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Title: Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis

Abstract

Methyl coenzyme M reductase (MCR) is a complex enzyme that catalyzes the final step in biological methanogenesis. To better understand its assembly, the recombinant MCR from the thermophile Methanothermococcus okinawensis (rMCRok) was expressed in the mesophile Methanococcus maripaludis. The rMCRok was posttranslationally modified correctly and contained McrD and the unique nickel tetrapyrrole coenzyme F430. Subunits of the native M. maripaludis (MCRmar) were largely absent, suggesting that the recombinant enzyme was formed by an assembly of cotranscribed subunits. Strong support for this hypothesis was obtained by expressing a chimeric operon comprising the His-tagged mcrA from M. maripaludis and the mcrBDCG from M. okinawensis in M. maripaludis. The His-tagged purified rMCR then contained the M. maripaludis McrA and the M. okinawensis McrBDG. The present study prompted us to form a working model for MCR assembly, which can be further tested by the heterologous expression system established here.

Authors:
ORCiD logo [1];  [1];  [1];  [1];  [2];  [1];  [1];  [2];  [1]
  1. Univ. of Georgia, Athens, GA (United States)
  2. Auburn Univ., AL (United States)
Publication Date:
Research Org.:
Univ. of Georgia, Athens, GA (United States)
Sponsoring Org.:
USDOE Office of Science (SC), Basic Energy Sciences (BES); Natural Science Foundation of Jiangsu Province
OSTI Identifier:
1595760
Grant/Contract Number:  
SC0018028; BK20171266
Resource Type:
Accepted Manuscript
Journal Name:
Journal of Bacteriology
Additional Journal Information:
Journal Volume: 200; Journal Issue: 7; Journal ID: ISSN 0021-9193
Publisher:
American Society for Microbiology
Country of Publication:
United States
Language:
English
Subject:
03 NATURAL GAS; 09 BIOMASS FUELS; 59 BASIC BIOLOGICAL SCIENCES; 60 APPLIED LIFE SCIENCES; coenzyme F430; methyl coenzyme M reductase; posttranslational modification; Methanococcus; Methanothermococcus

Citation Formats

Lyu, Zhe, Chou, Chau-Wen, Shi, Hao, Wang, Liangliang, Ghebreab, Robel, Phillips, Dennis, Yan, Yajun, Duin, Evert C., and Whitman, William B. Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis. United States: N. p., 2018. Web. doi:10.1128/JB.00746-17.
Lyu, Zhe, Chou, Chau-Wen, Shi, Hao, Wang, Liangliang, Ghebreab, Robel, Phillips, Dennis, Yan, Yajun, Duin, Evert C., & Whitman, William B. Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis. United States. https://doi.org/10.1128/JB.00746-17
Lyu, Zhe, Chou, Chau-Wen, Shi, Hao, Wang, Liangliang, Ghebreab, Robel, Phillips, Dennis, Yan, Yajun, Duin, Evert C., and Whitman, William B. Tue . "Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis". United States. https://doi.org/10.1128/JB.00746-17. https://www.osti.gov/servlets/purl/1595760.
@article{osti_1595760,
title = {Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis},
author = {Lyu, Zhe and Chou, Chau-Wen and Shi, Hao and Wang, Liangliang and Ghebreab, Robel and Phillips, Dennis and Yan, Yajun and Duin, Evert C. and Whitman, William B.},
abstractNote = {Methyl coenzyme M reductase (MCR) is a complex enzyme that catalyzes the final step in biological methanogenesis. To better understand its assembly, the recombinant MCR from the thermophile Methanothermococcus okinawensis (rMCRok) was expressed in the mesophile Methanococcus maripaludis. The rMCRok was posttranslationally modified correctly and contained McrD and the unique nickel tetrapyrrole coenzyme F430. Subunits of the native M. maripaludis (MCRmar) were largely absent, suggesting that the recombinant enzyme was formed by an assembly of cotranscribed subunits. Strong support for this hypothesis was obtained by expressing a chimeric operon comprising the His-tagged mcrA from M. maripaludis and the mcrBDCG from M. okinawensis in M. maripaludis. The His-tagged purified rMCR then contained the M. maripaludis McrA and the M. okinawensis McrBDG. The present study prompted us to form a working model for MCR assembly, which can be further tested by the heterologous expression system established here.},
doi = {10.1128/JB.00746-17},
journal = {Journal of Bacteriology},
number = 7,
volume = 200,
place = {United States},
year = {Tue Jan 16 00:00:00 EST 2018},
month = {Tue Jan 16 00:00:00 EST 2018}
}

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Works referenced in this record:

Complete Genome Sequence of the Genetically Tractable Hydrogenotrophic Methanogen Methanococcus maripaludis
journal, October 2004


The Biosynthesis of Methylated Amino Acids in the Active Site Region of Methyl-coenzyme M Reductase
journal, February 2000

  • Selmer, Thorsten; Kahnt, Jörg; Goubeaud, Marcel
  • Journal of Biological Chemistry, Vol. 275, Issue 6
  • DOI: 10.1074/jbc.275.6.3755

