Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover
Abstract
Environmental transition zones are associated with geochemical gradients that overcome energy limitations to microbial metabolism, resulting in biogeochemical hot spots and moments. Riverine systems where groundwater mixes with surface water (the hyporheic zone) are spatially complex and temporally dynamic, making development of predictive models challenging. Spatial and temporal variations in hyporheic zone microbial communities are a key, but understudied, component of riverine biogeochemical function. To investigate the coupling among groundwater-surface water mixing, microbial communities, and biogeochemistry we applied ecological theory, aqueous biogeochemistry, DNA sequencing, and ultra-high resolution organic carbon profiling to field samples collected across times and locations representing a broad range of mixing conditions. Mixing of groundwater and surface water resulted in a shift from transport-driven stochastic dynamics to a deterministic microbial structure associated with elevated biogeochemical rates. While the dynamics of the hyporheic make predictive modeling a challenge, we provide new knowledge that can improve the tractability of such models.
- Authors:
-
- Pacific Northwest National Lab. (PNNL), Richland, WA (United States)
- The Ohio State Univ., Columbus, OH (United States)
- Publication Date:
- Research Org.:
- Pacific Northwest National Laboratory (PNNL), Richland, WA (United States)
- Sponsoring Org.:
- USDOE
- OSTI Identifier:
- 1253864
- Report Number(s):
- PNNL-SA-111962
Journal ID: ISSN 2041-1723; ncomms11237
- Grant/Contract Number:
- AC05-76RL01830
- Resource Type:
- Accepted Manuscript
- Journal Name:
- Nature Communications
- Additional Journal Information:
- Journal Volume: 7; Journal ID: ISSN 2041-1723
- Publisher:
- Nature Publishing Group
- Country of Publication:
- United States
- Language:
- English
- Subject:
- 54 ENVIRONMENTAL SCIENCES; biogeochemical hotspot; deterministic selection; ecological drift; ecological null model; FTICR mass spectrometry; Hanford 300 Area; hyporheic zone; mixing model; organic carbon; phylogenetic beta-diversity; subsurface biogeochemistry; subsurface microbiology
Citation Formats
Stegen, James C., Fredrickson, James K., Wilkins, Michael J., Konopka, Allan E., Nelson, William C., Arntzen, Evan V., Chrisler, William B., Chu, Rosalie K., Danczak, Robert E., Fansler, Sarah J., Kennedy, David W., Resch, Charles T., and Tfaily, Malak. Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover. United States: N. p., 2016.
Web. doi:10.1038/ncomms11237.
Stegen, James C., Fredrickson, James K., Wilkins, Michael J., Konopka, Allan E., Nelson, William C., Arntzen, Evan V., Chrisler, William B., Chu, Rosalie K., Danczak, Robert E., Fansler, Sarah J., Kennedy, David W., Resch, Charles T., & Tfaily, Malak. Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover. United States. https://doi.org/10.1038/ncomms11237
Stegen, James C., Fredrickson, James K., Wilkins, Michael J., Konopka, Allan E., Nelson, William C., Arntzen, Evan V., Chrisler, William B., Chu, Rosalie K., Danczak, Robert E., Fansler, Sarah J., Kennedy, David W., Resch, Charles T., and Tfaily, Malak. Thu .
"Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover". United States. https://doi.org/10.1038/ncomms11237. https://www.osti.gov/servlets/purl/1253864.
@article{osti_1253864,
title = {Groundwater–surface water mixing shifts ecological assembly processes and stimulates organic carbon turnover},
author = {Stegen, James C. and Fredrickson, James K. and Wilkins, Michael J. and Konopka, Allan E. and Nelson, William C. and Arntzen, Evan V. and Chrisler, William B. and Chu, Rosalie K. and Danczak, Robert E. and Fansler, Sarah J. and Kennedy, David W. and Resch, Charles T. and Tfaily, Malak},
abstractNote = {Environmental transition zones are associated with geochemical gradients that overcome energy limitations to microbial metabolism, resulting in biogeochemical hot spots and moments. Riverine systems where groundwater mixes with surface water (the hyporheic zone) are spatially complex and temporally dynamic, making development of predictive models challenging. Spatial and temporal variations in hyporheic zone microbial communities are a key, but understudied, component of riverine biogeochemical function. To investigate the coupling among groundwater-surface water mixing, microbial communities, and biogeochemistry we applied ecological theory, aqueous biogeochemistry, DNA sequencing, and ultra-high resolution organic carbon profiling to field samples collected across times and locations representing a broad range of mixing conditions. Mixing of groundwater and surface water resulted in a shift from transport-driven stochastic dynamics to a deterministic microbial structure associated with elevated biogeochemical rates. While the dynamics of the hyporheic make predictive modeling a challenge, we provide new knowledge that can improve the tractability of such models.},
doi = {10.1038/ncomms11237},
journal = {Nature Communications},
number = ,
volume = 7,
place = {United States},
year = {Thu Apr 07 00:00:00 EDT 2016},
month = {Thu Apr 07 00:00:00 EDT 2016}
}
Free Publicly Available Full Text
Publisher's Version of Record
Other availability
Search WorldCat to find libraries that may hold this journal
Cited by: 236 works
Citation information provided by
Web of Science
Web of Science
Save to My Library
You must Sign In or Create an Account in order to save documents to your library.
