Alterations of c-di-GMP turnover proteins modulate semi-constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli
|
journal
|
September 2017 |
New insights into the metabolic potential of the phototrophic purple bacterium Rhodopila globiformis DSM 161T from its draft genome sequence and evidence for a vanadium-dependent nitrogenase
|
journal
|
February 2018 |
Amniculibacterium aquaticum gen. nov., sp. nov., a new member of the family Flavobacteriaceae isolated from a stream
|
journal
|
June 2019 |
Comparative Genomics, Siderophore Production, and Iron Scavenging Potential of Root Zone Soil Bacteria Isolated from ‘Concord’ Grape Vineyards
|
journal
|
February 2019 |
Screening, identification, and characterization of a novel saccharide-stimulated β-glycosidase from a soil metagenomic library
|
journal
|
August 2016 |
Metagenome, metatranscriptome, and metaproteome approaches unraveled compositions and functional relationships of microbial communities residing in biogas plants
|
journal
|
April 2018 |
Development of a Rapid Identification Method for the Differentiation of Enterococcus Species Using a Species-Specific Multiplex PCR Based on Comparative Genomics
|
journal
|
February 2017 |
Anaerophilus nitritogenes gen. nov., sp. nov., isolated from salt lake sediment in Xinjiang Province, China
|
journal
|
November 2019 |
An RND transporter in the monoterpene metabolism of Castellaniella defragrans
|
journal
|
October 2018 |
Isolation and characterization of a thermophilic sulfur- and iron-reducing thaumarchaeote from a terrestrial acidic hot spring
|
journal
|
June 2019 |
Phenotypic and molecular analysis of nontypeable Group B streptococci: identification of cps2a and hybrid cps2a/cps5 Group B streptococcal capsule gene clusters
|
journal
|
August 2018 |
Structural conservation in a membrane-enveloped filamentous virus infecting a hyperthermophilic acidophile
|
journal
|
August 2018 |
Functional genomics of the rapidly replicating bacterium Vibrio natriegens by CRISPRi
|
journal
|
April 2019 |
Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential
|
journal
|
January 2018 |
Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia
|
journal
|
February 2019 |
A Plant Growth-Promoting Microbial Soil Amendment Dynamically Alters the Strawberry Root Bacterial Microbiome
|
journal
|
November 2019 |
Transmission of ciprofloxacin resistance in Salmonella mediated by a novel type of conjugative helper plasmids
|
journal
|
January 2019 |
An event-driven approach for studying gene block evolution in bacteria
|
journal
|
February 2015 |
Denitrifiers, nitrogen-fixing bacteria and N2O soil gas flux in high Arctic ice-wedge polygon cryosols
|
journal
|
April 2019 |
Role of plasmid plasticity and mobile genetic elements in the entomopathogen Bacillus thuringiensis serovar israelensis
|
journal
|
September 2018 |
Resolution of dynamic MDR structures among the plasmidome of Salmonella using MinION single-molecule, long-read sequencing
|
journal
|
July 2018 |
Improvements to PATRIC, the all-bacterial Bioinformatics Database and Analysis Resource Center
|
journal
|
November 2016 |
Paenibacillus ottowii sp. nov. isolated from a fermentation system processing bovine manure
|
journal
|
March 2020 |
Halorientalis pallida sp. nov., an extremely halophilic archaeon isolated from a marine saltern
|
journal
|
November 2019 |
Serinibacter arcticus sp. nov., isolated from a thawing ancient ice wedge
- Filippova, Svetlana N.; Surgucheva, Natalya A.; Detkova, Ekaterina N.
-
International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 2
https://doi.org/10.1099/ijsem.0.003848
|
journal
|
February 2020 |
Thalassocella blandensis gen. nov., sp. nov., a novel member of the family Cellvibrionaceae
|
journal
|
February 2020 |
Systems and synthetic biology perspective of the versatile plant-pathogenic and polysaccharide-producing bacterium Xanthomonas campestris
|
journal
|
August 2017 |
Iroki: automatic customization and visualization of phylogenetic trees
|
journal
|
September 2019 |
Human gut mobileome during antibiotic therapy. A trajectory-based approach to analysis of the metagenomic time-series datasets
|
preprint
|
October 2019 |
Direct effects of organic pollutants on the growth and gene expression of the Baltic Sea model bacterium Rheinheimera sp. BAL 341
|
journal
|
July 2019 |
Identifying the causal agent of necrotizing hepatopancreatitis in shrimp: Multilocus sequence analysis approach
|
journal
|
February 2018 |
Lineage-specific plasmid acquisition and the evolution of specialized pathogens in Bacillus thuringiensis and the Bacillus cereus group
|
journal
|
April 2018 |
Diversity within the novel Dickeya fangzhongdai sp., isolated from infected orchids, water and pears
|
journal
|
May 2018 |
The effects of micronutrient deficiencies on bacterial species from the human gut microbiota
|
journal
|
May 2017 |
Genetic and Functional Characterization of blaCTX-M-199, a Novel Tazobactam and Sulbactam Resistance-Encoding Gene Located in a Conjugative mcr-1-Bearing IncI2 Plasmid
|
journal
|
May 2017 |
A Prospective Cohort Multicenter Study of Molecular Epidemiology and Phylogenomics of Staphylococcus aureus Bacteremia in Nine Latin American Countries
|
journal
|
July 2017 |
In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification
|
journal
|
February 2019 |
Draft Genome Sequences of Three Virulent Streptococcus thermophilus Bacteriophages Isolated from the Dairy Environment in the Veneto Region of Italy
|
journal
|
March 2018 |
Draft Genome Sequence of Clostridium sp. Strain chh4-2 Isolated from Human Feces
|
journal
|
February 2018 |
Complete Genome Sequence of Oyster Isolate Vibrio vulnificus Env1
|
journal
|
May 2018 |
Complete Genome Sequence of Pseudomonas stutzeri Type Strain SGAir0442, Isolated from Singapore Air Samples
|
journal
|
May 2018 |
Draft Genome Sequences of Three Salmonella enterica Serovar 4,[5],12:i:− Strains and One S. enterica Serovar Typhimurium Strain, Isolated in Brazil
|
journal
|
July 2018 |
Genome Sequence of Geobacillus thermoleovorans SGAir0734, Isolated from Singapore Air
|
journal
|
July 2018 |
Genome Sequence of Acinetobacter baumannii Strain D36, an Antibiotic-Resistant Isolate from Lineage 2 of Global Clone 1
|
journal
|
December 2015 |
Staphylococcus aureus HemX Modulates Glutamyl-tRNA Reductase Abundance To Regulate Heme Biosynthesis
|
journal
|
February 2018 |
Draft Genome Sequence of Halotolerant Bacterium Chromohalobacter salexigens ANJ207, Isolated from Salt Crystal Deposits in Pipelines
|
journal
|
April 2019 |
Draft Genome Sequence of Bacillus thuringiensis DPC6431, Producer of the Bacteriocin Thuricin CD
|
journal
|
August 2019 |
Complete Genome Sequence of Pseudomonas sp. Strain SGAir0191, Isolated from Tropical Air Collected in Singapore
|
journal
|
August 2019 |
Complete Genome Sequence of Brachybacterium sp. Strain SGAir0954, Isolated from Singapore Air
|
journal
|
August 2019 |
Draft Genome Sequence of the Type Strain Streptomyces armeniacus ATCC 15676
|
journal
|
September 2018 |
Complete Genome Sequence of Sinorhizobium Phage ΦM6, the First Terrestrial Phage of a Marine Phage Group
|
journal
|
October 2018 |
Draft Genome Sequence of Vibrio cyclitrophicus NCT10V, Cultivated from the Microbiome of a Marine Copepod
|
journal
|
October 2019 |
Escherichia coli NGF-1, a Genetically Tractable, Efficiently Colonizing Murine Gut Isolate
|
journal
|
December 2018 |
In Silico Identification of Three Types of Integrative and Conjugative Elements in Elizabethkingia anophelis Strains Isolated from around the World
|
journal
|
April 2019 |
Metabolic Responses to Polymyxin Treatment in Acinetobacter baumannii ATCC 19606: Integrating Transcriptomics and Metabolomics with Genome-Scale Metabolic Modeling
|
journal
|
February 2019 |
Linking Nitrogen Load to the Structure and Function of Wetland Soil and Rhizosphere Microbial Communities
|
journal
|
January 2018 |
Evolution of fixNOQP genes encoding cytochrome oxidase with high affinity to oxygen in rhizobia and related bacteria
|
journal
|
July 2017 |
High-throughput DNA sequencing technologies for water and wastewater analysis
|
journal
|
October 2019 |
Draft Genome Sequence of Pseudarthrobacter phenanthrenivorans Strain MHSD1, a Bacterial Endophyte Isolated From the Medicinal Plant Pellaea calomelanos
|
journal
|
January 2020 |
SAMSA2: a standalone metatranscriptome analysis pipeline
|
journal
|
May 2018 |
Escherichia coli O157:H7 strains harbor at least three distinct sequence types of Shiga toxin 2a-converting phages
