Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium

Gupta, Nidhi; Skinner, Kelly A.; Summers, Zarath M.; Edirisinghe, Janaka N.; Faria, José P.; Marshall, Christopher W.; Sharma, Anukriti; Gottel, Neil R.; Gilbert, Jack A.; Henry, Christopher S.; O’Loughlin, Edward J.

doi:10.1128/mra.00403-19

Title: Draft Genome Sequence of Rhodococcus sp. Strain ATCC 49988, a Quinoline-Degrading Bacterium

Journal Article · Thu Jun 20 00:00:00 EDT 2019 · Microbiology Resource Announcements

DOI:https://doi.org/10.1128/mra.00403-19· OSTI ID:1661693

Gupta, Nidhi ^[1]; Skinner, Kelly A. ^[2]; Summers, Zarath M. ^[3]; Edirisinghe, Janaka N. ^[1]; Faria, José P. ^[1]; Marshall, Christopher W. ^[2]; Sharma, Anukriti ^[4]; Gottel, Neil R. ^[4]; Gilbert, Jack A. ^[1]; Henry, Christopher S. ^[1]; O’Loughlin, Edward J. ^[2]

Argonne National Lab. (ANL), Argonne, IL (United States); Univ. of Illinois, Chicago, IL (United States)
Argonne National Lab. (ANL), Argonne, IL (United States)
ExxonMobil Research and Engineering Company, Annandale, NJ (United States)
Univ. of Illinois, Chicago, IL (United States)

We report here the 4.9-Mb genome sequence of a quinoline-degrading bacterium, Rhodococcus sp. strain ATCC 49988. The draft genome data will enable the identification of genes and future genetic modification to enhance traits relevant to heteroaromatic compound degradation.

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Research Organization:: Argonne National Lab. (ANL), Argonne, IL (United States)

Sponsoring Organization:: ExxonMobil Chemical Company; USDOE Office of Science - Office of Advanced Scientific Computing Research

Grant/Contract Number:: AC02-06CH11357

OSTI ID:: 1661693

Journal Information:: Microbiology Resource Announcements, Vol. 8, Issue 25; ISSN 2576-098X

Publisher:: SSPA - American Society for MicrobiologyCopyright Statement

Country of Publication:: United States

Language:: English

References (11)

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KBase: The United States Department of Energy Systems Biology Knowledgebase Arkin, Adam P.; Cottingham, Robert W.; Henry, Christopher S. Nature Biotechnology, Vol. 36, Issue 7 https://doi.org/10.1038/nbt.4163	journal	July 2018
Efficient biodegradation of quinolone – Factors determining the process Felczak, Aleksandra; Zawadzka, Katarzyna; Lisowska, Katarzyna International Biodeterioration & Biodegradation, Vol. 96 https://doi.org/10.1016/j.ibiod.2014.08.004	journal	December 2014
SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing Bankevich, Anton; Nurk, Sergey; Antipov, Dmitry Journal of Computational Biology, Vol. 19, Issue 5 https://doi.org/10.1089/cmb.2012.0021	journal	May 2012
FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool Brown, Joseph; Pirrung, Meg; McCue, Lee Ann Bioinformatics, Vol. 33, Issue 19 https://doi.org/10.1093/bioinformatics/btx373	journal	June 2017
Trimmomatic: a flexible trimmer for Illumina sequence data Bolger, Anthony M.; Lohse, Marc; Usadel, Bjoern Bioinformatics, Vol. 30, Issue 15 https://doi.org/10.1093/bioinformatics/btu170	journal	April 2014
The RAST Server: Rapid Annotations using Subsystems Technology Aziz, Ramy K.; Bartels, Daniela; Best, Aaron A. BMC Genomics, Vol. 9, Issue 1, Article No. 75 https://doi.org/10.1186/1471-2164-9-75	journal	January 2008
Biodegradation aspects of Polycyclic Aromatic Hydrocarbons (PAHs): A review Haritash, A. K.; Kaushik, C. P. Journal of Hazardous Materials, Vol. 169, Issue 1-3 https://doi.org/10.1016/j.jhazmat.2009.03.137	journal	September 2009

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