Works referenced in this record:
Simplifying complexity: a review of complexity theory
journal, August 2001
- Manson, Steven M.
- Geoforum, Vol. 32, Issue 3
Estimating and mapping ecological processes influencing microbial community assembly
journal, May 2015
- Stegen, James C.; Lin, Xueju; Fredrickson, Jim K.
- Frontiers in Microbiology, Vol. 6
Effect of enhanced manganese oxidation in the hyporheic zone on basin-scale geochemical mass balance
journal, April 1998
- Harvey, Judson W.; Fuller, Christopher C.
- Water Resources Research, Vol. 34, Issue 4
Microbial degradation of terrigenous dissolved organic matter and potential consequences for carbon cycling in brown-water streams
journal, May 2014
- Fasching, Christina; Behounek, Barbara; Singer, Gabriel A.
- Scientific Reports, Vol. 4, Issue 1
Comparative study on humic substances isolated in thermal groundwaters from deep aquifers below 700 m
journal, January 2012
- KOV^|^Aacute;CS, K.; G^|^Aacute;SP^|^Aacute;R, A.; SAJG^|^Oacute;, Cs.
- GEOCHEMICAL JOURNAL, Vol. 46, Issue 3
Bacterial community dynamics in the hyporheic zone of an intermittent stream
journal, December 2011
- Febria, Catherine M.; Beddoes, Paul; Fulthorpe, Roberta R.
- The ISME Journal, Vol. 6, Issue 5
Metabolic and structural response of hyporheic microbial communities to variations in supply of dissolved organic matter
journal, July 2003
- Findlay, Stuart E. G.; Sinsabaugh, Robert L.; Sobczak, William V.
- Limnology and Oceanography, Vol. 48, Issue 4
Hydrogeomorphology of the hyporheic zone: Stream solute and fine particle interactions with a dynamic streambed: DYNAMIC HYPORHEIC-GEOMORPHIC INTERACTIONS
journal, October 2012
- Harvey, J. W.; Drummond, J. D.; Martin, R. L.
- Journal of Geophysical Research: Biogeosciences, Vol. 117, Issue G4
The Diversity of the Limnohabitans Genus, an Important Group of Freshwater Bacterioplankton, by Characterization of 35 Isolated Strains
journal, March 2013
- Kasalický, Vojtěch; Jezbera, Jan; Hahn, Martin W.
- PLoS ONE, Vol. 8, Issue 3
Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
journal, February 2013
- Wang, Jianjun; Shen, Ji; Wu, Yucheng
- The ISME Journal, Vol. 7, Issue 7
Stochastic and deterministic assembly processes in subsurface microbial communities
journal, March 2012
- Stegen, James C.; Lin, Xueju; Konopka, Allan E.
- The ISME Journal, Vol. 6, Issue 9
Differentiated free-living and sediment-attached bacterial community structure inside and outside denitrification hotspots in the river–groundwater interface
journal, September 2007
- Iribar, Amaia; Sánchez-Pérez, José Miguel; Lyautey, Emilie
- Hydrobiologia, Vol. 598, Issue 1
Rainfall-induced carbon dioxide pulses result from sequential resuscitation of phylogenetically clustered microbial groups
journal, June 2012
- Placella, S. A.; Brodie, E. L.; Firestone, M. K.
- Proceedings of the National Academy of Sciences, Vol. 109, Issue 27
Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample
journal, June 2010
- Caporaso, J. G.; Lauber, C. L.; Walters, W. A.
- Proceedings of the National Academy of Sciences, Vol. 108, Issue Supplement_1
Review of mechanisms and quantification of priming effects
journal, October 2000
- Kuzyakov, Y.; Friedel, J. K.; Stahr, K.
- Soil Biology and Biochemistry, Vol. 32, Issue 11-12
A Proposed Mechanism for the Pulse in Carbon Dioxide Production Commonly Observed Following the Rapid Rewetting of a Dry Soil
journal, May 2003
- Fierer, Noah; Schimel, Joshua P.
- Soil Science Society of America Journal, Vol. 67, Issue 3
The role of micro‐organisms in the ecological connectivity of running waters
journal, November 1998
- Pusch, M.; Fiebig, D.; Brettar, I.
- Freshwater Biology, Vol. 40, Issue 3
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
journal, March 2012
- Lin, Xueju; McKinley, James; Resch, Charles T.
- The ISME Journal, Vol. 6, Issue 9
Riparian biogeochemical hot moments induced by stream fluctuations: HYDROLOGICALLY DRIVEN RIPARIAN BUFFERING EFFECTS
journal, September 2012
- Gu, Chuanhui; Anderson, William; Maggi, Federico
- Water Resources Research, Vol. 48, Issue 9
Dissolved organic carbon lability increases with water residence time in the alluvial aquifer of a river floodplain ecosystem: Aquifer dissolved organic carbon
journal, April 2015
- Helton, Ashley M.; Wright, Meredith S.; Bernhardt, Emily S.