|
journal
|
September 2015 |
SMRT sequencing of the Campylobacter coli BfR-CA-9557 genome sequence reveals unique methylation motifs
|
journal
|
December 2015 |
Combining multiple functional annotation tools increases coverage of metabolic annotation
|
journal
|
December 2018 |
Comparative genomic analysis of Parageobacillus thermoglucosidasius strains with distinct hydrogenogenic capacities
|
journal
|
December 2018 |
Comparative genomics of Mycoplasma pneumoniae isolated from children with pneumonia: South Korea, 2010–2016
|
journal
|
November 2019 |
Burkholderia thailandensis strain E555 is a surrogate for the investigation of Burkholderia pseudomallei replication and survival in macrophages
|
journal
|
May 2019 |
Identification and engineering of 32 membered antifungal macrolactone notonesomycins
|
journal
|
March 2020 |
Metatranscriptomic and comparative genomic insights into resuscitation mechanisms during enrichment culturing
|
journal
|
December 2018 |
Potential probiotic-associated traits revealed from completed high quality genome sequence of Lactobacillus fermentum 3872
|
journal
|
February 2017 |
Insights from the draft genome into the pathogenicity of a clinical isolate of Elizabethkingia meningoseptica Em3
|
journal
|
September 2017 |
Filling gaps in bacterial amino acid biosynthesis pathways with high-throughput genetics
|
journal
|
January 2018 |
Coordinated regulation of core and accessory genes in the multipartite genome of Sinorhizobium fredii
|
journal
|
May 2018 |
Three New Escherichia coli Phages from the Human Gut Show Promising Potential for Phage Therapy
|
journal
|
June 2016 |
Prohibition of antibiotic growth promoters has affected the genomic profiles of Lactobacillus salivarius inhabiting the swine intestine
|
journal
|
October 2017 |
Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves
|
journal
|
December 2017 |
The draft genomes of Elizabethkingia anophelis of equine origin are genetically similar to three isolates from human clinical specimens
|
journal
|
July 2018 |
Microbial enrichment and gene functional categories revealed on the walls of a spent fuel pool of a nuclear power plant
|
journal
|
October 2018 |
Accessory genome of the multi-drug resistant ocular isolate of Pseudomonas aeruginosa PA34
|
journal
|
April 2019 |
Genomic insights on heterogeneous resistance to vancomycin and teicoplanin in Methicillin-resistant Staphylococcus aureus: A first report from South India
|
journal
|
December 2019 |
Is there a Function for a Sex Pheromone Precursor?: A Predicted Link between Bacterial Redox Metabolism and Propagation of Antibiotic Resistance
|
journal
|
July 2019 |
PATtyFams: Protein Families for the Microbial Genomes in the PATRIC Database
|
journal
|
February 2016 |
Insights of Phage-Host Interaction in Hypersaline Ecosystem through Metagenomics Analyses
|
journal
|
March 2017 |
The Physiological Functions and Structural Determinants of Catalytic Bias in the [FeFe]-Hydrogenases CpI and CpII of Clostridium pasteurianum Strain W5
|
journal
|
July 2017 |
PacBio But Not Illumina Technology Can Achieve Fast, Accurate and Complete Closure of the High GC, Complex Burkholderia pseudomallei Two-Chromosome Genome
|
journal
|
August 2017 |
Integrative and Conjugative Elements (ICEs) in Pasteurellaceae Species and Their Detection by Multiplex PCR
|
journal
|
June 2018 |
FeGenie: A Comprehensive Tool for the Identification of Iron Genes and Iron Gene Neighborhoods in Genome and Metagenome Assemblies
|
journal
|
January 2020 |
Genomic Diversity of Two Hydrocarbon-Degrading and Plant Growth-Promoting Pseudomonas Species Isolated from the Oil Field of Bóbrka (Poland)
|
journal
|
June 2019 |
Search for Ancestral Features in Genomes of Rhizobium leguminosarum bv. viciae Strains Isolated from the Relict Legume Vavilovia formosa
|
journal
|
December 2019 |
Genome-Wide Profiling of Enterotoxigenic Staphylococcus aureus Strains Used for the Production of Naturally Contaminated Cheeses
|
journal
|
December 2019 |
Genome Analysis of Vallitalea guaymasensis Strain L81 Isolated from a Deep-Sea Hydrothermal Vent System
|
journal
|
July 2018 |
Life in High Salt Concentrations with Changing Environmental Conditions: Insights from Genomic and Phenotypic Analysis of Salinivibrio sp.
|
journal
|
November 2019 |
Characterization of Sinorhizobium sp. LM21 Prophages and Virus-Encoded DNA Methyltransferases in the Light of Comparative Genomic Analyses of the Sinorhizobial Virome
|
journal
|
June 2017 |
Prediction and characterization of enzymatic activities guided by sequence similarity and genome neighborhood networks
|
journal
|
June 2014 |
Using KBase to Assemble and Annotate Prokaryotic Genomes
|
journal
|
August 2017 |
Computational Methods in Microbial Population Genomics
|
book
|
November 2017 |
Lipopeptide biodiversity in antifungal Bacillus strains isolated from Algeria
|
journal
|
June 2018 |
Genome analysis of the marine bacterium Kiloniella laminariae and first insights into comparative genomics with related Kiloniella species
|
journal
|
December 2019 |
Genomic and functional characterisation of two Enterococcus strains isolated from Cotija cheese and their potential role in ripening
|
journal
|
January 2018 |
Achieving Accurate Sequence and Annotation Data for Caulobacter vibrioides CB13
|
journal
|
September 2018 |
Whole genome sequencing as a tool for phylogenetic analysis of clinical strains of Mitis group streptococci
|
journal
|
June 2016 |
Paraburkholderia tropica as a plant-growth–promoting bacterium in barley: characterization of tissues colonization by culture-dependent and -independent techniques for use as an agronomic bioinput
|
journal
|
June 2019 |
A clinician's guide to microbiome analysis
|
journal
|
August 2017 |
Trait-based community assembly and succession of the infant gut microbiome
|
journal
|
February 2019 |
Detection of antimicrobial resistance genes associated with the International Space Station environmental surfaces
|
journal
|
January 2018 |
GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
|
journal
|
January 2018 |
Rgg-Shp regulators are important for pneumococcal colonization and invasion through their effect on mannose utilization and capsule synthesis
|
journal
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April 2018 |
The ant Lasius niger is a new source of bacterial enzymes with biotechnological potential for bleaching dye
|
journal
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October 2019 |
From the wound to the bench: exoproteome interplay between wound-colonizing Staphylococcus aureus strains and co-existing bacteria
|
journal
|
March 2018 |
Twitching motility of Stenotrophomonas maltophilia under iron limitation: In-silico , phenotypic and proteomic approaches
|
journal
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January 2020 |
Critical assessment of genome-scale metabolic networks: the need for a unified standard
|
journal
|
February 2015 |
PANNZER: high-throughput functional annotation of uncharacterized proteins in an error-prone environment
|
journal
|
January 2015 |
Pygenprop: a Python library for programmatic exploration and comparison of organism genome properties
|
journal
|
June 2019 |
From hairballs to hypotheses–biological insights from microbial networks
|
journal
|
July 2018 |
Recombination of plasmids in a carbapenem-resistant NDM-5-producing clinical Escherichia coli isolate
|
journal
|
January 2018 |
NCBI prokaryotic genome annotation pipeline
|
journal
|
June 2016 |
Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39
|
journal
|
August 2018 |
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
|
journal
|
October 2019 |
Public questions spur the discovery of new bacterial species associated with lignin bioconversion of industrial waste
|
journal
|
March 2019 |
Thermodesulfobium acidiphilum sp. nov., a thermoacidophilic, sulfate-reducing, chemoautotrophic bacterium from a thermal site
|
journal
|
May 2017 |
Genome-based classification of two halotolerant extreme acidophiles, Acidihalobacter prosperus V6 (=DSM 14174 =JCM 32253) and 'Acidihalobacter ferrooxidans' V8 (=DSM 14175 =JCM 32254) as two new species, Acidihalobacter aeolianus sp. nov. and Acidihalobacter ferrooxydans sp. nov., respectively
|
journal
|
June 2019 |
Limnoglobus roseus gen. nov., sp. nov., a novel freshwater planctomycete with a giant genome from the family Gemmataceae
- Kulichevskaya, Irina S.; Naumoff, Daniil G.; Miroshnikov, Kirill K.