Two genetically distinct methyl-coenzyme M reductases in Methanobacterium thermoautotrophicum strain Marburg and DeltaH
journal, December 1990


Elucidating the Process of Activation of Methyl-Coenzyme M Reductase
journal, April 2014

  • Prakash, D.; Wu, Y.; Suh, S. -J.
  • Journal of Bacteriology, Vol. 196, Issue 13
  • DOI: 10.1128/JB.01658-14

Metabolic, Phylogenetic, and Ecological Diversity of the Methanogenic Archaea
journal, March 2008

  • Liu, Yuchen; Whitman, William B.
  • Annals of the New York Academy of Sciences, Vol. 1125, Issue 1
  • DOI: 10.1196/annals.1419.019

Methanothermococcus okinawensis sp. nov., a thermophilic, methane-producing archaeon isolated from a Western Pacific deep-sea hydrothermal vent system.
journal, July 2002

  • Horikoshi, Koki; Takai, Ken; Inoue, Akira
  • International Journal of Systematic and Evolutionary Microbiology, Vol. 52, Issue 4
  • DOI: 10.1099/00207713-52-4-1089

Peptide and protein sequence analysis by electron transfer dissociation mass spectrometry
journal, June 2004

  • Syka, J. E. P.; Coon, J. J.; Schroeder, M. J.
  • Proceedings of the National Academy of Sciences, Vol. 101, Issue 26
  • DOI: 10.1073/pnas.0402700101

Physiology and Biochemistry of the Methane-Producing Archaea
book, January 2006


Comparison of three methyl-coenzyme M reductases from phylogenetically distant organisms: unusual amino acid modification, conservation and adaptation
journal, October 2000

  • Grabarse, Wolfgang; Mahlert, Felix; Shima, Seigo
  • Journal of Molecular Biology, Vol. 303, Issue 2
  • DOI: 10.1006/jmbi.2000.4136

The Wolfe cycle comes full circle
journal, September 2012


Purified Methyl-Coenzyme-M Reductase is Activated when the Enzyme-Bound Coenzyme F430 is Reduced to the Nickel(I) Oxidation State by Titanium(III) Citrate
journal, January 1997


Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Methanococcus maripaludis
journal, March 2013

  • Sarmiento, F.; Mrazek, J.; Whitman, W. B.
  • Proceedings of the National Academy of Sciences, Vol. 110, Issue 12
  • DOI: 10.1073/pnas.1220225110

On the mechanism of biological methane formation: structural evidence for conformational changes in methyl-coenzyme M reductase upon substrate binding
journal, May 2001

  • Grabarse, Wolfgang; Mahlert, Felix; Duin, Evert C.
  • Journal of Molecular Biology, Vol. 309, Issue 1
  • DOI: 10.1006/jmbi.2001.4647

Structure of a methyl-coenzyme M reductase from Black Sea mats that oxidize methane anaerobically
journal, November 2011

  • Shima, Seigo; Krueger, Martin; Weinert, Tobias
  • Nature, Vol. 481, Issue 7379
  • DOI: 10.1038/nature10663

Isolation and characterization of 22 mesophilic methanococci
journal, May 1986

  • Whitman, William B.; Shieh, Jersong; Sohn, Seehyang
  • Systematic and Applied Microbiology, Vol. 7, Issue 2-3, p. 235-240
  • DOI: 10.1016/S0723-2020(86)80012-1

Preincubation with cysteine prevents modification of sulfhydryl groups in proteins by unreacted acrylamide in a gel
journal, January 1992

  • Chiari, Marcella; Righetti, Pier Giorgio; Negri, Armando
  • Electrophoresis, Vol. 13, Issue 1
  • DOI: 10.1002/elps.11501301193

Reversing methanogenesis to capture methane for liquid biofuel precursors
journal, January 2016

  • Soo, Valerie W. C.; McAnulty, Michael J.; Tripathi, Arti
  • Microbial Cell Factories, Vol. 15, Issue 1
  • DOI: 10.1186/s12934-015-0397-z

The biosynthetic pathway of coenzyme F430 in methanogenic and methanotrophic archaea
journal, October 2016


MTML-msBayes: Approximate Bayesian comparative phylogeographic inference from multiple taxa and multiple loci with rate heterogeneity
journal, January 2011


Engineering the Autotroph Methanococcus maripaludis for Geraniol Production
journal, February 2016


Anaerobic Oxidation of Methane: Progress with an Unknown Process
journal, October 2009


Cloning and characterization of the methyl coenzyme M reductase genes from Methanobacterium thermoautotrophicum.
journal, January 1988


Shuttle Vector System for Methanococcus maripaludis with Improved Transformation Efficiency
journal, February 2011

  • Walters, Alison D.; Smith, Sarah E.; Chong, James P. J.
  • Applied and Environmental Microbiology, Vol. 77, Issue 7
  • DOI: 10.1128/AEM.02919-10