- Journal of Geophysical Research: Biogeosciences, Vol. 120, Issue 4
Nutrient cycling in bedform induced hyporheic zones
journal, May 2012
- Bardini, L.; Boano, F.; Cardenas, M. B.
- Geochimica et Cosmochimica Acta, Vol. 84
Denitrification in a nitrogen-limited stream ecosystem
journal, May 1996
- Holmes, Robert M.; Jones, Jeremy B.; Fisher, Stuart G.
- Biogeochemistry, Vol. 33, Issue 2
Characterizing seasonal changes in physicochemistry and bacterial community composition in hyporheic sediments
journal, July 2009
- Febria, C. M.; Fulthorpe, R. R.; Williams, D. D.
- Hydrobiologia, Vol. 647, Issue 1
Seasonal Dynamics of Shallow-Hyporheic-Zone Microbial Community Structure along a Heavy-Metal Contamination Gradient
journal, April 2004
- Feris, K. P.; Ramsey, P. W.; Frazar, C.
- Applied and Environmental Microbiology, Vol. 70, Issue 4
Effect of Rapidly Changing River Stage on Uranium Flux through the Hyporheic Zone
journal, November 2007
- Fritz, Brad G.; Arntzen, Evan V.
- Ground Water, Vol. 45, Issue 6
Variation in Bioavailability of Dissolved Organic Carbon Among Stream Hyporheic Flowpaths
journal, November 2002
- Sobczak, William V.; Findlay, Stuart
- Ecology, Vol. 83, Issue 11
Organic matter availability during pre- and post-drought periods in a Mediterranean stream
book, January 2010
- Ylla, Irene; Sanpera-Calbet, Isis; Vázquez, Eusebi
- Global Change and River Ecosystems—Implications for Structure, Function and Ecosystem Services
QIIME allows analysis of high-throughput community sequencing data
journal, April 2010
- Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
- Nature Methods, Vol. 7, Issue 5
A physical explanation for the development of redox microzones in hyporheic flow
journal, June 2015
- Briggs, Martin A.; Day‐Lewis, Frederick D.; Zarnetske, Jay P.
- Geophysical Research Letters, Vol. 42, Issue 11
Microbial respiration within a floodplain aquifer of a large gravel-bed river
journal, February 2002
- Craft, James A.; Stanford, Jack A.; Pusch, Martin
- Freshwater Biology, Vol. 47, Issue 2
Effect of Rapidly Changing River Stage on Uranium Flux through the Hyporheic Zone
journal, November 2007
- Fritz, Brad G.; Arntzen, Evan V.
- Ground Water, Vol. 45, Issue 6
Influence of dry–wet cycles on the interrelationship between aggregate, particulate organic matter, and microbial community dynamics
journal, October 2001
- Denef, Karolien; Six, Johan; Bossuyt, Heleen
- Soil Biology and Biochemistry, Vol. 33, Issue 12-13
A River's Liver – Microbial Processes within the Hyporheic Zone of a Large Lowland River
journal, November 2005
- Fischer, Helmut; Kloep, Frank; Wilzcek, Sabine
- Biogeochemistry, Vol. 76, Issue 2
Environmental Controls on the Activity of Aquifer Microbial Communities in the 300 Area of the Hanford Site
journal, September 2013
- Konopka, Allan; Plymale, Andrew E.; Carvajal, Denny A.
- Microbial Ecology, Vol. 66, Issue 4
Exploration of riffle-scale interactions between abiotic variables and microbial assemblages in the hyporheic zone
journal, February 2005
- Sliva, Lucie; Williams, D. Dudley
- Canadian Journal of Fisheries and Aquatic Sciences, Vol. 62, Issue 2
How air-drying and rewetting modify soil organic matter characteristics: An assessment to improve data interpretation and inference
journal, January 2015
- Kaiser, Michael; Kleber, Markus; Berhe, Asmeret Asefaw
- Soil Biology and Biochemistry, Vol. 80
Quantifying community assembly processes and identifying features that impose them
journal, June 2013
- Stegen, James C.; Lin, Xueju; Fredrickson, Jim K.
- The ISME Journal, Vol. 7, Issue 11
QIIME allows analysis of high-throughput community sequencing data
journal, April 2010
- Caporaso, J. Gregory; Kuczynski, Justin; Stombaugh, Jesse
- Nature Methods, Vol. 7, Issue 5
Metabolism of streamwater dissolved organic carbon in the shallow hyporheic zone
journal, November 1993
- Findlay, Stuart; Strayer, David; Goumbala, Cheikh
- Limnology and Oceanography, Vol. 38, Issue 7
Hyporheic zone denitrification: Controls on effective reaction depth and contribution to whole-stream mass balance: Scaling hyporheic flow controls on stream denitrification
journal, October 2013
- Harvey, Judson W.; Böhlke, J. K.; Voytek, Mary A.