-
International Journal of Systematic and Evolutionary Microbiology, Vol. 70, Issue 2
https://doi.org/10.1099/ijsem.0.003904
|
journal
|
February 2020 |
Senegalimassilia faecalis sp. nov., an anaerobic actinobacterium isolated from human faeces, and emended description of the genus Senegalimassilia
|
journal
|
March 2020 |
Comparative Genome Analysis Reveals Important Genetic Factors Associated with Probiotic Property in Enterococcus faecium strains
|
posted_content
|
April 2018 |
Genome biology of a novel lineage of planctomycetes widespread in anoxic aquatic environments
|
journal
|
July 2018 |
Geomicrobiology of the carbon, nitrogen and sulphur cycles in Powell Lake: a permanently stratified water column containing ancient seawater
|
journal
|
July 2019 |
Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host‐associated and free‐living Aquimarina ( Bacteroidetes, Flavobacteriaceae ) species
|
journal
|
August 2019 |
A sparse covarying unit that describes healthy and impaired human gut microbiota development
|
journal
|
July 2019 |
Cooccurrence of Two tet (X) Variants in an Empedobacter brevis Strain of Shrimp Origin
|
journal
|
December 2019 |
Quantification of Azospirillum brasilense FP2 Bacteria in Wheat Roots by Strain-Specific Quantitative PCR
|
journal
|
October 2015 |
Population Genetics and Characterization of Campylobacter jejuni Isolates from Western Jackdaws and Game Birds in Finland
|
journal
|
February 2019 |
Draft Genome Sequence of Labrenzia sp. Strain EL143, a Coral-Associated Alphaproteobacterium with Versatile Symbiotic Living Capability and Strong Halogen Degradation Potential
|
journal
|
March 2018 |
Complete Genome Sequence of Lelliottia nimipressuralis Type Strain SGAir0187, Isolated from Tropical Air Collected in Singapore
|
journal
|
May 2018 |
Draft Genome Sequences of Five Staphylococcus aureus Strains Isolated from Clinically Healthy Cows in the Russian Federation
|
journal
|
April 2018 |
Draft Genome Sequence of a New Vibrio Strain with the Potential To Produce Bacteriocin-Like Inhibitory Substances, Isolated from the Gut Microflora of Scallop (Argopecten purpuratus)
|
journal
|
May 2018 |
Complete Genome Sequence of the Bacterium Serratia marcescens SGAir0764, Isolated from Singapore Air
|
journal
|
July 2018 |
Genome Sequence of Pantoea ananatis SGAir0210, Isolated from Outdoor Air in Singapore
|
journal
|
July 2018 |
Complete Genome Sequence of Edwardsiella tarda Isolate FL95-01, Recovered from Channel Catfish
|
journal
|
June 2015 |
Draft Genome Sequences of Vibrio alginolyticus Strains V1 and V2, Opportunistic Marine Pathogens
|
journal
|
August 2015 |
Complete Genome Sequence of an Edwardsiella piscicida -Like Species, Recovered from Tilapia in the United States
|
journal
|
October 2015 |
Draft Genome Sequences of Nonclinical and Clinical Enterobacter cloacae Isolates Exhibiting Multiple Antibiotic Resistance and Virulence Factors
|
journal
|
November 2017 |
Draft Genome Sequence of a Novel Luteimonas sp. Strain from Coral Mucus, Hawai‘i
|
journal
|
December 2016 |
Draft Genome Sequences of Strains TRE 1, TRE D, TRE H, and TRI 7, Isolated from Tamarins and Belonging to Four Putative Novel Bifidobacterium Species
|
journal
|
January 2018 |
Complete Genome Sequence of Edwardsiella hoshinae ATCC 35051
|
journal
|
February 2017 |
Bacteriophages of the Urinary Microbiome
|
journal
|
April 2018 |
Molecular Prediction of the O157:H-Negative Phenotype Prevalent in Australian Shiga Toxin-Producing Escherichia coli Cases Improves Concordance of In Silico Serotyping with Phenotypic Motility
|
journal
|
April 2018 |
Novel Sulfolobus Fuselloviruses with Extensive Genomic Variations
|
journal
|
November 2019 |
A Bacterial Symbiont Protects Honey Bees from Fungal Disease
|
journal
|
June 2021 |
Ongoing Transposon-Mediated Genome Reduction in the Luminous Bacterial Symbionts of Deep-Sea Ceratioid Anglerfishes
|
journal
|
July 2018 |
Bioinformatic Genome Comparisons for Taxonomic and Phylogenetic Assignments Using Aeromonas as a Test Case
|
journal
|
November 2014 |
Draft Genome Sequence of Mediterraneibacter sp. nov. Strain gm002, Isolated from Human Feces
|
journal
|
August 2019 |
Draft Genome Sequence of Desulfosporosinus fructosivorans Strain 63.6FT, Isolated from Marine Sediment in the Baltic Sea
|
journal
|
August 2019 |
Complete Genome Sequence of Microbacterium sp. Strain SGAir0570, Isolated from Tropical Air Collected in Singapore
|
journal
|
August 2019 |
Prey Range and Genome Evolution of Halobacteriovorax marinus Predatory Bacteria from an Estuary
|
journal
|
January 2018 |
Function of BriC peptide in the pneumococcal competence and virulence portfolio
|
text
|
January 2018 |
MetaComp: comprehensive analysis software for comparative meta-omics including comparative metagenomics
|
journal
|
October 2017 |
Development and validation of an updated computational model of Streptomyces coelicolor primary and secondary metabolism
|
journal
|
July 2018 |
The complete genome sequence of the nitrile biocatalyst Rhodococcus rhodochrous ATCC BAA-870
|
journal
|
January 2020 |
The anaerobic linalool metabolism in Thauera linaloolentis 47 Lol
|
journal
|
April 2016 |
Genomic and proteomic analysis of lignin degrading and polyhydroxyalkanoate accumulating β-proteobacterium Pandoraea sp. ISTKB
|
journal
|
June 2018 |
Plasmid Characterization and Chromosome Analysis of Two netF+ Clostridium perfringens Isolates Associated with Foal and Canine Necrotizing Enteritis
|
journal
|
February 2016 |
The Identification of Novel Diagnostic Marker Genes for the Detection of Beer Spoiling Pediococcus damnosus Strains Using the BlAst Diagnostic Gene findEr
|
journal
|
March 2016 |
Analysis of the complete genome sequence of Nocardia seriolae UTF1, the causative agent of fish nocardiosis: The first reference genome sequence of the fish pathogenic Nocardia species
|
journal
|
March 2017 |
Promiscuous signaling by a regulatory system unique to the pandemic PMEN1 pneumococcal lineage
|
journal
|
May 2017 |
Physiological and genomic characterization of Arcobacter anaerophilus IR-1 reveals new metabolic features in Epsilonproteobacteria
|
journal
|
September 2015 |
Whole-Metagenome-Sequencing-Based Community Profiles of Vitis vinifera L. cv. Corvina Berries Withered in Two Post-harvest Conditions
|
journal
|
June 2016 |
Metagenomics of Thermophiles with a Focus on Discovery of Novel Thermozymes
|
journal
|
September 2016 |
Photosynthesis Is Widely Distributed among Proteobacteria as Demonstrated by the Phylogeny of PufLM Reaction Center Proteins
|
journal
|
January 2018 |
Taxon-Function Decoupling as an Adaptive Signature of Lake Microbial Metacommunities Under a Chronic Polymetallic Pollution Gradient
|
journal
|
May 2018 |
Colanic Acid Is a Novel Phage Receptor of Pectobacterium carotovorum subsp. carotovorum Phage POP72
|
journal
|
February 2019 |
Genomic Comparison of Lactobacillus helveticus Strains Highlights Probiotic Potential
|
journal
|
June 2019 |
Pan-Genomic and Polymorphic Driven Prediction of Antibiotic Resistance in Elizabethkingia
|
journal
|
July 2019 |
An introduction to the analysis of shotgun metagenomic data
|
journal
|
June 2014 |
Stumbling across the Same Phage: Comparative Genomics of Widespread Temperate Phages Infecting the Fish Pathogen Vibrio anguillarum
|
journal
|
May 2017 |
The mesopelagic anoxic Black Sea as an unexpected habitat for Synechococcus challenges our understanding of global “deep red fluorescence”
|
text
|
January 2019 |
Complete Genome Sequence of Terriglobus albidus Strain ORNL, an Acidobacterium Isolated from the Populus deltoides Rhizosphere
|
dataset
|
January 2020 |
From RNA-seq to Biological Inference: Using Compositional Data Analysis in Meta-Transcriptomics
|
book
|
October 2018 |
Draft genome sequence of Lactobacillus plantarum C4 (CECT 9567), a potential probiotic strain isolated from kefir
|
journal
|
February 2019 |
Comparative genome analysis reveals the evolution of chloroacetanilide herbicide mineralization in Sphingomonas wittichii DC-6
|
journal
|
April 2019 |
