DOE PAGES title logo U.S. Department of Energy
Office of Scientific and Technical Information

Title: Draft Genome Assembly of Delftia acidovorans Type Strain 2167

Abstract

The Delftia acidovorans 2167 (ATCC 15668, Delftia type strain) genome was sequenced into a 6-contig scaffolded assembly of 6.78-Mb. This environmental microbe, previously named to both the Comamonas and Pseudomonas genera, is an opportunistic pathogen and often the subject of phylogenetic placement debates.

Authors:
 [1];  [1];  [2];  [3];  [1];  [1];  [2];  [3];  [2];  [4];  [4];  [4];  [3];  [1];  [1];  [1]
  1. Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
  2. U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, MD (United States). Diagnostic Systems Division (DSD)
  3. Naval Medical Research Center (NMRC), Frederick, Fort Detrick, MD (United States); Henry M. Jackson Foundation, Bethesda, MD (United States)
  4. U.S. Army Medical Research Institute of Infectious Diseases (USAMRIID), Fort Detrick, MD (United States). Center for Genome Sciences (CGS)
Publication Date:
Research Org.:
Los Alamos National Lab. (LANL), Los Alamos, NM (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; Defense Threat Reduction Agency (DTRA), Joint Science and Technology Office
OSTI Identifier:
1629333
Resource Type:
Accepted Manuscript
Journal Name:
Genome Announcements
Additional Journal Information:
Journal Volume: 2; Journal Issue: 5; Journal ID: ISSN 2169-8287
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
59 BASIC BIOLOGICAL SCIENCES

Citation Formats

Davenport, K. W., Daligault, H. E., Minogue, T. D., Bishop-Lilly, K. A., Bruce, D. C., Chain, P. S., Coyne, S. R., Frey, K. G., Jaissle, J., Koroleva, G. I., Ladner, J. T., Palacios, G. F., Redden, C. L., Scholz, M. B., Teshima, H., and Johnson, S. L. Draft Genome Assembly of Delftia acidovorans Type Strain 2167. United States: N. p., 2014. Web. doi:10.1128/genomeA.00917-14.
Davenport, K. W., Daligault, H. E., Minogue, T. D., Bishop-Lilly, K. A., Bruce, D. C., Chain, P. S., Coyne, S. R., Frey, K. G., Jaissle, J., Koroleva, G. I., Ladner, J. T., Palacios, G. F., Redden, C. L., Scholz, M. B., Teshima, H., & Johnson, S. L. Draft Genome Assembly of Delftia acidovorans Type Strain 2167. United States. https://doi.org/10.1128/genomeA.00917-14
Davenport, K. W., Daligault, H. E., Minogue, T. D., Bishop-Lilly, K. A., Bruce, D. C., Chain, P. S., Coyne, S. R., Frey, K. G., Jaissle, J., Koroleva, G. I., Ladner, J. T., Palacios, G. F., Redden, C. L., Scholz, M. B., Teshima, H., and Johnson, S. L. Thu . "Draft Genome Assembly of Delftia acidovorans Type Strain 2167". United States. https://doi.org/10.1128/genomeA.00917-14. https://www.osti.gov/servlets/purl/1629333.
@article{osti_1629333,
title = {Draft Genome Assembly of Delftia acidovorans Type Strain 2167},
author = {Davenport, K. W. and Daligault, H. E. and Minogue, T. D. and Bishop-Lilly, K. A. and Bruce, D. C. and Chain, P. S. and Coyne, S. R. and Frey, K. G. and Jaissle, J. and Koroleva, G. I. and Ladner, J. T. and Palacios, G. F. and Redden, C. L. and Scholz, M. B. and Teshima, H. and Johnson, S. L.},
abstractNote = {The Delftia acidovorans 2167 (ATCC 15668, Delftia type strain) genome was sequenced into a 6-contig scaffolded assembly of 6.78-Mb. This environmental microbe, previously named to both the Comamonas and Pseudomonas genera, is an opportunistic pathogen and often the subject of phylogenetic placement debates.},
doi = {10.1128/genomeA.00917-14},
journal = {Genome Announcements},
number = 5,
volume = 2,
place = {United States},
year = {Thu Sep 04 00:00:00 EDT 2014},
month = {Thu Sep 04 00:00:00 EDT 2014}
}

Works referenced in this record:

Microbial diversity of landslide soils assessed by RFLP and SSCP fingerprints: Microbial fingerprint of landslide soil
journal, April 2014

  • Guida, Marco; Cannavacciuolo, Paolo Losanno; Cesarano, Mara
  • Journal of Applied Genetics, Vol. 55, Issue 3
  • DOI: 10.1007/s13353-014-0208-y

Delftia acidovorans Bacteremia in an Intravenous Drug Abuser
journal, February 2005


Genome sequencing in microfabricated high-density picolitre reactors
journal, July 2005

  • Margulies, Marcel; Egholm, Michael; Altman, William E.
  • Nature, Vol. 437, Issue 7057, p. 376-380
  • DOI: 10.1038/nature03959

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
journal, February 2008


Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment
journal, March 1998

  • Ewing, Brent; Hillier, LaDeana; Wendl, Michael C.
  • Genome Research, Vol. 8, Issue 3
  • DOI: 10.1101/gr.8.3.175

Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
journal, March 1998


Consed: A Graphical Tool for Sequence Finishing
journal, March 1998

  • Gordon, David; Abajian, Chris; Green, Phil
  • Genome Research, Vol. 8, Issue 3
  • DOI: 10.1101/gr.8.3.195

Bacteremia Caused by Comamonas kerstersii in a Patient with Diverticulosis
journal, December 2013

  • Opota, O.; Ney, B.; Zanetti, G.
  • Journal of Clinical Microbiology, Vol. 52, Issue 3
  • DOI: 10.1128/JCM.02942-13

ALLPATHS: De novo assembly of whole-genome shotgun microreads
journal, February 2008

  • Butler, J.; MacCallum, I.; Kleber, M.
  • Genome Research, Vol. 18, Issue 5
  • DOI: 10.1101/gr.7337908

Delftia acidovorans bacteremia caused by bacterial translocation after organophosphorus poisoning in an immunocompetent adult patient
journal, January 2013

  • Hagiya, Hideharu; Sugiyama, Junichi; Kuroe, Yasutoshi
  • Journal of Infection and Chemotherapy, Vol. 19, Issue 2
  • DOI: 10.1007/s10156-012-0472-x

Solexa Ltd
journal, June 2004