- Water Resources Research, Vol. 49, Issue 10
The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes
journal, April 2015
- Martínez, Inés; Stegen, James C.; Maldonado-Gómez, Maria X.
- Cell Reports, Vol. 11, Issue 4
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession
journal, March 2015
- Dini-Andreote, Francisco; Stegen, James C.; van Elsas, Jan Dirk
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 11
Soil metabolic pulses: water, substrate, and biological regulation
journal, May 2012
- Jenerette, G. Darrel; Chatterjee, Amitava
- Ecology, Vol. 93, Issue 5
Organic matter availability during pre- and post-drought periods in a Mediterranean stream
journal, March 2010
- Ylla, Irene; Sanpera-Calbet, Isis; Vázquez, Eusebi
- Hydrobiologia, Vol. 657, Issue 1
Mineralisation of plant nitrogen following alternate wet and dry conditions
journal, February 1964
- Birch, H. F.
- Plant and Soil, Vol. 20, Issue 1
Bacterial community dynamics in the hyporheic zone of an intermittent stream
journal, December 2011
- Febria, Catherine M.; Beddoes, Paul; Fulthorpe, Roberta R.
- The ISME Journal, Vol. 6, Issue 5
Habitat Heterogeneity and Associated Microbial Community Structure in a Small-Scale Floodplain Hyporheic Flow Path
journal, May 2009
- Lowell, Jennifer L.; Gordon, Nathan; Engstrom, Dale
- Microbial Ecology, Vol. 58, Issue 3
A Proposed Mechanism for the Pulse in Carbon Dioxide Production Commonly Observed Following the Rapid Rewetting of a Dry Soil
journal, May 2003
- Fierer, Noah; Schimel, Joshua P.
- Soil Science Society of America Journal, Vol. 67, Issue 3
Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria 'that rule the waves' (LD12)
text, January 2011
- Salcher, M. M.; Pernthaler, J.; Posch, T.
- Nature Publishing Group
Influence of calcite on uranium(VI) reactive transport in the groundwater–river mixing zone
journal, January 2014
- Ma, Rui; Liu, Chongxuan; Greskowiak, Janek
- Journal of Contaminant Hydrology, Vol. 156
Cumulative respiration in two drying and rewetting cycles depends on the number and distribution of moist days
journal, April 2015
- Shi, Andong; Yan, Nan; Marschner, Petra
- Geoderma, Vol. 243-244
Characterizing seasonal changes in physicochemistry and bacterial community composition in hyporheic sediments
journal, July 2009
- Febria, C. M.; Fulthorpe, R. R.; Williams, D. D.
- Hydrobiologia, Vol. 647, Issue 1
Differences in Hyporheic-Zone Microbial Community Structure along a Heavy-Metal Contamination Gradient
journal, September 2003
- Feris, K.; Ramsey, P.; Frazar, C.
- Applied and Environmental Microbiology, Vol. 69, Issue 9
Microbial biomass response to a rapid increase in water potential when dry soil is wetted
journal, January 1987
- Kieft, Thomas L.; soroker, Edith; firestone, Mary K.
- Soil Biology and Biochemistry, Vol. 19, Issue 2
Influence of hyporheic zone characteristics on the structure and activity of microbial assemblages
journal, September 2013
- Nogaro, Geraldine; Datry, Thibault; Mermillod-Blondin, Florian
- Freshwater Biology, Vol. 58, Issue 12
Unifying soil respiration pulses, inhibition, and temperature hysteresis through dynamics of labile soil carbon and O 2 : Soil C and O2 regulate soil respiration
journal, April 2014
- Oikawa, P. Y.; Grantz, D. A.; Chatterjee, A.
- Journal of Geophysical Research: Biogeosciences, Vol. 119, Issue 4
Inferring Ecological Processes from Taxonomic, Phylogenetic and Functional Trait β-Diversity
text, January 2011
- C., Stegen, James; H., Hurlbert, Allen
- The University of North Carolina at Chapel Hill University Libraries
Soil enzymes in a changing environment: Current knowledge and future directions
journal, March 2013
- Burns, Richard G.; DeForest, Jared L.; Marxsen, Jürgen
- Soil Biology and Biochemistry, Vol. 58
Soil metabolic pulses: water, substrate, and biological regulation
journal, May 2012
- Jenerette, G. Darrel; Chatterjee, Amitava
- Ecology, Vol. 93, Issue 5
Impact of instrument and experiment parameters on reproducibility of ultrahigh resolution ESI FT-ICR mass spectra of natural organic matter
journal, August 2010
- Kido Soule, Melissa C.; Longnecker, Krista; Giovannoni, Stephen J.
- Organic Geochemistry, Vol. 41, Issue 8
Effects of fluctuating river flow on groundwater/surface water mixing in the hyporheic zone of a regulated, large cobble bed river
journal, January 2006
- Arntzen, Evan V.; Geist, David R.; Dresel, P. Evan
- River Research and Applications, Vol. 22, Issue 8
The role of organisms in hyporheic processes: gaps in current knowledge, needs for future research and applications
journal, January 2012
- Marmonier, P.; Archambaud, G.; Belaidi, N.