2,3-Butanediol production by the non-pathogenic bacterium Paenibacillus brasilensis
|
journal
|
August 2018 |
Genomic insights into the uncultured genus ‘Candidatus Magnetobacterium’ in the phylum Nitrospirae
|
journal
|
June 2014 |
Excess labile carbon promotes the expression of virulence factors in coral reef bacterioplankton
|
journal
|
September 2017 |
Allelic variation contributes to bacterial host specificity
|
journal
|
October 2015 |
Reconstructing metabolic pathways of hydrocarbon-degrading bacteria from the Deepwater Horizon oil spill
|
journal
|
May 2016 |
Evolution of tigecycline- and colistin-resistant CRKP (carbapenem-resistant Klebsiella pneumoniae ) in vivo and its persistence in the GI tract
|
journal
|
July 2018 |
Virulent coliphages in 1-year-old children fecal samples are fewer, but more infectious than temperate coliphages
|
journal
|
January 2020 |
Uncovering the potential of novel micromonosporae isolated from an extreme hyper-arid Atacama Desert soil
|
journal
|
March 2019 |
RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
|
journal
|
February 2015 |
Endozoicomonas genomes reveal functional adaptation and plasticity in bacterial strains symbiotically associated with diverse marine hosts
|
journal
|
January 2017 |
Mycobacterium llatzerense, a waterborne Mycobacterium, that resists phagocytosis by Acanthamoeba castellanii
|
journal
|
April 2017 |
Genetic, structural, and functional diversity of low and high-affinity siderophores in strains of nitrogen fixing Azotobacter chroococcum
|
journal
|
January 2019 |
Noncanonical SMC protein in Mycobacterium smegmatis restricts maintenance of Mycobacterium fortuitum plasmids
|
journal
|
September 2014 |
A Meta-proteogenomic Approach to Peptide Identification Incorporating Assembly Uncertainty and Genomic Variation
|
journal
|
May 2019 |
Insights on the Emergence of Mycobacterium tuberculosis from the Analysis of Mycobacterium kansasii
|
journal
|
February 2015 |
Gene Loss Dominates As a Source of Genetic Variation within Clonal Pathogenic Bacterial Species
|
journal
|
July 2015 |
Selection of hyperproduction of AmpC and SME-1 in a carbapenem-resistant Serratia marcescens isolate during antibiotic therapy
|
journal
|
February 2018 |
Extensively Drug-Resistant Pseudomonas aeruginosa ST309 Harboring Tandem Guiana Extended Spectrum β-Lactamase Enzymes: A Newly Emerging Threat in the United States
|
journal
|
June 2019 |
Ruegeria denitrificans sp. nov., a marine bacterium in the family Rhodobacteraceae with the potential ability for cyanophycin synthesis
|
journal
|
August 2018 |
Indiicoccus explosivorum gen. nov., sp. nov., isolated from an explosives waste contaminated site
|
journal
|
August 2019 |
Calorimonas adulescens gen. nov., sp. nov., an anaerobic thermophilic bacterium utilizing methoxylated benzoates
|
journal
|
March 2020 |
Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids
|
journal
|
March 2018 |
Thermosipho spp. immune system differences affect variation in genome size and geographical distributions
|
posted_content
|
May 2018 |
Scaffolding bacterial genomes and probing host-virus interactions in gut microbiome by proximity ligation (chromosome capture) assay
|
journal
|
February 2017 |
Complete Sequence of the IncA/C 1 Plasmid pCf587 Carrying bla PER-2 from Citrobacter freundii
|
journal
|
May 2018 |
Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India
|
journal
|
November 2016 |
Comparative Genomics Study of Staphylococcus epidermidis Isolates from Orthopedic-Device-Related Infections Correlated with Patient Outcome
|
journal
|
October 2017 |
Genomically Informed Surveillance for Carbapenem-Resistant Enterobacteriaceae in a Health Care System
|
journal
|
July 2015 |
Promiscuous and Adaptable Enzymes Fill “Holes” in the Tetrahydrofolate Pathway in Chlamydia Species
|
journal
|
July 2014 |
Genome Sequence of Streptomyces cavourensis 1AS2a, a Rhizobacterium Isolated from the Brazilian Cerrado Biome
|
journal
|
May 2019 |
Genome Sequence of a Jumbo Bacteriophage That Infects the Kiwifruit Phytopathogen Pseudomonas syringae pv. actinidiae
|
journal
|
May 2019 |
Genome Sequence of Lipopeptide- and Antioxidant-Producing Strain Bacillus velezensis NWUMFkBS10.5
|
journal
|
July 2019 |
Complete Genome Sequence of Lysinibacillus sp. Strain SGAir0095, Isolated from Tropical Air Samples Collected in Singapore
|
journal
|
September 2019 |
Complete Genome Sequence of Agrococcus sp. Strain SGAir0287, Isolated from Tropical Air Collected in Singapore
|
journal
|
August 2019 |
Complete Genome Sequence of Rhodococcus sp. Strain SGAir0479, Isolated from Indoor Air Collected in Singapore
|
journal
|
October 2019 |
Complete Genome Sequence of Micrococcus luteus Strain SGAir0127, Isolated from Indoor Air Samples from Singapore
|
journal
|
October 2019 |
Complete Genome Sequence of Microbacterium sp. Strain 10M-3C3, Isolated from an Extremely Phosphorus-Poor Lake
|
journal
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January 2019 |
High correlation between genotypes and phenotypes of environmental bacteria Comamonas testosteroni strains
|
journal
|
February 2015 |
Comparative genome analysis of Mycoplasma pneumoniae
|
journal
|
August 2015 |
Disrupting ROS-protection mechanism allows hydrogen peroxide to accumulate and oxidize Sb(III) to Sb(V) in Pseudomonas stutzeri TS44
|
journal
|
November 2016 |
A genomic analysis of Mycobacterium immunogenum strain CD11_6 and its potential role in the activation of T cells against Mycobacterium tuberculosis
|
journal
|
March 2019 |
Characterization and genome analysis of a butanol–isopropanol-producing Clostridium beijerinckii strain BGS1
|
journal
|
October 2018 |
Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile
|
journal
|
February 2016 |
OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling
|
journal
|
March 2019 |
Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine
|
journal
|
July 2015 |
Functional screening for triclosan resistance in a wastewater metagenome and isolates of Escherichia coli and Enterococcus spp. from a large Canadian healthcare region
|
journal
|
January 2019 |
Identification and characterization of putative Aeromonas spp. T3SS effectors
|
journal
|
June 2019 |
The genomes of three Bradyrhizobium sp. isolated from root nodules of Lupinus albescens grown in extremely poor soils display important genes for resistance to environmental stress
|
journal
|
May 2018 |
Grant_Staphylococcus_succinus
|
dataset
|
January 2021 |
Draft Genome Sequence of Larkinella sp. Strain BK230, Isolated from Populus deltoides Roots
|
dataset
|
January 2020 |
Inducible Prophage Mutant of Escherichia coli Can Lyse New Host and the Key Sites of Receptor Recognition Identification
|
journal
|
February 2017 |
Comparative Genomics of Four Isosphaeraceae Planctomycetes: A Common Pool of Plasmids and Glycoside Hydrolase Genes Shared by Paludisphaera borealis PX4T, Isosphaera pallida IS1BT, Singulisphaera acidiphila DSM 18658T, and Strain SH-PL62
|
journal
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March 2017 |
A Novel Strategy for Detecting Recent Horizontal Gene Transfer and Its Application to Rhizobium Strains
|
journal
|
May 2018 |
Hydrogen-Fueled Microbial Pathways in Biogas Upgrading Systems Revealed by Genome-Centric Metagenomics
|
journal
|
May 2018 |
Comparative Genomics of Thiohalobacter thiocyanaticus HRh1T and Guyparkeria sp. SCN-R1, Halophilic Chemolithoautotrophic Sulfur-Oxidizing Gammaproteobacteria Capable of Using Thiocyanate as Energy Source
|
journal
|
May 2019 |
Comparative Genomics and Phenotypic Investigations Into Antibiotic, Heavy Metal, and Disinfectant Susceptibilities of Salmonella enterica Strains Isolated in Australia
|
journal
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July 2019 |
Metabolic network percolation quantifies biosynthetic capabilities across the human oral microbiome
|
journal
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June 2019 |
The outer mucus layer hosts a distinct intestinal microbial niche
|
text
|
January 2015 |
Microbial taxonomy in the post-genomic era: Rebuilding from scratch?
