QM/MM, EXAFS, and Femtosecond X-ray Diffraction
journal, February 2016


Crystallographic Data Support the Carousel Mechanism of Water Supply to the Oxygen-Evolving Complex of Photosystem II
journal, September 2017


Theoretical Evaluation of Structural Models of the S 2 State in the Oxygen Evolving Complex of Photosystem II: Protonation States and Magnetic Interactions
journal, December 2011

  • Ames, William; Pantazis, Dimitrios A.; Krewald, Vera
  • Journal of the American Chemical Society, Vol. 133, Issue 49
  • DOI: 10.1021/ja2041805

The S 2 State of the Oxygen-Evolving Complex of Photosystem II Explored by QM/MM Dynamics: Spin Surfaces and Metastable States Suggest a Reaction Path Towards the S 3 State
journal, September 2013

  • Bovi, Daniele; Narzi, Daniele; Guidoni, Leonardo
  • Angewandte Chemie International Edition, Vol. 52, Issue 45
  • DOI: 10.1002/anie.201306667

Impact of D1-V185 on the Water Molecules That Facilitate O 2 Formation by the Catalytic Mn 4 CaO 5 Cluster in Photosystem II
journal, June 2018


D1-S169A Substitution of Photosystem II Perturbs Water Oxidation
journal, February 2019


Structure of Sr-substituted photosystem II at 2.1 A resolution and its implications in the mechanism of water oxidation
journal, February 2013

  • Koua, F. H. M.; Umena, Y.; Kawakami, K.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 10
  • DOI: 10.1073/pnas.1219922110

What does the Sr-substituted 2.1 Å resolution crystal structure of photosystem II reveal about the water oxidation mechanism?
journal, January 2014

  • Terrett, Richard; Petrie, Simon; Pace, Ron J.
  • Chem. Commun., Vol. 50, Issue 24
  • DOI: 10.1039/C3CC49324E

Mid- to Low-Frequency Fourier Transform Infrared Spectra of S-State Cycle for Photosynthetic Water Oxidation in Synechocystis sp. PCC 6803
journal, June 2004

  • Yamanari, Toshihiro; Kimura, Yukihiro; Mizusawa, Naoki
  • Biochemistry, Vol. 43, Issue 23
  • DOI: 10.1021/bi0362323

Fourier transform infrared analysis of the photosynthetic oxygen-evolving center
journal, February 2008


Protein ligation of the photosynthetic oxygen-evolving center
journal, February 2008


Monitoring the reactions of photosynthetic water oxidation using infrared spectroscopy
journal, January 2013

  • Noguchi, Takumi
  • Biomedical Spectroscopy and Imaging, Vol. 2, Issue 2
  • DOI: 10.3233/BSI-130040

FTIR studies of metal ligands, networks of hydrogen bonds, and water molecules near the active site Mn4CaO5 cluster in Photosystem II
journal, January 2015


The low spin - high spin equilibrium in the S2-state of the water oxidizing enzyme
journal, May 2018

  • Boussac, Alain; Ugur, Ilke; Marion, Antoine
  • Biochimica et Biophysica Acta (BBA) - Bioenergetics, Vol. 1859, Issue 5
  • DOI: 10.1016/j.bbabio.2018.02.010

Monitoring the Reaction Process During the S 2 → S 3 Transition in Photosynthetic Water Oxidation Using Time-Resolved Infrared Spectroscopy
journal, January 2017

  • Sakamoto, Hiroki; Shimizu, Tatsuki; Nagao, Ryo
  • Journal of the American Chemical Society, Vol. 139, Issue 5
  • DOI: 10.1021/jacs.6b11989

Seven Steps of Alternating Electron and Proton Transfer in Photosystem II Water Oxidation Traced by Time-Resolved Photothermal Beam Deflection at Improved Sensitivity
journal, August 2014

  • Klauss, André; Haumann, Michael; Dau, Holger
  • The Journal of Physical Chemistry B, Vol. 119, Issue 6
  • DOI: 10.1021/jp509069p

S 0 -State Model of the Oxygen-Evolving Complex of Photosystem II
journal, October 2013

  • Pal, Rhitankar; Negre, Christian F. A.; Vogt, Leslie
  • Biochemistry, Vol. 52, Issue 44
  • DOI: 10.1021/bi401214v

Metal oxidation states in biological water splitting
journal, January 2015

  • Krewald, Vera; Retegan, Marius; Cox, Nicholas
  • Chemical Science, Vol. 6, Issue 3
  • DOI: 10.1039/C4SC03720K