PROCOGNATE: a cognate ligand domain mapping for enzymes

Bashton, M.; Nobeli, I.; Thornton, J. M.

doi:10.1093/nar/gkm611

Title: PROCOGNATE: a cognate ligand domain mapping for enzymes

Journal Article · Fri Aug 24 00:00:00 EDT 2007 · Nucleic Acids Research

DOI:https://doi.org/10.1093/nar/gkm611· OSTI ID:1625427

Bashton, M. ^[1]; Nobeli, I. ^[2]; Thornton, J. M. ^[1]

European Molecular Biology Lab. (EMBL), Cambridge (United Kingdom). Wellcome Trust Genome Campus
King's College, London (United Kingdom). Randall Division of Cell and Molecular Biophysics

PROCOGNATE is a database of protein cognate ligands for the domains in enzyme structures as described by CATH, SCOP and Pfam, and is available as an interactive website or a flat file. This article gives an overview of the database and its generation and presents a new website front end, as well as recent increased coverage in our dataset via inclusion of Pfam domains. We also describe navigation of the website and its features. The current version (1.3) of PROCOGNATE covers 4123, 4536, 5876 structures and 377, 326, 695 superfamilies/families in CATH, SCOP and Pfam, respectively. PROCOGNATE can be accessed at: http://www.ebi.ac.uk/ thornton-srv/databases/procognate/

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Research Organization:: European Molecular Biology Lab. (EMBL), Cambridge (United Kingdom)

Sponsoring Organization:: USDOE Office of Science (SC), Biological and Environmental Research (BER). Biological Systems Science Division; National Institutes of Health (NIH)

Grant/Contract Number:: W-31-109-ENG38; GM62414

OSTI ID:: 1625427

Journal Information:: Nucleic Acids Research, Vol. 36, Issue suppl_1; ISSN 0305-1048

Publisher:: Oxford University PressCopyright Statement

Country of Publication:: United States

Language:: English

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