- Annales de Limnologie - International Journal of Limnology, Vol. 48, Issue 3
Soil Microsites as a Source of Denitrification Variability1
journal, January 1987
- Parkin, Timothy B.
- Soil Science Society of America Journal, Vol. 51, Issue 5
Stochastic and deterministic assembly processes in subsurface microbial communities
journal, March 2012
- Stegen, James C.; Lin, Xueju; Konopka, Allan E.
- The ISME Journal, Vol. 6, Issue 9
Inferring Ecological Processes from Taxonomic, Phylogenetic and Functional Trait β-Diversity
journal, June 2011
- Stegen, James C.; Hurlbert, Allen H.
- PLoS ONE, Vol. 6, Issue 6
Spatial and temporal dynamics of the microbial community in the Hanford unconfined aquifer
journal, March 2012
- Lin, Xueju; McKinley, James; Resch, Charles T.
- The ISME Journal, Vol. 6, Issue 9
Perspectives and predictions on the microbial ecology of the hyporheic zone
journal, February 1999
- Storey, R. G.; Fulthorpe, R. R.; Williams, D. D.
- Freshwater Biology, Vol. 41, Issue 1
Phylogenetic beta diversity in bacterial assemblages across ecosystems: deterministic versus stochastic processes
journal, February 2013
- Wang, Jianjun; Shen, Ji; Wu, Yucheng
- The ISME Journal, Vol. 7, Issue 7
The Diversity of the Limnohabitans Genus, an Important Group of Freshwater Bacterioplankton, by Characterization of 35 Isolated Strains
journal, March 2013
- Kasalický, Vojtěch; Jezbera, Jan; Hahn, Martin W.
- PLoS ONE, Vol. 8, Issue 3
Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession
journal, March 2015
- Dini-Andreote, Francisco; Stegen, James C.; van Elsas, Jan Dirk
- Proceedings of the National Academy of Sciences, Vol. 112, Issue 11
Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)
journal, March 2011
- Salcher, Michaela M.; Pernthaler, Jakob; Posch, Thomas
- The ISME Journal, Vol. 5, Issue 8
Contribution of the Hyporheic Zone to Ecosystem Metabolism in a Prealpine Gravel-Bed-River
journal, December 1997
- Naegeli, Markus W.; Uehlinger, Urs
- Journal of the North American Benthological Society, Vol. 16, Issue 4
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
journal, March 2012
- Caporaso, J. Gregory; Lauber, Christian L.; Walters, William A.
- The ISME Journal, Vol. 6, Issue 8
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
Base-Calling of Automated Sequencer Traces Using Phred. II. Error Probabilities
journal, March 1998
- Ewing, Brent; Green, Phil
- Genome Research, Vol. 8, Issue 3
The Gut Microbiota of Rural Papua New Guineans: Composition, Diversity Patterns, and Ecological Processes
journal, April 2015
- Martínez, Inés; Stegen, James C.; Maldonado-Gómez, Maria X.
- Cell Reports, Vol. 11, Issue 4
Biogeochemical Hot Spots and Hot Moments at the Interface of Terrestrial and Aquatic Ecosystems
journal, June 2003
- McClain, Michael E.; Boyer, Elizabeth W.; Dent, C. Lisa
- Ecosystems, Vol. 6, Issue 4
A phylogenomic analysis of the Actinomycetales mce operons
journal, February 2007
- Casali, Nicola; Riley, Lee W.
- BMC Genomics, Vol. 8, Issue 1
Pollutant attenuation at the groundwater–surface water interface: A classification scheme and statistical analysis using national-scale nitrate data
journal, May 2009
- Smith, J. W. N.; Surridge, B. W. J.; Haxton, T. H.
- Journal of Hydrology, Vol. 369, Issue 3-4
Determining Rates of Change and Evaluating Group-Level Resiliency Differences in Hyporheic Microbial Communities in Response to Fluvial Heavy-Metal Deposition
journal, August 2004
- Feris, K. P.; Ramsey, P. W.; Rillig, M.
- Applied and Environmental Microbiology, Vol. 70, Issue 8
Exploration of riffle-scale interactions between abiotic variables and microbial assemblages in the hyporheic zone
journal, February 2005
- Sliva, Lucie; Williams, D. Dudley
- Canadian Journal of Fisheries and Aquatic Sciences, Vol. 62, Issue 2
Hyporheic flow and transport processes: Mechanisms, models, and biogeochemical implications: HYPORHEIC FLOW AND TRANSPORT PROCESSES
journal, October 2014
- Boano, F.; Harvey, J. W.; Marion, A.
- Reviews of Geophysics, Vol. 52, Issue 4
When structure means conservation: Effect of aggregate structure in controlling microbial responses to rewetting events
journal, January 2012
- Navarro-García, Federico; Casermeiro, Miguel Ángel; Schimel, Joshua P.