|
journal
|
December 2014 |
Pervasiveness of UVC254-resistant Geobacillus strains in extreme environments
|
journal
|
January 2018 |
Degradation Mechanism of 4-Chlorobiphenyl by Consortium of Pseudomonas sp. Strain CB-3 and Comamonas sp. Strain CD-2
|
journal
|
October 2019 |
Genomic analysis of Indian strains of Salmonella enterica subsp. enterica serovar Typhi indicates novel genetic repertoire for pathogenicity and adaptations
|
journal
|
May 2019 |
First high-quality draft genome of Ochrobactrum haematophilum P6BS-III, a highly glyphosate-tolerant strain isolated from agricultural soil in Argentina
|
journal
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February 2019 |
16Stimator: statistical estimation of ribosomal gene copy numbers from draft genome assemblies
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journal
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September 2015 |
Enhanced bacterial mutualism through an evolved biofilm phenotype
|
journal
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July 2018 |
Plasticity of a holobiont: desiccation induces fasting-like metabolism within the lichen microbiota
|
journal
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October 2018 |
Landscape topography structures the soil microbiome in arctic polygonal tundra
|
journal
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February 2018 |
Automated structure prediction of trans-acyltransferase polyketide synthase products
|
journal
|
July 2019 |
Characterization and diversity of phages infecting Aeromonas salmonicida subsp. salmonicida
|
journal
|
August 2017 |
Whole Genome Sequencing of Extended Spectrum β-lactamase (ESBL)-producing Klebsiella pneumoniae Isolated from Hospitalized Patients in KwaZulu-Natal, South Africa
|
journal
|
April 2019 |
A comparative genomics approach for identifying host-range determinants in Streptococcus thermophilus bacteriophages
|
journal
|
May 2019 |
Defining a Core Genome for the Herpesvirales and Exploring their Evolutionary Relationship with the Caudovirales
|
journal
|
August 2019 |
SXT/R391 integrative and conjugative elements in Proteus species reveal abundant genetic diversity and multidrug resistance
|
journal
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November 2016 |
Networks of energetic and metabolic interactions define dynamics in microbial communities
|
journal
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November 2015 |
Establishing the Enterprises’ Innovation Ecosystem Based on Dynamics Core Competence—The Case of China’s High-Speed Railway
|
journal
|
August 2018 |
Metagenomic binning reveals versatile nutrient cycling and distinct adaptive features in alphaproteobacterial symbionts of marine sponges
|
journal
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April 2018 |
The spread of KPC-producing Enterobacteriaceae in Spain: WGS analysis of the emerging high-risk clones of Klebsiella pneumoniae ST11/KPC-2, ST101/KPC-2 and ST512/KPC-3
|
journal
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August 2016 |
Complete genetic analysis of plasmids carrying mcr-1 and other resistance genes in an Escherichia coli isolate of animal origin
|
journal
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December 2016 |
Halomonas nigrificans sp. nov., isolated from cheese
|
journal
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January 2018 |
Genome analysis of clinical multilocus sequence Type 11 Klebsiella pneumoniae from China
|
journal
|
February 2018 |
The cell wall of the filamentous anoxygenic phototrophic bacterium Oscillochloris trichoides
|
journal
|
January 2018 |
New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures
|
journal
|
January 2019 |
Holocene paleodepositional changes reflected in the sedimentary microbiome of the Black Sea
|
journal
|
March 2019 |
Whole genome mining reveals a diverse repertoire of lanthionine synthetases and lanthipeptides among the genus Paenibacillus
|
journal
|
November 2019 |
Draft Genome Sequence of Bowmanella denitrificans JL63, a Bacterium Isolated from Whiteleg Shrimp (Litopenaeus vannamei) That Can Inhibit the Growth of Vibrio parahaemolyticus
|
journal
|
April 2018 |
Complete Genome Sequence of a Deletion Mutant of Vibrio parahaemolyticus from Pacific White Shrimp (Penaeus vannamei)
|
journal
|
June 2018 |
Genome Sequence of “ Candidatus Thioglobus singularis” Strain PS1, a Mixotroph from the SUP05 Clade of Marine Gammaproteobacteria
|
journal
|
October 2015 |
Draft Genome Sequences of Acinetobacter and Bacillus Strains Isolated from Spacecraft-Associated Surfaces
|
journal
|
February 2018 |
Manganese Detoxification by MntE Is Critical for Resistance to Oxidative Stress and Virulence of Staphylococcus aureus
|
journal
|
February 2019 |
Complete Genome Sequence of Lactobacillus reuteri PNW1, a Promising Probiotic Candidate
|
journal
|
February 2019 |
Draft Genome Sequence of a Fermenting Bacterium, Soehngenia sp. Strain 1933P, Isolated from a Petroleum Reservoir in Azerbaijan
|
journal
|
July 2019 |
Comparative Genomics Reveals a Well-Conserved Intrinsic Resistome in the Emerging Multidrug-Resistant Pathogen Cupriavidus gilardii
|
journal
|
October 2019 |
Structural and functional organization of the plasmid regulons of Rhizobium leguminosarum symbiotic genes
|
journal
|
November 2016 |
A machine learning-based service for estimating quality of genomes using PATRIC
|
journal
|
October 2019 |
Systematic identification and analysis of frequent gene fusion events in metabolic pathways
|
journal
|
June 2016 |
Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853
|
journal
|
June 2017 |
Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures
|
journal
|
July 2018 |
In vivo competition and horizontal gene transfer among distinct Staphylococcus aureus lineages as major drivers for adaptational changes during long-term persistence in humans
|
journal
|
October 2018 |
The use of genome-scale metabolic network reconstruction to predict fluxes and equilibrium composition of N-fixing versus C-fixing cells in a diazotrophic cyanobacterium, Trichodesmium erythraeum
|
journal
|
January 2017 |
Dissection of exopolysaccharide biosynthesis in Kozakia baliensis
|
journal
|
October 2016 |
Genome architecture of Lactobacillus plantarum PS128, a probiotic strain with potential immunomodulatory activity
|
journal
|
August 2015 |
Draft genome sequence of non-shiga toxin-producing Escherichia coli O157 NCCP15738
|
journal
|
April 2016 |
Genome sequence and comparative genomic analysis of a clinically important strain CD11-4 of Janibacter melonis isolated from celiac disease patient
|
journal
|
January 2018 |
Draft genome sequence of the strain 16-537536, isolated from a patient with bronchiectasis and its relationship to the Pseudomonas koreensis group of the Pseudomonas fluorescens complex
|
journal
|
January 2020 |
Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments
|
journal
|
August 2017 |
Draft genome sequence of Cellulomonas carbonis T26T and comparative analysis of six Cellulomonas genomes
|
journal
|
November 2015 |
Insights from the draft genome of the subsection V (Stigonematales) cyanobacterium Hapalosiphon sp. Strain MRB220 associated with 2-MIB production
|
journal
|
September 2016 |
Complete genome sequence of Pseudomonas citronellolis P3B5, a candidate for microbial phyllo-remediation of hydrocarbon-contaminated sites
|
journal
|
September 2016 |
New Applications of Synthetic Biology Tools for Cyanobacterial Metabolic Engineering
|
journal
|
February 2019 |
QnrS1- and Aac(6′)-Ib-cr-Producing Escherichia coli among Isolates from Animals of Different Sources: Susceptibility and Genomic Characterization
|
journal
|
May 2016 |
Comparative Genomics and Transcriptional Analysis of Flavobacterium columnare Strain ATCC 49512
|
journal
|
April 2017 |
Salmonella enterica serovar Infantis from Food and Human Infections, Switzerland, 2010–2015: Poultry-Related Multidrug Resistant Clones and an Emerging ESBL Producing Clonal Lineage
|
journal
|
July 2017 |
Comparative Genomics of Thalassobius Including the Description of Thalassobius activus sp. nov., and Thalassobius autumnalis sp. nov.
