DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Programming Amphiphilic Peptoid Oligomers for Hierarchical Assembly and Inorganic Crystallization

Abstract

Natural organisms make a wide variety of exquisitely complex, nano-, micro-, and macroscale structured materials in an energy-efficient and highly reproducible manner. During these processes, the information-carrying biomolecules (e.g., proteins, peptides, and carbohydrates) enable (1) hierarchical organization to assemble scaffold materials and execute high-level functions and (2) exquisite control over inorganic materials synthesis, generating biominerals whose properties are optimized for their functions. Inspired by nature, significant efforts have been devoted to developing functional materials that can rival those natural molecules by mimicking in vivo functions using engineered proteins, peptides, DNAs, sequence-defined synthetic molecules (e.g., peptoids), and other biomimetic polymers. Among them, peptoids, a new type of synthetic mimetics of peptides and proteins, have received particular attention because they combine the merits of both synthetic polymers (e.g., high chemical stability and efficient synthesis) and biomolecules (e.g., sequence programmability and biocompatibility). The lack of both chirality and hydrogen bonds in their backbone results in a highly designable peptoid-based system with reduced structural complexity and side chain-chemistry-dominated properties. Here in this Account, we present our recent efforts in this field by programming amphiphilic peptoid sequences for (1) the controlled self-assembly into different hierarchically structured nanomaterials with favorable properties and (2) manipulating inorganic (nano)crystalmore » nucleation, growth, and assembly into superstructures. First, we designed a series of amphiphilic peptoids with controlled side chain chemistries that self-assembled into 1D highly stiff and dynamic nanotubes, 2D membrane-mimetic nanosheets, hexagonally patterned nanoribbons, and 3D nanoflowers. These crystalline nanostructures exhibited sequence-dependent properties and showed promise for different applications. The corresponding peptoid self-assembly pathways and mechanisms were also investigated by leveraging in situ atomic force microscopy studies and molecular dynamics simulations, which showed precise sequence dependency. Second, inspired by peptide- and protein-controlled formation of hierarchical inorganic nanostructures in nature, we developed peptoid-based biomimetic approaches for controlled synthesis of inorganic materials (e.g., noble metals and calcite), in which we took advantage of the substantial side chain chemistry of peptoids and investigated the relationship between the peptoid sequences and the morphology and growth kinetics of inorganic materials. For example, to overcome the challenges (e.g., complexity of protein- and peptide-folding, poor thermal and chemical stabilities) facing the area of protein- and peptide-controlled synthesis of inorganic materials, we recently reported the design of sequence-defined peptoids for controlled synthesis of highly branched plasmonic gold particles. Moreover, we developed a rule of thumb for designing peptoids that predictively enabled the morphological evolution from spherical to coral-shaped gold nanoparticles (NPs). With this Account, we hope to stimulate the research interest of chemists and materials scientists and promote the predictive synthesis of functional and robust materials through the design of sequence-defined synthetic molecules.« less

Authors:
 [1]; ORCiD logo [1]; ORCiD logo [1]
  1. Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
Publication Date:
Research Org.:
Univ. of Washington, Seattle, WA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES)
OSTI Identifier:
1781120
Grant/Contract Number:  
SC0019288; AC05-76RL01830
Resource Type:
Accepted Manuscript
Journal Name:
Accounts of Chemical Research
Additional Journal Information:
Journal Volume: 54; Journal Issue: 1; Journal ID: ISSN 0001-4842
Publisher:
American Chemical Society
Country of Publication:
United States
Language:
English
Subject:
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CHEMISTRY; Self organization; Crystallization; Nanotubes; Two dimensional materials; Hydrophobicity