- Soil Biology and Biochemistry, Vol. 44, Issue 1
Community respiration in hyporheic sediments of a mountain stream (Steina, Black Forest)
journal, March 1994
- Pusch, Martin; Schwoerbel, Jürgen
- Archiv für Hydrobiologie, Vol. 130, Issue 1
Microbial Assemblages and Production in Alluvial Aquifers of the Flathead River, Montana, USA
journal, December 1998
- Ellis, Bonnie K.; Stanford, Jack A.; Ward, James V.
- Journal of the North American Benthological Society, Vol. 17, Issue 4
Influence of calcite on uranium(VI) reactive transport in the groundwater–river mixing zone
journal, January 2014
- Ma, Rui; Liu, Chongxuan; Greskowiak, Janek
- Journal of Contaminant Hydrology, Vol. 156
Inter-disciplinary perspectives on processes in the hyporheic zone
journal, November 2010
- Krause, S.; Hannah, D. M.; Fleckenstein, J. H.
- Ecohydrology, Vol. 4, Issue 4
Habitat Heterogeneity and Associated Microbial Community Structure in a Small-Scale Floodplain Hyporheic Flow Path
journal, May 2009
- Lowell, Jennifer L.; Gordon, Nathan; Engstrom, Dale
- Microbial Ecology, Vol. 58, Issue 3
A Proposed Mechanism for the Pulse in Carbon Dioxide Production Commonly Observed Following the Rapid Rewetting of a Dry Soil
journal, January 2003
- Fierer, Noah; Schimel, Joshua P.
- Soil Science Society of America Journal, Vol. 67, Issue 3
Optimization of DNA extraction for quantitative marine bacterioplankton community analysis: DNA extraction from bacterioplankton
journal, November 2004
- Boström, Kjärstin H.; Simu, Karin; Hagström, Åke
- Limnology and Oceanography: Methods, Vol. 2, Issue 11
Distribution of microbial biomass and activity of extracellular enzymes in a hardwood forest soil reflect soil moisture content
journal, October 2010
- Baldrian, Petr; Merhautová, Věra; Petránková, Mirka
- Applied Soil Ecology, Vol. 46, Issue 2
Tannins and terpenoids as major precursors of Suwannee River fulvic acid
report, January 2004
- Leenheer, Jerry A.; Rostad, Colleen E.
Localized zones of denitrification in a floodplain aquifer in southern Wisconsin, USA
journal, October 2010
- Craig, Laura; Bahr, Jean M.; Roden, Eric E.
- Hydrogeology Journal, Vol. 18, Issue 8
The Functional Significance of the Hyporheic zone in Streams and Rivers
journal, November 1998
- Boulton, Andrew J.; Findlay, Stuart; Marmonier, Pierre
- Annual Review of Ecology and Systematics, Vol. 29, Issue 1
A new habitat of subsurface waters: the hyporheic biotope
journal, April 2010
- Orghidan, Traian
- Fundamental and Applied Limnology / Archiv für Hydrobiologie, Vol. 176, Issue 4
Wave-driven porewater and solute circulation through rippled elastic sediment under highly transient forcing: Porewater circulation in ripples under turbulent oscillating flows
journal, February 2011
- Cardenas, M. Bayani; Jiang, Houshuo
- Limnology and Oceanography: Fluids and Environments, Vol. 1, Issue 1
Search and clustering orders of magnitude faster than BLAST
journal, August 2010
- Edgar, Robert C.
- Bioinformatics, Vol. 26, Issue 19, p. 2460-2461
Enhanced removal of groundwater-borne nitrate in heterogeneous aquatic sediments
journal, January 2015
- Sawyer, A. H.
- Geophysical Research Letters, Vol. 42, Issue 2
Seasonal bloom dynamics and ecophysiology of the freshwater sister clade of SAR11 bacteria ‘that rule the waves’ (LD12)
journal, March 2011
- Salcher, Michaela M.; Pernthaler, Jakob; Posch, Thomas
- The ISME Journal, Vol. 5, Issue 8
Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms
journal, March 2012
- Caporaso, J. Gregory; Lauber, Christian L.; Walters, William A.
- The ISME Journal, Vol. 6, Issue 8
Quantifying community assembly processes and identifying features that impose them
journal, June 2013
- Stegen, James C.; Lin, Xueju; Fredrickson, Jim K.
- The ISME Journal, Vol. 7, Issue 11
The role of organisms in hyporheic processes: gaps in current knowledge, needs for future research and applications
journal, January 2012
- Marmonier, P.; Archambaud, G.; Belaidi, N.
- Annales de Limnologie - International Journal of Limnology, Vol. 48, Issue 3
Community respiration in hyporheic sediments of a mountain stream (Steina, Black Forest)
journal, March 1994
- Pusch, Martin; Schwoerbel, Jürgen
- Archiv für Hydrobiologie, Vol. 130, Issue 1
Works referencing / citing this record:
Application of the microbial community coalescence concept to riverine networks
text, January 2018
- Mansour, India; Heppell, Catherine M.; Ryo, Masahiro
- Freie Universität Berlin
Assessing the effect of flood restoration on surface–subsurface interactions in Rohrschollen Island (Upper Rhine river – France) using integrated hydrological modeling and thermal infrared imaging
journal, January 2019
- Jeannot, Benjamin; Weill, Sylvain; Eschbach, David
- Hydrology and Earth System Sciences, Vol. 23, Issue 1
Publisher Correction: Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology
journal, March 2018
- Stegen, James C.; Johnson, Tim; Fredrickson, James K.