|
journal
|
January 2018 |
Extended Spectrum Beta-Lactamase-Producing Gram-Negative Bacteria Recovered From an Amazonian Lake Near the City of Belém, Brazil
|
journal
|
February 2019 |
Whole Genome Sequencing-Based Comparison of Food Isolates of Cronobacter sakazakii
|
journal
|
July 2019 |
Rhizosphere Metagenomics of Paspalum scrobiculatum L. (Kodo Millet) Reveals Rhizobiome Multifunctionalities
|
journal
|
November 2019 |
Comparative Pangenomics of the Mammalian Gut Commensal Bifidobacterium longum
|
journal
|
December 2019 |
Sequencing at sea: challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
|
journal
|
January 2014 |
Miniphocibacter massiliensis gen. nov., sp. nov., a new species isolated from the human gut and its taxono‐genomics description
|
journal
|
October 2018 |
Aquella oligotrophica gen. nov. sp. nov.: A new member of the family Neisseriaceae isolated from laboratory tap water
|
journal
|
December 2018 |
Description of Alteromonas abrolhosensis sp. nov., isolated from sea water of Abrolhos Bank, Brazil
|
journal
|
January 2018 |
Draft genome sequence of Bacillus paralicheniformis TRQ65, a biological control agent and plant growth-promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) rhizosphere in the Yaqui Valley, Mexico
|
journal
|
November 2019 |
Metagenome sequencing of fingermillet-associated microbial consortia provides insights into structural and functional diversity of endophytes
|
journal
|
December 2019 |
The outer mucus layer hosts a distinct intestinal microbial niche
|
journal
|
September 2015 |
Functional annotation of orthologs in metagenomes: a case study of genes for the transformation of oceanic dimethylsulfoniopropionate
|
journal
|
January 2019 |
HqiA, a novel quorum-quenching enzyme which expands the AHL lactonase family
|
journal
|
April 2017 |
Filling the gap between collection, transport and storage of the human gut microbiota
|
journal
|
June 2019 |
Novel genomic island modifies DNA with 7-deazaguanine derivatives
|
journal
|
February 2016 |
HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes
|
journal
|
February 2020 |
Bacillus glycinifermentans sp. nov., isolated from fermented soybean paste
|
journal
|
October 2015 |
Ruegeria lutea sp. nov., isolated from marine sediment, Masan Bay, South Korea
|
journal
|
September 2019 |
Characterization of the first cultured representative of a Bacteroidetes clade specialized on the scavenging of cyanobacteria : Cyanobacteria foraging in hypersaline mats
|
journal
|
January 2017 |
A common mechanism for efficient N 2 O reduction in diverse isolates of nodule‐forming bradyrhizobia
|
journal
|
July 2019 |
Thiomicrorhabdus streamers and sulfur cycling in perennial hypersaline cold springs in the Canadian high Arctic
|
journal
|
January 2020 |
Rhizobacteria improve sugarcane growth and photosynthesis under well-watered conditions: Rhizobacteria and sugarcane
|
journal
|
February 2018 |
Transcriptional and Functional Analysis of Bifidobacterium animalis subsp. lactis Exposure to Tetracycline
|
journal
|
December 2018 |
Genome Sequence of “ Candidatus Thioglobus autotrophica” Strain EF1, a Chemoautotroph from the SUP05 Clade of Marine Gammaproteobacteria
|
journal
|
October 2015 |
Draft Genome Sequence of Streptomyces sp. Strain JV178, a Producer of Clifednamide-Type Polycyclic Tetramate Macrolactams
|
journal
|
January 2018 |
Genome Sequences of Bacillus sporothermodurans Strains Isolated from Ultra-High-Temperature Milk
|
journal
|
May 2019 |
Draft Genome Sequence of Blautia sp. Strain BCRC 81119, Isolated from Human Feces
|
journal
|
August 2018 |
Draft Genome Sequence of Ruminococcus sp. nov. B05, Isolated from Human Feces
|
journal
|
January 2019 |
Genome Sequence of Bacillus velezensis 5RB, an Overproducer of 2,3-Butanediol
|
journal
|
January 2019 |
The Gut Commensal Microbiome of Drosophila melanogaster Is Modified by the Endosymbiont Wolbachia
|
journal
|
October 2017 |
Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative Symbiont
|
journal
|
May 2019 |
Consumption of a Western-Style Diet Modulates the Response of the Murine Gut Microbiome to Ciprofloxacin
|
journal
|
August 2020 |
Prebiotic Potential of Culinary Spices Used to Support Digestion and Bioabsorption
|
journal
|
June 2019 |
Comparative genomics of Pseudomonas fluorescens subclade III strains from human lungs
|
journal
|
December 2015 |
Complete genome of Staphylococcus aureus Tager 104 provides evidence of its relation to modern systemic hospital-acquired strains
|
journal
|
March 2016 |
Plasmid composition in Aeromonas salmonicida subsp. salmonicida 01-B526 unravels unsuspected type three secretion system loss patterns
|
journal
|
July 2017 |
Wound infection with Vibrio harveyi following a traumatic leg amputation after a motorboat propeller injury in Mallorca, Spain: a case report and review of literature
|
journal
|
February 2020 |
MetAnnotate: function-specific taxonomic profiling and comparison of metagenomes
|
journal
|
November 2015 |
Identification and molecular epidemiology of methicillin resistant Staphylococcus pseudintermedius strains isolated from canine clinical samples in Argentina
|
journal
|
July 2019 |
Comparative proteome analysis in an Escherichia coli CyDisCo strain identifies stress responses related to protein production, oxidative stress and accumulation of misfolded protein
|
journal
|
January 2019 |
Whole-genome sequencing and comparative genomic analysis of Escherichia coli O91 strains isolated from symptomatic and asymptomatic human carriers
|
journal
|
November 2016 |
The dynamics of the piglet gut microbiome during the weaning transition in association with health and nutrition
|
journal
|
July 2018 |
Microbial shifts in the aging mouse gut
|
journal
|
December 2014 |
Fecal metatranscriptomics of macaques with idiopathic chronic diarrhea reveals altered mucin degradation and fucose utilization
|
journal
|
March 2019 |
Complete genome of Rhizobium leguminosarum Norway, an ineffective Lotus micro-symbiont
|
journal
|
December 2018 |
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome
|
journal
|
June 2015 |
Comparative genomic analyses reveal diverse virulence factors and antimicrobial resistance mechanisms in clinical Elizabethkingia meningoseptica strains
|
journal
|
October 2019 |
In vivo proteomics identifies the competence regulon and AliB oligopeptide transporter as pathogenic factors in pneumococcal meningitis
|
journal
|
July 2019 |
Genome Report: Identification and Validation of Antigenic Proteins from Pajaroellobacter abortibovis Using De Novo Genome Sequence Assembly and Reverse Vaccinology
|
journal
|
February 2017 |
Whole-chromosome hitchhiking driven by a male-killing endosymbiont.