Citation Formats

Cai, Bin, Li, Zhiliang, and Chen, Chun-Long. Programming Amphiphilic Peptoid Oligomers for Hierarchical Assembly and Inorganic Crystallization. United States: N. p., 2020. Web. doi:10.1021/acs.accounts.0c00533.
Cai, Bin, Li, Zhiliang, & Chen, Chun-Long. Programming Amphiphilic Peptoid Oligomers for Hierarchical Assembly and Inorganic Crystallization. United States. https://doi.org/10.1021/acs.accounts.0c00533
Cai, Bin, Li, Zhiliang, and Chen, Chun-Long. Mon . "Programming Amphiphilic Peptoid Oligomers for Hierarchical Assembly and Inorganic Crystallization". United States. https://doi.org/10.1021/acs.accounts.0c00533. https://www.osti.gov/servlets/purl/1781120.
@article{osti_1781120,
title = {Programming Amphiphilic Peptoid Oligomers for Hierarchical Assembly and Inorganic Crystallization},
author = {Cai, Bin and Li, Zhiliang and Chen, Chun-Long},
abstractNote = {Natural organisms make a wide variety of exquisitely complex, nano-, micro-, and macroscale structured materials in an energy-efficient and highly reproducible manner. During these processes, the information-carrying biomolecules (e.g., proteins, peptides, and carbohydrates) enable (1) hierarchical organization to assemble scaffold materials and execute high-level functions and (2) exquisite control over inorganic materials synthesis, generating biominerals whose properties are optimized for their functions. Inspired by nature, significant efforts have been devoted to developing functional materials that can rival those natural molecules by mimicking in vivo functions using engineered proteins, peptides, DNAs, sequence-defined synthetic molecules (e.g., peptoids), and other biomimetic polymers. Among them, peptoids, a new type of synthetic mimetics of peptides and proteins, have received particular attention because they combine the merits of both synthetic polymers (e.g., high chemical stability and efficient synthesis) and biomolecules (e.g., sequence programmability and biocompatibility). The lack of both chirality and hydrogen bonds in their backbone results in a highly designable peptoid-based system with reduced structural complexity and side chain-chemistry-dominated properties. Here in this Account, we present our recent efforts in this field by programming amphiphilic peptoid sequences for (1) the controlled self-assembly into different hierarchically structured nanomaterials with favorable properties and (2) manipulating inorganic (nano)crystal nucleation, growth, and assembly into superstructures. First, we designed a series of amphiphilic peptoids with controlled side chain chemistries that self-assembled into 1D highly stiff and dynamic nanotubes, 2D membrane-mimetic nanosheets, hexagonally patterned nanoribbons, and 3D nanoflowers. These crystalline nanostructures exhibited sequence-dependent properties and showed promise for different applications. The corresponding peptoid self-assembly pathways and mechanisms were also investigated by leveraging in situ atomic force microscopy studies and molecular dynamics simulations, which showed precise sequence dependency. Second, inspired by peptide- and protein-controlled formation of hierarchical inorganic nanostructures in nature, we developed peptoid-based biomimetic approaches for controlled synthesis of inorganic materials (e.g., noble metals and calcite), in which we took advantage of the substantial side chain chemistry of peptoids and investigated the relationship between the peptoid sequences and the morphology and growth kinetics of inorganic materials. For example, to overcome the challenges (e.g., complexity of protein- and peptide-folding, poor thermal and chemical stabilities) facing the area of protein- and peptide-controlled synthesis of inorganic materials, we recently reported the design of sequence-defined peptoids for controlled synthesis of highly branched plasmonic gold particles. Moreover, we developed a rule of thumb for designing peptoids that predictively enabled the morphological evolution from spherical to coral-shaped gold nanoparticles (NPs). With this Account, we hope to stimulate the research interest of chemists and materials scientists and promote the predictive synthesis of functional and robust materials through the design of sequence-defined synthetic molecules.},
doi = {10.1021/acs.accounts.0c00533},
journal = {Accounts of Chemical Research},
number = 1,
volume = 54,
place = {United States},
year = {Mon Nov 02 00:00:00 EST 2020},
month = {Mon Nov 02 00:00:00 EST 2020}
}

Works referenced in this record:

Engineered Biomimetic Polymers as Tunable Agents for Controlling CaCO3 Mineralization
journal, April 2011

  • Chen, Chun-Long; Qi, Jiahui; Zuckermann, Ronald N.
  • Journal of the American Chemical Society, Vol. 133, Issue 14, p. 5214-5217
  • DOI: 10.1021/ja200595f

Peptoids that mimic the structure, function, and mechanism of helical antimicrobial peptides
journal, February 2008

  • Chongsiriwatana, N. P.; Patch, J. A.; Czyzewski, A. M.
  • Proceedings of the National Academy of Sciences, Vol. 105, Issue 8
  • DOI: 10.1073/pnas.0708254105

Crystallization Pathways in Biomineralization
journal, August 2011


Controlling protein assembly on inorganic crystals through designed protein interfaces
journal, July 2019


Nucleation of Crystals from Solution: Classical and Two-Step Models
journal, May 2009

  • Erdemir, Deniz; Lee, Alfred Y.; Myerson, Allan S.
  • Accounts of Chemical Research, Vol. 42, Issue 5
  • DOI: 10.1021/ar800217x

Building two-dimensional materials one row at a time: Avoiding the nucleation barrier
journal, December 2018


Designed Peptoids as Tunable Modifiers of Zeolite Crystallization
journal, October 2017


Current challenges and future directions for bacterial self-healing concrete
journal, February 2018


Hierarchical Assembly of Peptoid‐Based Cylindrical Micelles Exhibiting Efficient Resonance Energy Transfer in Aqueous Solution
journal, August 2019