- Nature Communications, Vol. 9, Issue 1
A multirate mass transfer model to represent the interaction of multicomponent biogeochemical processes between surface water and hyporheic zones (SWAT-MRMT-R 1.0)
posted_content, January 2020
- Fang, Yilin; Chen, Xingyuan; Gomez velez, Jesus
Influences of organic carbon speciation on hyporheic corridor biogeochemistry and microbial ecology
journal, February 2018
- Stegen, James C.; Johnson, Tim; Fredrickson, James K.
- Nature Communications, Vol. 9, Issue 1
Effect of particle size and heterogeneity on sediment biofilm metabolism and nutrient uptake scaled using two approaches
journal, March 2018
- Parker, Samuel P.; Bowden, William B.; Flinn, Michael B.
- Ecosphere, Vol. 9, Issue 3
Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
journal, November 2018
- Graham, Emily B.; Crump, Alex R.; Kennedy, David W.
- Science of The Total Environment, Vol. 642
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater
journal, May 2018
- Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya
- Geomicrobiology Journal, Vol. 35, Issue 9
At the Nexus of History, Ecology, and Hydrobiogeochemistry: Improved Predictions across Scales through Integration
journal, April 2018
- Stegen, James C.
- mSystems, Vol. 3, Issue 2
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater
text, January 2018
- Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya
- Taylor & Francis
Niche and Neutrality Work Differently in Microbial Communities in Fluidic and Non-fluidic Ecosystems
journal, September 2019
- Wang, Lixiao; Han, Maozhen; Li, Xi
- Microbial Ecology, Vol. 79, Issue 3
Deterministic and stochastic processes driving the shift in the prokaryotic community composition in wastewater treatment plants of a coastal Chinese city
journal, October 2019
- Hou, Liyuan; Mulla, Sikandar I.; Niño-Garcia, Juan Pablo
- Applied Microbiology and Biotechnology, Vol. 103, Issue 21-22
Impact of hydrologic boundaries on microbial planktonic and biofilm communities in shallow terrestrial subsurface environments
journal, September 2018
- Smith, H. J.; Zelaya, A. J.; De León, K. B.
- FEMS Microbiology Ecology, Vol. 94, Issue 12
Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers
journal, October 2019
- Fillinger, Lucas; Hug, Katrin; Griebler, Christian
- FEMS Microbiology Ecology, Vol. 95, Issue 11
Assessing the effect of flood restoration on surface-subsurface interactions in Rohrschollen Island (Upper Rhine River – France) using integrated hydrological modeling and thermal infrared imaging
journal, September 2018
- Jeannot, Bemjamin; Weill, Sylvain; Eschbach, David
- Hydrology and Earth systems Sciences Discussions
Seasonal Mixing-Driven System in Estuarine–Coastal Zone Triggers an Ecological Shift in Bacterial Assemblages Involved in Phytoplankton-Derived DMSP Degradation
journal, May 2019
- Han, Dukki; Kang, Hee Yoon; Kang, Chang-Keun
- Microbial Ecology, Vol. 79, Issue 1
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales
journal, October 2018
- Li, Hong-Yi; Wang, Hang; Wang, Hai-Tiao
- Microbiome, Vol. 6, Issue 1
Key role of streambed moisture and flash storms for microbial resistance and resilience to long‐term drought
journal, December 2018
- Gionchetta, Giulia; Oliva, Francesc; Menéndez, Margarita
- Freshwater Biology
Assessment of Microbial Community Dynamics in River Bank Filtrate Using High-Throughput Sequencing and Flow Cytometry
journal, November 2018
- Fiedler, Christina J.; Schönher, Christoph; Proksch, Philipp
- Frontiers in Microbiology, Vol. 9
Hydrological pulses and burning of dissolved organic carbon by stream respiration: Hydrological pulses and stream respiration
journal, October 2018
- Demars, Benoît O. L.
- Limnology and Oceanography, Vol. 64, Issue 1
The chemodiversity of paddy soil dissolved organic matter correlates with microbial community at continental scales
journal, October 2018
- Li, Hong-Yi; Wang, Hang; Wang, Hai-Tiao
- Microbiome, Vol. 6, Issue 1
Deterministic influences exceed dispersal effects on hydrologically-connected microbiomes: Deterministic assembly of hyporheic microbiomes
journal, March 2017
- Graham, Emily B.; Crump, Alex R.; Resch, Charles T.