|
text
|
January 2020 |
Genetic and molecular characterization of multicomponent resistance of Pseudomonas against allicin
|
journal
|
March 2020 |
Genome-Guided Insights into the Plant Growth Promotion Capabilities of the Physiologically Versatile Bacillus aryabhattai Strain AB211
|
journal
|
March 2017 |
Genome Sequencing of Extended-Spectrum β-Lactamase (ESBL)-Producing Klebsiella pneumoniae Isolated from Pigs and Abattoir Workers in Cameroon
|
journal
|
February 2018 |
Comparative Metatranscriptomics of Wheat Rhizosphere Microbiomes in Disease Suppressive and Non-suppressive Soils for Rhizoctonia solani AG8
|
journal
|
May 2018 |
Metagenomic and Resistome Analysis of a Full-Scale Municipal Wastewater Treatment Plant in Singapore Containing Membrane Bioreactors
|
journal
|
February 2019 |
Genomic Features, Comparative Genomic Analysis, and Antimicrobial Susceptibility Patterns of Chryseobacterium arthrosphaerae Strain ED882-96 Isolated in Taiwan
|
journal
|
April 2019 |
Comparative Genomic Insights into Secondary Metabolism Biosynthetic Gene Cluster Distributions of Marine Streptomyces
|
journal
|
August 2019 |
Comparative Analysis of Listeria monocytogenes Plasmids and Expression Levels of Plasmid-Encoded Genes during Growth under Salt and Acid Stress Conditions
|
journal
|
July 2019 |
Galleria mellonella as an infection model to investigate virulence of Vibrio parahaemolyticus
|
text
|
January 2018 |
Sequencing at sea: Challenges and experiences in Ion Torrent PGM sequencing during the 2013 Southern Line Islands Research Expedition
|
preprint
|
July 2014 |
A KBase Case Study on Genome-wide Transcriptomics and Plant Primary Metabolism in Sorghum
|
dataset
|
January 2021 |
Genome Extraction from Shotgun Metagenome Sequence Data
|
dataset
|
January 2021 |
Osur_paper
|
dataset
|
January 2021 |
Genomic insights of Pannonibacter phragmitetus strain 31801 isolated from a patient with a liver abscess
|
journal
|
August 2017 |
Nitrogen assimilation in denitrifier Bacillus azotoformans LMG 9581T
|
journal
|
July 2017 |
Man-made microbial resistances in built environments
|
journal
|
February 2019 |
Impact of Module-X2 and Carbohydrate Binding Module-3 on the catalytic activity of associated glycoside hydrolases towards plant biomass
|
journal
|
June 2017 |
Microbial bioinformatics for food safety and production
|
journal
|
June 2015 |
PATRIC as a unique resource for studying antimicrobial resistance
|
journal
|
July 2017 |
Curation, integration and visualization of bacterial virulence factors in PATRIC
|
journal
|
September 2014 |
Pedobacter chinensis sp. nov., a cellulose-decomposing bacterium from Arctic tundra soil
|
journal
|
July 2019 |
Algoriphagus aquimaris sp. nov., isolated from seashore sand
|
journal
|
February 2020 |
In Silico Identification of Three Types of Integrative and Conjugative Elements (ICEs) in Elizabethkingia anophelis Strains Isolated from Around the World
|
posted_content
|
August 2018 |
Identifying the Biosynthetic Gene Cluster for Triacsins with an N-hydroxytriazene Moiety
|
posted_content
|
December 2018 |
New Methyloceanibacter diversity from North Sea sediments includes methanotroph containing solely the soluble methane monooxygenase: New Methyloceanibacter Diversity from North Sea Sediments
|
journal
|
September 2016 |
Phylogeny and genomics of SAUL, an enigmatic bacterial lineage frequently associated with marine sponges: Phylogeny and genomics of SAUL
|
journal
|
November 2017 |
Insights into microbial community structure and function from a shallow, simulated CO 2 ‐leakage aquifer demonstrate microbial selection and adaptation
|
journal
|
August 2018 |
Iron acquisition and siderophore production in the fish pathogen Renibacterium salmoninarum
|
journal
|
January 2016 |
A novel streptococcal cell–cell communication peptide promotes pneumococcal virulence and biofilm formation
|
journal
|
June 2017 |
Three Draft Genome Sequences of Vibrio coralliilyticus Strains Isolated from Bivalve Hatcheries
|
journal
|
October 2017 |
Databases for Microbiologists: TABLE 1
|
journal
|
May 2015 |
The Complete Genome Sequence of the Emerging Pathogen Mycobacterium haemophilum Explains Its Unique Culture Requirements
|
journal
|
November 2015 |
Complete Genome Sequence of Nissabacter sp. Strain SGAir0207, Isolated from an Air Sample Collected in Singapore
|
journal
|
August 2019 |
Draft Genome Sequence of the Non-Microcystin-Producing Microcystis aeruginosa Strain KLA2, Isolated from a Freshwater Reservoir in Northern California, USA
|
journal
|
January 2020 |
Complete Genome Sequence of Aeromonas Phage ZPAH7 with Halo Zones, Isolated in China
|
journal
|
March 2019 |
Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits
|
journal
|
February 2017 |
Environmentally-driven gene content convergence and the Bacillus phylogeny
|
journal
|
October 2018 |
Genomic characterization of Ensifer aridi, a proposed new species of nitrogen-fixing rhizobium recovered from Asian, African and American deserts
|
journal
|
January 2017 |
Comparative genome analysis reveals key genetic factors associated with probiotic property in Enterococcus faecium strains
|
journal
|
September 2018 |
Genome and proteome of the chlorophyll f-producing cyanobacterium Halomicronema hongdechloris: adaptative proteomic shifts under different light conditions
|
journal
|
March 2019 |
Regional outbreak of community-associated methicillin-resistant Staphylococcus aureus ST834 in Japanese children
|
journal
|
January 2019 |
Decoding the complete arsenal for cellulose and hemicellulose deconstruction in the highly efficient cellulose decomposer Paenibacillus O199
|
journal
|
May 2016 |
Complete genome sequence of a commensal bacterium, Hafnia alvei CBA7124, isolated from human feces
|
journal
|
July 2017 |
Draft genome sequences of two opportunistic pathogenic strains of Staphylococcus cohnii isolated from human patients
|
journal
|
August 2017 |
Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366)
|
journal
|
December 2017 |
Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes
|
journal
|
November 2018 |
Community-intrinsic properties enhance keratin degradation from bacterial consortia
|
journal
|
January 2020 |
Genomic Characterization of Lactobacillus delbrueckii TUA4408L and Evaluation of the Antiviral Activities of its Extracellular Polysaccharides in Porcine Intestinal Epithelial Cells
|
journal
|
September 2018 |
Conjugative Transfer of a Novel Staphylococcal Plasmid Encoding the Biocide Resistance Gene, qacA
|
journal
|
November 2018 |
Biological Potential of Chitinolytic Marine Bacteria
|
journal
|
December 2016 |
Characterization of Two Pseudomonas aeruginosa Viruses vB_PaeM_SCUT-S1 and vB_PaeM_SCUT-S2
|
journal
|
April 2019 |
KBase Narrative - kb_DRAM E. coli annotation
|
dataset
|
January 2022 |
Complete Genome of ORR Isolate Bacillus cereus CPT56D-587-MTF
|
dataset
|
January 2022 |
KBase Narrative - Mse_Genome_Assembly
|
dataset
|
January 2022 |
KBase Narrative - kb_DRAM P. normanii annotation with model
|
dataset
|
January 2022 |
Ecogenomics reveals community interactions in a long-term methanogenic bioreactor and a rapid switch to sulfate-reducing conditions
- St. James, Andrew; Crockett, Zachary
-
Cornell Univ., Ithaca, NY (United States);Department of Energy Systems Biology Knowledgebase; Lawrence Berkeley
National Lab. (LBNL), Berkeley, CA (United States); Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)
https://doi.org/10.25982/51077.6/1637903
|
dataset
|
January 2020 |
Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the Rhizosphere of Populus deltoides
|
dataset
|
January 2020 |
Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from the Populus deltoides Rhizosphere
|
dataset
|
January 2020 |
Moab Desert Crust - Sample 4E
|
dataset
|
January 2021 |
Case Study: Can you find Delftia?