  • Jiao, Fang; Wu, Xuepeng; Jian, Tengyue
  • Angewandte Chemie International Edition, Vol. 58, Issue 35
  • DOI: 10.1002/anie.201904598

The physical properties of supramolecular peptide assemblies: from building block association to technological applications
journal, January 2014

  • Adler-Abramovich, Lihi; Gazit, Ehud
  • Chem. Soc. Rev., Vol. 43, Issue 20
  • DOI: 10.1039/C4CS00164H

Bioinspired Peptoid Nanotubes for Targeted Tumor Cell Imaging and Chemo‐Photodynamic Therapy
journal, August 2019


Design, Synthesis, Assembly, and Engineering of Peptoid Nanosheets
journal, January 2016

  • Robertson, Ellen J.; Battigelli, Alessia; Proulx, Caroline
  • Accounts of Chemical Research, Vol. 49, Issue 3
  • DOI: 10.1021/acs.accounts.5b00439

Simulations of Ovocleidin-17 Binding to Calcite Surfaces and Its Implications for Eggshell Formation
journal, March 2011

  • Freeman, Colin L.; Harding, John H.; Quigley, David
  • The Journal of Physical Chemistry C, Vol. 115, Issue 16
  • DOI: 10.1021/jp200145m

Peptoid nanosheets exhibit a new secondary-structure motif
journal, October 2015

  • Mannige, Ranjan V.; Haxton, Thomas K.; Proulx, Caroline
  • Nature, Vol. 526, Issue 7573
  • DOI: 10.1038/nature15363

Rigidification of Neutral Lipid Bilayers in the Presence of Salts
journal, October 2007


Guest Inclusion and Structural Dynamics in 2-D Hydrogen-Bonded Metal−Organic Frameworks
journal, December 2008

  • Chen, Chun-Long; Beatty, Alicia M.
  • Journal of the American Chemical Society, Vol. 130, Issue 51
  • DOI: 10.1021/ja806180z

Programming biomolecular self-assembly pathways
journal, January 2008

  • Yin, Peng; Choi, Harry M. T.; Calvert, Colby R.
  • Nature, Vol. 451, Issue 7176
  • DOI: 10.1038/nature06451

Repair of tooth enamel by a biomimetic mineralization frontier ensuring epitaxial growth
journal, August 2019


Helical Peptoid Mimics of Magainin-2 Amide
journal, October 2003

  • Patch, James A.; Barron, Annelise E.
  • Journal of the American Chemical Society, Vol. 125, Issue 40
  • DOI: 10.1021/ja037320d

Simple, Helical Peptoid Analogs of Lung Surfactant Protein B
journal, January 2005


Free-floating ultrathin two-dimensional crystals from sequence-specific peptoid polymers
journal, April 2010

  • Nam, Ki Tae; Shelby, Sarah A.; Choi, Philip H.
  • Nature Materials, Vol. 9, Issue 5
  • DOI: 10.1038/nmat2742

Soft X-ray tomography of phenotypic switching and the cellular response to antifungal peptoids in Candida albicans
journal, October 2009

  • Uchida, M.; McDermott, G.; Wetzler, M.
  • Proceedings of the National Academy of Sciences, Vol. 106, Issue 46
  • DOI: 10.1073/pnas.0906145106

Peptide Nanotubes
journal, June 2014


Quantitative Evaluation of the Relative Cell Permeability of Peptoids and Peptides
journal, February 2007

  • Kwon, Yong-Uk; Kodadek, Thomas
  • Journal of the American Chemical Society, Vol. 129, Issue 6
  • DOI: 10.1021/ja0668623

Peptoid Polymers: A Highly Designable Bioinspired Material
journal, May 2013


Highly stable and self-repairing membrane-mimetic 2D nanomaterials assembled from lipid-like peptoids
journal, July 2016

  • Jin, Haibao; Jiao, Fang; Daily, Michael D.
  • Nature Communications, Vol. 7, Issue 1
  • DOI: 10.1038/ncomms12252

Design and characterization of a microbial self-healing gel for enhanced oil recovery
journal, January 2017

  • Wu, Jun; Wang, Hou-Feng; Wang, Xian-Bin
  • RSC Advances, Vol. 7, Issue 5
  • DOI: 10.1039/C6RA25814J

A Readily Applicable Strategy to Convert Peptides to Peptoid-based Therapeutics
journal, March 2013


Designable and dynamic single-walled stiff nanotubes assembled from sequence-defined peptoids
journal, January 2018


Tunable assembly of biomimetic peptoids as templates to control nanostructure catalytic activity
journal, January 2018

  • Merrill, Nicholas A.; Yan, Feng; Jin, Haibao
  • Nanoscale, Vol. 10, Issue 26
  • DOI: 10.1039/C8NR03852J

Tuning calcite morphology and growth acceleration by a rational design of highly stable protein-mimetics
journal, September 2014

