Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments
Abstract
Wenxinia marina Ying et al. 2007 is the type species of the genus Wenxinia, a representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, isolated from oilfield sediments of the South China Sea. This family was shown to harbor the most abundant bacteria especially from coastal and polar waters, but was also found in microbial mats, sediments and attached to different kind of surfaces. Here we describe the features of W. marina strain HY34T together with the genome sequence and annotation of strain DSM 24838T and novel aspects of its phenotype. The 4,181,754 bp containing genome sequence encodes 4,047 protein-coding genes and 59 RNA genes. The genome of W. marina DSM 24838T was sequenced as part of the activities of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project funded by the DoE and the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG).
- Authors:
-
- Sorbonne Univ., Paris (France). Observatoire Océanologique; Centre National de la Recherche Scientifique (CNRS), Banyuls-sur-Mer (France). Observatoire Océanologique
- Leibniz Inst. DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
- USDOE Joint Genome Institute (JGI), Walnut Creek, CA (United States)
- Leibniz Inst. DSMZ – German Collection of Microorganisms and Cell Cultures, Braunschweig (Germany)
- Los Alamos National Lab. (LANL), Los Alamos, NM (United States). Biological Data Management and Technology Center
- Publication Date:
- Research Org.:
- Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
- Sponsoring Org.:
- USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; German Research Foundation (DFG)
- OSTI Identifier:
- 1629551
- Grant/Contract Number:
- AC52-07NA27344; AC02-05CH11231
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Standards in Genomic Sciences
- Additional Journal Information:
- Journal Volume: 9; Journal Issue: 3; Journal ID: ISSN 1944-3277
- Publisher:
- BioMed Central
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 59 BASIC BIOLOGICAL SCIENCES; aerobic; heterotrophic; rod-shaped; quorum sensing; autoinducer; prophage-like structures; Roseobacter group; Rhodobacteraceae; Alphaproteobacteria
Citation Formats
Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Spring, Stefan, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., and Klenk, Hans-Peter. Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments. United States: N. p., 2014.
Web. doi:10.4056/sigs.5601028.
Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Spring, Stefan, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., & Klenk, Hans-Peter. Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments. United States. https://doi.org/10.4056/sigs.5601028
Riedel, Thomas, Fiebig, Anne, Han, James, Huntemann, Marcel, Spring, Stefan, Petersen, Jörn, Ivanova, Natalia N., Markowitz, Victor, Woyke, Tanja, Göker, Markus, Kyrpides, Nikos C., and Klenk, Hans-Peter. Sun .
"Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments". United States. https://doi.org/10.4056/sigs.5601028. https://www.osti.gov/servlets/purl/1629551.
@article{osti_1629551,
title = {Genome sequence of the Wenxinia marina type strain (DSM 24838T), a representative of the Roseobacter group isolated from oilfield sediments},
author = {Riedel, Thomas and Fiebig, Anne and Han, James and Huntemann, Marcel and Spring, Stefan and Petersen, Jörn and Ivanova, Natalia N. and Markowitz, Victor and Woyke, Tanja and Göker, Markus and Kyrpides, Nikos C. and Klenk, Hans-Peter},
abstractNote = {Wenxinia marina Ying et al. 2007 is the type species of the genus Wenxinia, a representative of the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae, isolated from oilfield sediments of the South China Sea. This family was shown to harbor the most abundant bacteria especially from coastal and polar waters, but was also found in microbial mats, sediments and attached to different kind of surfaces. Here we describe the features of W. marina strain HY34T together with the genome sequence and annotation of strain DSM 24838T and novel aspects of its phenotype. The 4,181,754 bp containing genome sequence encodes 4,047 protein-coding genes and 59 RNA genes. The genome of W. marina DSM 24838T was sequenced as part of the activities of the Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project funded by the DoE and the Transregional Collaborative Research Centre 51 (TRR51) funded by the German Research Foundation (DFG).},
doi = {10.4056/sigs.5601028},
journal = {Standards in Genomic Sciences},
number = 3,
volume = 9,
place = {United States},
year = {Sun Jun 15 00:00:00 EDT 2014},
month = {Sun Jun 15 00:00:00 EDT 2014}
}
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Wenxinia marina gen. nov., sp. nov., a novel member of the Roseobacter clade isolated from oilfield sediments of the South China Sea
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CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats
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Impacts of pr-10a Overexpression at the Molecular and the Phenotypic Level
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Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects
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Genomic Encyclopedia of Type Strains, Phase I: The one thousand microbial genomes (KMG-I) project
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Works referencing / citing this record:
Exemplar Abstract for Wenxinia marina Ying et al. 2007 emend. Hördt et al. 2020.
dataset, January 2013
- Parker, Charles Thomas; Taylor, Dorothea; Garrity, George M.
- NamesforLife