|
|
August 2020 |
KBase Silver Case Study: Determining Media Formulation Requirements for Isolation of Microbiome Constituents
|
dataset
|
January 2021 |
Omics-to-Reactive-Transport (ORT): A workflow linking genome-scale metabolic models with reactive transport codes
|
dataset
|
January 2021 |
Genome sequence of
Methylocystis hirsuta
CSC1, a polyhydroxyalkanoate producing methanotroph
|
journal
|
December 2018 |
Genomic analysis of a novel Rhodococcus (Prescottella) equi isolate from a bovine host
|
journal
|
July 2019 |
Data on genome sequencing, assembly, annotation and genomic analysis of Rhodococcus rhodochrous strain SPC17 isolated from Lonar Lake
|
journal
|
April 2020 |
Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5
|
journal
|
March 2016 |
Author Correction: Searching for signatures across microbial communities: Metagenomic analysis of soil samples from mangrove and other ecosystems
|
journal
|
January 2018 |
Citrobacter freundii fitness during bloodstream infection
|
journal
|
August 2018 |
Comparative Genomics of 86 Whole-Genome Sequences in the Six Species of the Elizabethkingia Genus Reveals Intraspecific and Interspecific Divergence
|
journal
|
December 2019 |
Genomic Epidemiology of Vancomycin-Resistant Enterococcus faecium (VREfm) in Latin America: Revisiting The Global VRE Population Structure
|
journal
|
March 2020 |
Diversity of antibiotic-resistance genes in Canadian isolates of Aeromonas salmonicida subsp. salmonicida: dominance of pSN254b and discovery of pAsa8
|
journal
|
October 2016 |
Transcriptomic analysis of the highly efficient oil-degrading bacteriumAcinetobacter venetianusRAG-1 reveals genes important in dodecane uptake and utilization
|
journal
|
September 2016 |
The Variable Regions ofLactobacillus rhamnosusGenomes Reveal the Dynamic Evolution of Metabolic and Host-Adaptation Repertoires
|
journal
|
June 2016 |
Whole-Genome Sequence of the Anaerobic Isosaccharinic Acid Degrading Isolate, Macellibacteroides fermentans Strain HH-ZS
|
journal
|
August 2017 |
A novel bifunctional transcriptional regulator of riboflavin metabolism in Archaea
|
journal
|
January 2017 |
Effects of microbiota-directed foods in gnotobiotic animals and undernourished children
|
journal
|
July 2019 |
Complete Genome Sequence of a Staphylococcus epidermidis Strain with Exceptional Antimicrobial Activity
|
journal
|
March 2017 |
Draft Genome Sequence of Plant Growth-Promoting and Drought-Tolerant Bacillus altitudinis FD48, Isolated from Rice Phylloplane
|
journal
|
March 2018 |
Draft Genome Sequence of Bacillus licheniformis VSD4, a Diesel Fuel–Degrading and Plant Growth–Promoting Phyllospheric Bacterium
|
journal
|
March 2017 |
Draft Genome Sequences of Two
Kocuria
Isolates,
K. salsicia
G1 and
K. rhizophila
G2, Isolated from a Slaughterhouse in Denmark
|
journal
|
April 2016 |
Complete Genome Sequences of Two Phage-Like Plasmids Carrying the CTX-M-15 Extended-Spectrum β-Lactamase Gene
|
journal
|
May 2017 |
Draft Genome Sequence of Sphingorhabdus sp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian Coral Eunicella labiata
|
journal
|
March 2018 |
Complete Genome Sequence of Multiple-Antibiotic-Resistant Streptococcus parauberis Strain SPOF3K, Isolated from Diseased Olive Flounder (Paralichthys olivaceus)
|
journal
|
April 2018 |
Draft Genome Sequence and Assembly of a Lysobacter enzymogenes Strain with Biological Control Activity against Root Knot Nematodes
|
journal
|
May 2017 |
Genome Sequences of Four Staphylococcus aureus Strains Isolated from Bovine Mastitis
|
journal
|
April 2015 |
Complete Genome Sequence of a Mosaic Bacteriophage, Waukesha92
|
journal
|
August 2014 |
Complete Genome Sequence of Erwinia amylovora Bacteriophage vB_EamM_Ea35-70
|
journal
|
August 2014 |
Draft Genome Sequence of the Obligately Alkaliphilic Sulfate-Reducing Bacterium Desulfonatronum thiodismutans Strain MLF1
|
journal
|
August 2014 |
Complete Genome Sequence of an
Edwardsiella piscicida
-Like Species Isolated from Diseased Grouper in Israel
|
journal
|
August 2015 |
Draft Genome Sequence of Desulfocarbo indianensis SCBM, a New Genus of Sulfate-Reducing Bacteria, Isolated from Water Extracted from an Active Coalbed Methane Gas Well
|
journal
|
October 2015 |
Draft Genome Sequences of the Fish Pathogen Vibrio harveyi Strains VH2 and VH5
|
journal
|
October 2015 |
Whole-Genome Sequence of Pseudomonas xanthomarina Strain UASWS0955, a Potential Biological Agent for Agricultural and Environmental Uses
|
journal
|
October 2016 |
Complete Genome Sequences of Four Escherichia coli ST95 Isolates from Bloodstream Infections
|
journal
|
December 2015 |
Draft Genome Sequence of the Moderately Heat-Tolerant
Lactococcus lactis
subsp.
lactis
bv. diacetylactis Strain GL2 from Algerian Dromedary Milk
|
journal
|
December 2015 |
Draft Genome Sequence of Violacein-Producing Marine Bacterium
Pseudoalteromonas
sp. 520P1
|
journal
|
December 2014 |
Complete Genome Sequence of Bacillus altitudinis P-10, a Potential Bioprotectant against Xanthomonas oryzae pv. oryzae, Isolated from Rice Rhizosphere in Java, Indonesia
|
journal
|
November 2017 |
Draft Genome Sequence of Streptomyces sp. Strain 150FB, a Mushroom Mycoparasite Antagonist
|
journal
|
April 2015 |
Draft Genome Sequence of a Virulent Pectobacterium carotovorum subsp.
brasiliense
Isolate Causing Soft Rot of Cucumber
|
journal
|
February 2016 |
Draft Genome Sequence of Thalassospira xiamenensis Strain MCCC 1A03042
T
|
journal
|
March 2017 |
Metabolism of Toxic Sugars by Strains of the Bee Gut Symbiont Gilliamella apicola
|
journal
|
November 2016 |
Draft Genome Sequences of Five Methicillin-Sensitive Staphylococcus aureus Isolates from Skin Lesions in Patients with Atopic Dermatitis in the Russian Federation
|
journal
|
October 2018 |
Genome Sequence of a Potentially New
Buttiauxella
Species, Strain B2, Isolated from Rhizosphere of Olivillo Trees (
Aextoxicon punctatum
)
|
journal
|
February 2020 |
Draft Genome Sequence of Sideroxydans sp. Strain CL21, an Fe(II)-Oxidizing Bacterium
|
journal
|
January 2020 |
Draft Genome Sequence of Bradyrhizobium elkanii BR 2003, an Efficient Rhizobium Strain for
Cajanus, Canavalia
,
Crotalaria
, and
Indigofera
|
journal
|
March 2020 |
Draft Genome Sequence of a Marine Photoferrotrophic Bacterium, Rhodovulum robiginosum DSM 12329T
|
journal
|
February 2019 |
Draft genome sequences of strains Salinicola socius SMB35T, Salinicola sp. MH3R3–1 and Chromohalobacter sp. SMB17 from the Verkhnekamsk potash mining region of Russia
|
journal
|
July 2017 |
DFAST and DAGA: web-based integrated genome annotation tools and resources
|
journal
|
January 2016 |
Mutation-Driven Divergence and Convergence Indicate Adaptive Evolution of the Intracellular Human-Restricted Pathogen, Bartonella bacilliformis
|
journal
|
May 2016 |
Microbial Potential for Ecosystem N Loss Is Increased by Experimental N Deposition
|
journal
|
October 2016 |
A genome-scale metabolic reconstruction of Lysinibacillus sphaericus unveils unexploited biotechnological potentials
|
journal
|
June 2017 |
The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
|
journal
|
June 2015 |
Identification of the Genes Required for the Culture of Liberibacter crescens, the Closest Cultured Relative of the Liberibacter Plant Pathogens
|
journal
|
April 2016 |
Comparative Analysis of Genomics and Proteomics in the New Isolated Bacillus thuringiensis X022 Revealed the Metabolic Regulation Mechanism of Carbon Flux Following Cu2+ Treatment
|
journal
|
May 2016 |
The Complete Sequences and Ecological Roles of Two IncP-1β Plasmids, pHB44 and pBS64, Isolated from the Mycosphere of Laccaria proxima
|
journal
|
June 2016 |
CRISPR-Cas Defense System and Potential Prophages in Cyanobacteria Associated with the Coral Black Band Disease
|
journal
|
December 2016 |
Comparative Genomic Characterization of the Highly Persistent and Potentially Virulent Cronobacter sakazakii ST83, CC65 Strain H322 and Other ST83 Strains
|
journal
|
June 2017 |
Isolation, Development, and Genomic Analysis of Bacillus megaterium SR7 for Growth and Metabolite Production Under Supercritical Carbon Dioxide
|
journal
|
September 2018 |
Co-culture of a Novel Fermentative Bacterium, Lucifera butyrica gen. nov. sp. nov., With the Sulfur Reducer Desulfurella amilsii for Enhanced Sulfidogenesis
|
journal
|
December 2018 |
A Comparison of Microbial Genome Web Portals
|
journal
|
February 2019 |
Two Broad Host Range Rhizobial Strains Isolated From Relict Legumes Have Various Complementary Effects on Symbiotic Parameters of Co-inoculated Plants
|
journal
|
March 2019 |
Comparative Genomics and Metabolomics Analyses of Clavulanic Acid-Producing Streptomyces Species Provides Insight Into Specialized Metabolism
|
journal
|
November 2019 |
Metatranscriptomic Insights Into the Response of River Biofilm Communities to Ionic and Nano-Zinc Oxide Exposures
|
journal
|
February 2020 |
Two Novel Myoviruses from the North of Iraq Reveal Insights into Clostridium difficile Phage Diversity and Biology
|
journal
|
November 2016 |
proGenomes: A resource for consistent functional and taxonomic annotations of prokaryotic genomes
|
text
|
January 2017 |
Essential metabolism for a minimal cell
|
journal
|
January 2019 |