  • Chen, Chun-Long; Qi, Jiahui; Tao, Jinhui
  • Scientific Reports, Vol. 4, Issue 1
  • DOI: 10.1038/srep06266

Calcium phosphates in biomedical applications: materials for the future?
journal, March 2016


Tuning crystallization pathways through sequence engineering of biomimetic polymers
journal, April 2017

  • Ma, Xiang; Zhang, Shuai; Jiao, Fang
  • Nature Materials, Vol. 16, Issue 7
  • DOI: 10.1038/nmat4891

Efficient method for the preparation of peptoids [oligo(N-substituted glycines)] by submonomer solid-phase synthesis
journal, December 1992

  • Zuckermann, Ronald N.; Kerr, Janice M.; Kent, Stephen B. H.
  • Journal of the American Chemical Society, Vol. 114, Issue 26
  • DOI: 10.1021/ja00052a076

Role of molecular charge and hydrophilicity in regulating the kinetics of crystal growth
journal, December 2006

  • Elhadj, S.; De Yoreo, J. J.; Hoyer, J. R.
  • Proceedings of the National Academy of Sciences, Vol. 103, Issue 51, p. 19237-19242
  • DOI: 10.1073/pnas.0605748103

Interaction of Ethanol and Water with the {101̅4} Surface of Calcite
journal, September 2010

  • Cooke, D. J.; Gray, R. J.; Sand, K. K.
  • Langmuir, Vol. 26, Issue 18
  • DOI: 10.1021/la100670k

Solid‐phase synthesis of three‐armed star‐shaped peptoids and their hierarchical self‐assembly
journal, January 2019

  • Jin, Haibao; Jian, Tengyue; Ding, Yan‐Huai
  • Biopolymers, Vol. 110, Issue 4
  • DOI: 10.1002/bip.23258

Using Biomimetic Polymers in Place of Noncollagenous Proteins to Achieve Functional Remineralization of Dentin Tissues
journal, November 2017


Efficient Cytosolic Delivery Using Crystalline Nanoflowers Assembled from Fluorinated Peptoids
journal, November 2018


Biomimetic peptoid oligomers as dual-action antifreeze agents
journal, November 2012

  • Huang, M. L.; Ehre, D.; Jiang, Q.
  • Proceedings of the National Academy of Sciences, Vol. 109, Issue 49
  • DOI: 10.1073/pnas.1212826109

Sequence Programmable Peptoid Polymers for Diverse Materials Applications
journal, April 2015

  • Knight, Abigail S.; Zhou, Effie Y.; Francis, Matthew B.
  • Advanced Materials, Vol. 27, Issue 38
  • DOI: 10.1002/adma.201500275

Self-Repair and Patterning of 2D Membrane-Like Peptoid Materials
journal, August 2016

  • Jiao, Fang; Chen, Yulin; Jin, Haibao
  • Advanced Functional Materials, Vol. 26, Issue 48
  • DOI: 10.1002/adfm.201602365

Controlled synthesis of highly-branched plasmonic gold nanoparticles through peptoid engineering
journal, June 2018


Calcium Ions to Remotely Control the Reversible Switching of Secondary and Quaternary Structures in Bioconjugates
journal, April 2011

  • Kühnle, Romina I.; Börner, Hans G.
  • Angewandte Chemie International Edition, Vol. 50, Issue 19
  • DOI: 10.1002/anie.201100141

Surface-Engineered Dendrimers in Gene Delivery
journal, May 2015

  • Yang, Jiepin; Zhang, Qiang; Chang, Hong
  • Chemical Reviews, Vol. 115, Issue 11
  • DOI: 10.1021/cr500542t

Bioinspired structural materials
journal, October 2014

  • Wegst, Ulrike G. K.; Bai, Hao; Saiz, Eduardo
  • Nature Materials, Vol. 14, Issue 1
  • DOI: 10.1038/nmat4089

γ-AApeptides: Design, Structure, and Applications
journal, February 2016


A Universal Method for Detection of Amyloidogenic Misfolded Proteins
journal, May 2011

  • Yam, Alice Y.; Wang, Xuemei; Gao, Carol Man
  • Biochemistry, Vol. 50, Issue 20
  • DOI: 10.1021/bi200215j

Peptoids and Polypeptoids at the Frontier of Supra- and Macromolecular Engineering
journal, December 2015


Thermodynamic and Kinetic Parameters for Calcite Nucleation on Peptoid and Model Scaffolds: A Step toward Nacre Mimicry
journal, April 2020

  • Nielsen, Anne R.; Jelavić, Stanislav; Murray, Daniel
  • Crystal Growth & Design, Vol. 20, Issue 6
  • DOI: 10.1021/acs.cgd.0c00029