- Environmental Microbiology, Vol. 19, Issue 4
The effect of unsteady streamflow and stream-groundwater interactions on oxygen consumption in a sandy streambed
journal, December 2019
- Galloway, Jason; Fox, Aryeh; Lewandowski, Jörg
- Scientific Reports, Vol. 9, Issue 1
Evidence for Microbial Mediated NO3− Cycling Within Floodplain Sediments During Groundwater Fluctuations
journal, July 2019
- Bouskill, Nicholas J.; Conrad, Mark E.; Bill, Markus
- Frontiers in Earth Science, Vol. 7
Profiling the microbial community structure and functional diversity of a dam-regulated river undergoing gravel bar restoration
journal, January 2020
- Serrana, Joeselle M.; Li, Bin; Sumi, Tetsuya
- Freshwater Biology
Two key features influencing community assembly processes at regional scale: Initial state and degree of change in environmental conditions
journal, November 2018
- Feng, Youzhi; Chen, Ruirui; Stegen, James C.
- Molecular Ecology, Vol. 27, Issue 24
Profiling the microbial community structure and functional diversity of a dam-regulated river undergoing gravel bar restoration
journal, January 2020
- Serrana, Joeselle M.; Li, Bin; Sumi, Tetsuya
- Freshwater Biology
In-situ microbial colonization and its potential contribution on biofilm formation in subsurface sediments
journal, March 2019
- Lee, Ji-Hoon; Lee, Bong-Joo; Yun, Uk
- Journal of Applied Biological Chemistry, Vol. 62, Issue 1
Selection imposed by local environmental conditions drives differences in microbial community composition across geographically distinct groundwater aquifers
journal, October 2019
- Fillinger, Lucas; Hug, Katrin; Griebler, Christian
- FEMS Microbiology Ecology, Vol. 95, Issue 11
Oligotrophic wetland sediments susceptible to shifts in microbiomes and mercury cycling with dissolved organic matter addition
journal, January 2018
- Graham, Emily B.; Gabor, Rachel S.; Schooler, Shon
- PeerJ, Vol. 6
Dynamic changes in dissolved organic matter
composition in a Mountain Lake under ice cover and relationships to changes in nutrient
cycling and phytoplankton community composition
journal, December 2019
- Rue, Garrett P.; Darling, Joshua P.; Graham, Emily
- Aquatic Sciences, Vol. 82, Issue 1
Profiling the microbial community structure and functional diversity of a dam‐regulated river undergoing gravel bar restoration
journal, September 2021
- Serrana, Joeselle M.; Li, Bin; Sumi, Tetsuya
- Freshwater Biology, Vol. 66, Issue 11
Spatial gradients in the characteristics of soil-carbon fractions are associated with abiotic features but not microbial communities
journal, January 2019
- Sengupta, Aditi; Indivero, Julia; Gunn, Cailene
- Biogeosciences, Vol. 16, Issue 19
Phases saturation control on mixing driven reactions in 3D porous media
text, January 2021
- Markale, Ishaan; Cimmarusti, Gabriele M.; Britton, Melanie M.
- arXiv
Bacterial Communities in Ground-and Surface Water Mixing Zone Induced by Seasonal Heavy Extraction of Groundwater
text, January 2018
- Lee, Ji-Hoon; Lee, Bong-Joo; Unno, Tatsuya
- Taylor & Francis
At the Nexus of History, Ecology, and Hydrobiogeochemistry: Improved Predictions across Scales through Integration
journal, April 2018
- Stegen, James C.
- mSystems, Vol. 3, Issue 2
Coupling Spatiotemporal Community Assembly Processes to Changes in Microbial Metabolism
journal, December 2016
- Graham, Emily B.; Crump, Alex R.; Resch, Charles T.
- Frontiers in Microbiology, Vol. 7
Variations in bacterial and archaeal communities along depth profiles of Alaskan soil cores
journal, January 2018
- Tripathi, Binu Mani; Kim, Mincheol; Kim, Yongwon
- Scientific Reports, Vol. 8, Issue 1
Dam Operations and Subsurface Hydrogeology Control Dynamics of Hydrologic Exchange Flows in a Regulated River Reach
journal, April 2019
- Shuai, Pin; Chen, Xingyuan; Song, Xuehang
- Water Resources Research, Vol. 55, Issue 4
Responses of microbial activity in hyporheic pore water to biogeochemical changes in a drying headwater stream
journal, February 2019
- Harjung, Astrid; Perujo, Núria; Butturini, Andrea
- Freshwater Biology
Drought Conditions Maximize the Impact of High-Frequency Flow Variations on Thermal Regimes and Biogeochemical Function in the Hyporheic Zone
text, January 2018
- Song, Xuehang; Chen, Xingyuan; Stegen, James
- EarthArXiv
Application of the microbial community coalescence concept to riverine networks: Riverine microbial community coalescence
journal, April 2018
- Mansour, India; Heppell, Catherine M.; Ryo, Masahiro
- Biological Reviews, Vol. 93, Issue 4
Spatial gradients in the characteristics of soil-carbon fractions are associated with abiotic features but not microbial communities
journal, January 2019
- Sengupta, Aditi; Indivero, Julia; Gunn, Cailene
- Biogeosciences, Vol. 16, Issue 19